TSPO (translocator protein) - Rat Genome Database

Name: TSPO
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TSPO (translocator protein) Canis lupus familiaris

Analyze

Symbol:

TSPO

Name:

translocator protein

RGD ID:

12423057

Description:

ENCODES a protein that exhibits androgen binding (ortholog); benzodiazepine receptor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); behavioral response to pain (ortholog); cellular hypotonic response (ortholog); PARTICIPATES IN heme biosynthetic pathway; ASSOCIATED WITH cholesterol ester storage disease (ortholog); COVID-19 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); FOUND IN mitochondrial outer membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSPO (translocator protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tspo (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tspo (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tspo (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TSPO (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tspo (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSPO (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSPO (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tspo (translocator protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	22,388,498 - 22,399,329 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	22,274,405 - 22,399,297 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	22,325,190 - 22,336,049 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	23,132,949 - 23,143,978 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	23,132,954 - 23,135,891 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	22,852,287 - 22,863,109 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	23,171,467 - 23,182,483 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	23,347,120 - 23,357,948 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cholesterol ester storage disease (ISO)

COVID-19 (ISO)

Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ISO)

End Stage Liver Disease (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

hepatic encephalopathy (ISO)

intellectual disability (ISO)

Phelan-McDermid syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adrenal gland development (ISO)

behavioral response to pain (ISO)

cellular hypotonic response (ISO)

cellular response to lipopolysaccharide (ISO)

cellular response to zinc ion (ISO)

chloride transport (ISO)

cholesterol homeostasis (ISO)

contact inhibition (ISO)

establishment of protein localization to mitochondrion (IEA)

glial cell migration (ISO)

lipid transport (IEA)

maintenance of protein location in mitochondrion (IEA)

monoatomic ion transport (ISO)

negative regulation of ATP metabolic process (IEA)

negative regulation of corticosterone secretion (ISO)

negative regulation of glial cell proliferation (ISO)

negative regulation of mitophagy (IEA)

negative regulation of nitric oxide biosynthetic process (ISO)

negative regulation of protein ubiquitination (IEA)

negative regulation of tumor necrosis factor production (ISO)

obsolete negative regulation of mitochondrion organization (IEA)

peripheral nervous system axon regeneration (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of calcium ion transport (ISO)

positive regulation of glial cell proliferation (ISO)

positive regulation of mitochondrial depolarization (ISO)

positive regulation of programmed necrotic cell death (ISO)

positive regulation of reactive oxygen species metabolic process (IEA,ISO)

regulation of steroid biosynthetic process (ISO)

response to acetylcholine (ISO)

response to axon injury (ISO)

response to manganese ion (ISO)

response to pain (ISO)

response to progesterone (ISO)

response to testosterone (ISO)

response to vitamin B1 (ISO)

response to xenobiotic stimulus (ISO)

steroid biosynthetic process (ISO)

Cellular Component

cytosol (IEA)

endoplasmic reticulum (IEA)

intracellular membrane-bounded organelle (IEA)

membrane (IEA)

mitochondrial membrane (IEA)

mitochondrial outer membrane (IEA,ISO)

mitochondrion (IEA)

Molecular Function

androgen binding (ISO)

benzodiazepine receptor activity (ISO)

cholesterol binding (IEA)

protein binding (ISO)

transmembrane transporter binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

heme biosynthetic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TSPO
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	22,388,498 - 22,399,329 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	22,274,405 - 22,399,297 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	22,325,190 - 22,336,049 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	23,132,949 - 23,143,978 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	23,132,954 - 23,135,891 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	22,852,287 - 22,863,109 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	23,171,467 - 23,182,483 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	23,347,120 - 23,357,948 (-)	NCBI		UU_Cfam_GSD_1.0

TSPO
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	43,151,559 - 43,163,242 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	43,151,547 - 43,163,242 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	43,547,565 - 43,559,248 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	41,877,479 - 41,889,192 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	41,872,050 - 41,883,745	NCBI
Celera	22	27,457,910 - 27,469,623 (+)	NCBI		Celera
Cytogenetic Map	22	q13.2	NCBI
HuRef	22	26,505,727 - 26,517,455 (+)	NCBI		HuRef
CHM1_1	22	43,507,104 - 43,518,509 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	43,632,715 - 43,644,077 (+)	NCBI		T2T-CHM13v2.0

Tspo
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	83,447,774 - 83,458,404 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	83,447,793 - 83,458,404 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	83,563,573 - 83,574,203 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	83,563,592 - 83,574,203 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	83,394,003 - 83,404,633 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	83,391,377 - 83,401,962 (+)	NCBI		MGSCv36	mm8
Celera	15	85,689,315 - 85,701,021 (+)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	39.4	NCBI

Tspo
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	116,600,214 - 116,610,461 (+)	NCBI		GRCr8
mRatBN7.2	7	114,720,188 - 114,730,450 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	114,720,188 - 114,730,450 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	116,467,236 - 116,477,482 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	118,693,096 - 118,703,201 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	118,662,565 - 118,672,671 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	124,460,358 - 124,470,610 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	124,460,358 - 124,470,609 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	124,449,361 - 124,459,090 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	121,597,084 - 121,599,342 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	121,631,313 - 121,633,572 (+)	NCBI
Celera	7	111,031,561 - 111,041,788 (+)	NCBI		Celera
RH 3.4 Map	7	906.4	RGD
Cytogenetic Map	7	q34	NCBI

Tspo
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	28,308,658 - 28,315,075 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	28,309,105 - 28,315,075 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSPO
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	52,974,420 - 52,985,872 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	55,667,318 - 55,678,778 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	24,034,918 - 24,046,370 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	42,233,186 - 42,244,930 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	42,233,619 - 42,244,930 (+)	Ensembl	panpan1.1		panPan2

Tspo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	5,984,991 - 5,987,864 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936718	992,301 - 995,995 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936718	992,301 - 995,172 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSPO
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	5,723,190 - 5,735,131 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	5,723,190 - 5,735,097 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	3,145,792 - 3,157,669 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSPO
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	25,678,602 - 25,690,556 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	25,686,981 - 25,690,768 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	99,748,097 - 99,760,895 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tspo
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	5,814,784 - 5,820,141 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	5,814,784 - 5,820,250 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TSPO
200 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	22	6	6	6	6		7	8	10	6
Low								6	5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005625774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038488382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038550296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038614275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038679615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000001416 ⟹ ENSCAFP00000001302

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	10	22,388,501 - 22,391,432 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000063239 ⟹ ENSCAFP00000052954

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	10	22,274,405 - 22,399,297 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845025440 ⟹ ENSCAFP00845020028

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	23,132,954 - 23,135,891 (-)	Ensembl

RefSeq Acc Id:

XM_005625774 ⟹ XP_005625831

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	10	22,388,498 - 22,399,329 (-)	NCBI
Dog10K_Boxer_Tasha	10	22,325,190 - 22,336,049 (-)	NCBI

Sequence:

show sequence

GGGGCGGGCGGGGCAGGGACCTGGGCCACCACCCCGCGCCGCGCAGTGCCTTCCCGGAGCGCGT
CCTGGTCGCTGAACCTTCCAGAACAGCCGCCACAGCAGCAATGGCCCCGCCTTGGGTGCCCGCC
GTGGGCTTCACCCTGGTGCCCAGCCTGGGGGGCTTCCTGGGCTCGTACTATGTCCGCGGGGAGG
GCCTCCGCTGGTATGCCAGCCTGCAGAAGCCCTCGTGGCACCCGCCGCGCTGGACGCTGGGCCC
CATCTGGGGCACCCTGTACTCGGCCATGGGGTATGGCTCCTACATGGTCTGGAAAGAGCTGGGG
GGCTTCTCGGAGGAGGCCGTGGTTCCCCTGGGACTCTATGCTGGGCAGCTGGCCTTGAACTGGG
CTTGGCCTCCCCTCTTCTTTGGCACCCGACAAATGGGTTGGGCCCTGGTGGACCTCCTGCTGAC
GGGTGGGCTGGCAGGAGCCACGGCCGTGGCCTGGCACAGGGTGAGCCCTCCGGCCGCCCGCCTG
CTGTACCCGTACCTGGCCTGGCTGGCCTTCGCGGCCGCACTCAACTACTGTGTCTGGCGGGACA
ACCAGGGCTGGCGTGGTGGCCGTCGGCTCACAGACTGAGAGCCCGGCCCTCTGAGGACCACAGC
TGCTGCCCGGCAGGTGCTGTCCGTGGTGGTGACCCTTGTGCTCCCGTGGCCGCGAGGCCTGCAG
GTCTGTGGGGTCTCAGCCCGGGGTCACCGCAGCTTCAGAAGTGCCCCCAGGCCGAGCCCCGACC
CGGGAACAGCGTCCTGCGCCTTCTGCCCCGCTCCAAGCTCGCTCTCACTCTCGGAACACGGAAT
GTTAGCAGCAAATAAAGTTTCTAACCTCCTGG

hide sequence

RefSeq Acc Id:

XM_038488382 ⟹ XP_038344310

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	10	22,852,287 - 22,863,109 (-)	NCBI

RefSeq Acc Id:

XM_038550296 ⟹ XP_038406224

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	10	23,347,120 - 23,357,948 (-)	NCBI

RefSeq Acc Id:

XM_038614275 ⟹ XP_038470203

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	10	23,171,467 - 23,182,483 (-)	NCBI

RefSeq Acc Id:

XM_038679615 ⟹ XP_038535543

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	10	23,132,949 - 23,143,978 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005625831	(Get FASTA)	NCBI Sequence Viewer
	XP_038344310	(Get FASTA)	NCBI Sequence Viewer
	XP_038406224	(Get FASTA)	NCBI Sequence Viewer
	XP_038470203	(Get FASTA)	NCBI Sequence Viewer
	XP_038535543	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000001302.3
	ENSCAFP00030006909.1
	ENSCAFP00040021446.1
	ENSCAFP00845020028
	ENSCAFP00845020028.1

RefSeq Acc Id:	XP_005625831 ⟸ XM_005625774
- UniProtKB:	A0A8C0KCS8 (UniProtKB/TrEMBL), A0A8C0M9V3 (UniProtKB/TrEMBL), A0A8I3NSR5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPPWVPAVGFTLVPSLGGFLGSYYVRGEGLRWYASLQKPSWHPPRWTLGPIWGTLYSAMGYGS YMVWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGLAGATAVAWHR VSPPAARLLYPYLAWLAFAAALNYCVWRDNQGWRGGRRLTD hide sequence

RefSeq Acc Id:

ENSCAFP00000001302 ⟸ ENSCAFT00000001416

RefSeq Acc Id:

ENSCAFP00000052954 ⟸ ENSCAFT00000063239

RefSeq Acc Id:

XP_038344310 ⟸ XM_038488382

RefSeq Acc Id:

XP_038470203 ⟸ XM_038614275

RefSeq Acc Id:	XP_038535543 ⟸ XM_038679615
- UniProtKB:	A0A8C0KCS8 (UniProtKB/TrEMBL), A0A8C0M9V3 (UniProtKB/TrEMBL), A0A8I3NSR5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038406224 ⟸ XM_038550296
- UniProtKB:	A0A8C0KCS8 (UniProtKB/TrEMBL), A0A8C0M9V3 (UniProtKB/TrEMBL), A0A8I3NSR5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845020028 ⟸ ENSCAFT00845025440

Promoters

RGD ID:

13684935

Promoter ID:

EPDNEW_C3003

Type:

multiple initiation site

Name:

TSPO_1

Description:

translocator protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	10	22,399,285 - 22,399,345	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000000913	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030004276	UniProtKB/TrEMBL
	ENSCAFG00040013355	UniProtKB/TrEMBL
	ENSCAFG00845014235	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000001416.5	UniProtKB/TrEMBL
	ENSCAFT00030007878.1	UniProtKB/TrEMBL
	ENSCAFT00040024676.1	UniProtKB/TrEMBL
	ENSCAFT00845025440	ENTREZGENE
	ENSCAFT00845025440.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1260.100	UniProtKB/TrEMBL
InterPro	TspO/MBR-related_sf	UniProtKB/TrEMBL
	TspO_MBR	UniProtKB/TrEMBL
KEGG Report	cfa:474475	UniProtKB/TrEMBL
NCBI Gene	TSPO	ENTREZGENE
PANTHER	PTHR10057	UniProtKB/TrEMBL
	PTHR10057:SF5	UniProtKB/TrEMBL
Pfam	TspO_MBR	UniProtKB/TrEMBL
PIRSF	PBR	UniProtKB/TrEMBL
UniProt	A0A8C0KCS8	ENTREZGENE
	A0A8C0M9V3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NSR5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:54552	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - CTD

RGD Manual Annotations