KRT19 (keratin 19) - Rat Genome Database

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Gene: KRT19 (keratin 19) Canis lupus familiaris
Analyze
Symbol: KRT19
Name: keratin 19
RGD ID: 12420024
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); structural constituent of muscle (ortholog); INVOLVED IN cell differentiation involved in embryonic placenta development (ortholog); Notch signaling pathway (ortholog); response to estrogen (ortholog); ASSOCIATED WITH asthma (ortholog); autoimmune disease (ortholog); cholangitis (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cell periphery (ortholog); costamere (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: keratin, type I cytoskeletal 19
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,240,778 - 21,245,039 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,702,551 - 20,706,814 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,961,705 - 21,965,969 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1920,747,715 - 20,751,978 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,013,735 - 21,018,001 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,117,527 - 21,121,798 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:25748637   PMID:30032202  


Genomics

Comparative Map Data
KRT19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,240,778 - 21,245,039 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,702,551 - 20,706,814 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,961,705 - 21,965,969 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1920,747,715 - 20,751,978 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,013,735 - 21,018,001 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,117,527 - 21,121,798 (+)NCBIUU_Cfam_GSD_1.0
KRT19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,523,617 - 41,528,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,523,617 - 41,528,308 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,679,869 - 39,684,560 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,933,395 - 36,938,167 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,933,395 - 36,938,160NCBI
Celera1736,333,093 - 36,337,867 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,443,484 - 35,448,259 (-)NCBIHuRef
CHM1_11739,915,178 - 39,919,959 (-)NCBICHM1_1
T2T-CHM13v2.01742,379,161 - 42,383,869 (-)NCBIT2T-CHM13v2.0
Krt19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,031,636 - 100,036,752 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,031,636 - 100,039,491 (-)EnsemblGRCm39 Ensembl
GRCm3811100,140,810 - 100,145,926 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,140,810 - 100,148,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,002,124 - 100,007,233 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,956,900 - 99,962,009 (-)NCBIMGSCv36mm8
Celera11110,757,190 - 110,762,299 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.42NCBI
Krt19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,576,235 - 85,580,952 (-)NCBIGRCr8
mRatBN7.21085,075,835 - 85,080,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,066,802 - 85,171,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,093,836 - 90,098,710 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01089,592,194 - 89,596,911 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01084,984,138 - 84,988,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,055,843 - 88,060,560 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,055,841 - 88,060,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01087,848,518 - 87,853,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,080,953 - 89,085,670 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,095,322 - 89,100,040 (-)NCBI
Celera1083,795,223 - 83,800,127 (-)NCBICelera
Cytogenetic Map10q31NCBI
KRT19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,456,199 - 23,461,175 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,346,539 - 25,351,311 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,788,355 - 15,793,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,006,608 - 16,010,782 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,006,608 - 16,010,782 (+)Ensemblpanpan1.1panPan2
Krt19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,630,470 - 20,634,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649016,440,693 - 16,444,791 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649016,440,723 - 16,444,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,115,448 - 21,119,107 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,115,453 - 21,119,115 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,536,784 - 21,540,278 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KRT19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,714,497 - 64,719,805 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,714,970 - 64,719,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607735,559,784 - 35,564,785 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in KRT19
44 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 6
Medium
Low 1 2
Below cutoff 3 2 16 2 1 2 2 9 6 8 3

Sequence


RefSeq Acc Id: NM_001253742   ⟹   NP_001240671
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1921,240,778 - 21,245,039 (+)NCBI
Dog10K_Boxer_Tasha920,702,551 - 20,706,814 (+)NCBI
ROS_Cfam_1.0921,961,705 - 21,965,969 (+)NCBI
UMICH_Zoey_3.1920,747,715 - 20,751,978 (+)NCBI
UNSW_CanFamBas_1.0921,013,735 - 21,018,001 (+)NCBI
UU_Cfam_GSD_1.0921,117,527 - 21,121,798 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001240671 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABV03356 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001240671   ⟸   NM_001253742
- UniProtKB: A0A8C0KY15 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
IF rod

Promoters
RGD ID:13684534
Promoter ID:EPDNEW_C2603
Type:single initiation site
Name:KRT19_1
Description:keratin 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1921,240,722 - 21,240,782EPDNEW

Additional Information

Database Acc Id Source(s)
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_I UniProtKB/TrEMBL
NCBI Gene KRT19 ENTREZGENE
PANTHER KERATIN, TYPE I CYTOSKELETAL 19 UniProtKB/TrEMBL
  PTHR23239 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A8C0KY15 ENTREZGENE
  A7XZY9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:42519 ENTREZGENE