KRT82 (keratin 82) - Rat Genome Database

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Gene: KRT82 (keratin 82) Canis lupus familiaris
Analyze
Symbol: KRT82
Name: keratin 82
RGD ID: 12420446
Description: ENCODES a protein that exhibits structural constituent of skin epidermis (inferred); INVOLVED IN intermediate filament organization (inferred); keratinization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular space (inferred); intermediate filament (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin, type II cuticular Hb2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,663,434 - 2,675,425 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,663,485 - 2,674,456 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,578,595 - 43,590,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,662,534 - 2,674,474 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,662,534 - 2,673,505 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,679,422 - 2,691,358 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,665,046 - 2,676,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,977,666 - 43,988,731 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KRT82
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,663,434 - 2,675,425 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,663,485 - 2,674,456 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,578,595 - 43,590,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,662,534 - 2,674,474 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,662,534 - 2,673,505 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,679,422 - 2,691,358 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,665,046 - 2,676,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,977,666 - 43,988,731 (-)NCBIUU_Cfam_GSD_1.0
KRT82
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,393,931 - 52,406,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,393,931 - 52,406,335 (-)EnsemblGRCh38hg38GRCh38
GRCh371252,787,715 - 52,800,119 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,074,002 - 51,086,443 (-)NCBINCBI36Build 36hg18NCBI36
Build 341251,074,001 - 51,086,443NCBI
Celera1252,433,892 - 52,446,333 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,831,286 - 49,843,726 (-)NCBIHuRef
CHM1_11252,754,374 - 52,766,814 (-)NCBICHM1_1
T2T-CHM13v2.01252,357,844 - 52,370,247 (-)NCBIT2T-CHM13v2.0
Krt82
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,449,651 - 101,459,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,449,649 - 101,459,102 (-)EnsemblGRCm39 Ensembl
GRCm3815101,541,216 - 101,550,659 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,541,214 - 101,550,667 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,371,647 - 101,381,090 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,369,248 - 101,378,701 (-)NCBIMGSCv36mm8
Celera15103,693,243 - 103,702,691 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1556.9NCBI
Krt82
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,544,231 - 134,554,087 (-)NCBIGRCr8
mRatBN7.27132,665,506 - 132,675,362 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,665,292 - 132,675,489 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,467,601 - 134,477,403 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,697,123 - 136,706,925 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,606,750 - 136,616,585 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,196,282 - 143,206,138 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,196,068 - 143,206,265 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,996,765 - 141,006,621 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,296,449 - 140,307,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,372,885 - 140,383,779 (-)NCBI
Celera7129,128,471 - 129,138,363 (-)NCBICelera
Cytogenetic Map7q36NCBI
Krt82
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,744,554 - 2,755,794 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,744,554 - 2,755,794 (-)NCBIChiLan1.0ChiLan1.0
KRT82
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21041,788,883 - 41,801,104 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11241,785,646 - 41,797,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,356,437 - 36,368,678 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,133,430 - 37,145,682 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,133,430 - 37,145,682 (+)Ensemblpanpan1.1panPan2
Krt82
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,353,051 - 63,364,634 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,800,760 - 9,811,820 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,800,770 - 9,811,820 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT82
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,717,924 - 17,732,009 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1517,716,802 - 17,732,020 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,163,915 - 18,179,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KRT82
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,541,240 - 48,556,003 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,543,397 - 48,554,794 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,537,417 - 197,550,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt82
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624904530,604 - 540,678 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624904529,600 - 540,678 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KRT82
347 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low
Below cutoff 2 1 6 1 1 7 8 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000011652   ⟹   ENSCAFP00000010797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl272,663,485 - 2,674,456 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045746   ⟹   ENSCAFP00845035902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,662,534 - 2,673,505 (+)Ensembl
RefSeq Acc Id: XM_038437855   ⟹   XP_038293783
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0272,662,534 - 2,674,474 (+)NCBI
RefSeq Acc Id: XM_038514274   ⟹   XP_038370202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1272,679,422 - 2,691,358 (+)NCBI
RefSeq Acc Id: XM_038576170   ⟹   XP_038432098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02743,977,666 - 43,988,731 (-)NCBI
RefSeq Acc Id: XM_038640324   ⟹   XP_038496252
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0272,665,046 - 2,676,902 (+)NCBI
RefSeq Acc Id: XM_543651   ⟹   XP_543651
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1272,663,434 - 2,675,425 (+)NCBI
Dog10K_Boxer_Tasha2743,578,595 - 43,590,536 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_543651   ⟸   XM_543651
- UniProtKB: A0A8C0P3V7 (UniProtKB/TrEMBL),   A0A8I3PWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000010797   ⟸   ENSCAFT00000011652
RefSeq Acc Id: XP_038370202   ⟸   XM_038514274
RefSeq Acc Id: XP_038496252   ⟸   XM_038640324
RefSeq Acc Id: XP_038293783   ⟸   XM_038437855
- UniProtKB: A0A8C0P3V7 (UniProtKB/TrEMBL),   A0A8I3PWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432098   ⟸   XM_038576170
- UniProtKB: A0A8C0P3V7 (UniProtKB/TrEMBL),   A0A8I3PWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035902   ⟸   ENSCAFT00845045746
Protein Domains
IF rod


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007281 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021508 UniProtKB/TrEMBL
  ENSCAFG00845025904 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011652.5 UniProtKB/TrEMBL
  ENSCAFT00030039512.1 UniProtKB/TrEMBL
  ENSCAFT00845045746 ENTREZGENE
  ENSCAFT00845045746.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
  Keratin_II UniProtKB/TrEMBL
NCBI Gene KRT82 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KERATIN, TYPE II CUTICULAR HB2 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
PRINTS TYPE2KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A8C0P3V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PWP6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42535 ENTREZGENE