TXNDC2 (thioredoxin domain containing 2) - Rat Genome Database

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Gene: TXNDC2 (thioredoxin domain containing 2) Canis lupus familiaris
Analyze
Symbol: TXNDC2
Name: thioredoxin domain containing 2
RGD ID: 12415884
Description: ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); thioredoxin-disulfide reductase (NADPH) activity (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); flagellated sperm motility (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); intellectual disability (ortholog); FOUND IN outer dense fiber (ortholog); sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thioredoxin domain-containing 2 (spermatozoa); thioredoxin domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,822,005 - 75,824,032 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,822,013 - 75,824,007 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha775,219,566 - 75,221,603 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,879,581 - 75,884,366 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1775,580,645 - 75,582,689 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,598,431 - 75,600,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,907,762 - 75,909,799 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TXNDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,822,005 - 75,824,032 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,822,013 - 75,824,007 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha775,219,566 - 75,221,603 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,879,581 - 75,884,366 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1775,580,645 - 75,582,689 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,598,431 - 75,600,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,907,762 - 75,909,799 (+)NCBIUU_Cfam_GSD_1.0
TXNDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,885,973 - 9,889,275 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,885,766 - 9,889,275 (+)EnsemblGRCh38hg38GRCh38
GRCh37189,885,970 - 9,889,272 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,875,362 - 9,878,156 (+)NCBINCBI36Build 36hg18NCBI36
Build 34189,875,801 - 9,878,155NCBI
Celera189,769,333 - 9,771,721 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,847,996 - 9,850,429 (+)NCBIHuRef
CHM1_1189,884,991 - 9,887,424 (+)NCBICHM1_1
T2T-CHM13v2.01810,049,441 - 10,052,739 (+)NCBIT2T-CHM13v2.0
Txndc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391765,944,498 - 65,955,871 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1765,944,502 - 65,949,163 (-)EnsemblGRCm39 Ensembl
GRCm381765,637,505 - 65,648,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,637,507 - 65,642,168 (-)EnsemblGRCm38mm10GRCm38
MGSCv371765,986,845 - 65,991,544 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361765,537,057 - 65,539,299 (-)NCBIMGSCv36mm8
Celera1769,940,903 - 69,945,602 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1734.99NCBI
Txndc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,677,459 - 112,682,027 (-)NCBIGRCr8
mRatBN7.29105,230,575 - 105,235,131 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,230,578 - 105,235,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,640,107 - 113,644,712 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,751,364 - 118,755,868 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,106,057 - 117,110,666 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,354,047 - 113,358,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,354,053 - 113,358,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09112,886,277 - 112,890,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,391,636 - 104,396,147 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,601,119 - 104,605,609 (-)NCBI
Celera9102,617,140 - 102,621,651 (-)NCBICelera
Cytogenetic Map9q37NCBI
Txndc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554022,339,130 - 2,341,283 (-)NCBIChiLan1.0ChiLan1.0
TXNDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,560,175 - 28,565,275 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,252,770 - 14,257,870 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,397,565 - 4,401,236 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,681,552 - 6,683,778 (-)NCBIpanpan1.1PanPan1.1panPan2
Txndc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,380,217 - 2,382,276 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366261,608,877 - 1,610,472 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXNDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1698,271,124 - 98,276,039 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TXNDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,757,934 - 68,760,701 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,758,946 - 68,760,537 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,713,693 - 43,715,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txndc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477018,383,444 - 18,385,340 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TXNDC2
39 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 31 20 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005623084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022421634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022421635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005430389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000029729   ⟹   ENSCAFP00000027629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl775,822,013 - 75,824,007 (+)Ensembl
RefSeq Acc Id: XM_005623084   ⟹   XP_005623141
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1775,822,030 - 75,824,032 (+)NCBI
Dog10K_Boxer_Tasha775,219,568 - 75,221,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022421634   ⟹   XP_022277342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1775,822,018 - 75,824,032 (+)NCBI
Dog10K_Boxer_Tasha775,219,566 - 75,221,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022421635   ⟹   XP_022277343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1775,822,005 - 75,824,032 (+)NCBI
Dog10K_Boxer_Tasha775,219,578 - 75,221,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038482411   ⟹   XP_038338339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1775,580,645 - 75,582,689 (+)NCBI
RefSeq Acc Id: XM_038482412   ⟹   XP_038338340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1775,580,647 - 75,582,689 (+)NCBI
RefSeq Acc Id: XM_038482413   ⟹   XP_038338341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1775,580,657 - 75,582,689 (+)NCBI
RefSeq Acc Id: XM_038543868   ⟹   XP_038399796
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0775,907,762 - 75,909,799 (+)NCBI
RefSeq Acc Id: XM_038543869   ⟹   XP_038399797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0775,907,764 - 75,909,799 (+)NCBI
RefSeq Acc Id: XM_038543870   ⟹   XP_038399798
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0775,907,774 - 75,909,799 (+)NCBI
RefSeq Acc Id: XM_038607979   ⟹   XP_038463907
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0775,598,431 - 75,600,468 (+)NCBI
RefSeq Acc Id: XM_038607980   ⟹   XP_038463908
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0775,598,433 - 75,600,468 (+)NCBI
RefSeq Acc Id: XM_038607981   ⟹   XP_038463909
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0775,598,443 - 75,600,468 (+)NCBI
RefSeq Acc Id: XM_038672671   ⟹   XP_038528599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0775,882,332 - 75,884,366 (+)NCBI
RefSeq Acc Id: XM_038672672   ⟹   XP_038528600
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0775,882,342 - 75,884,366 (+)NCBI
RefSeq Acc Id: XR_005430389
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0775,879,581 - 75,883,176 (+)NCBI
RefSeq Acc Id: XP_005623141   ⟸   XM_005623084
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QD83 (UniProtKB/TrEMBL),   A0A8P0SMQ7 (UniProtKB/TrEMBL),   A0A8C0LIG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277343   ⟸   XM_022421635
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LIG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277342   ⟸   XM_022421634
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QD83 (UniProtKB/TrEMBL),   A0A8P0SMQ7 (UniProtKB/TrEMBL),   A0A8C0LIG2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000027629   ⟸   ENSCAFT00000029729
RefSeq Acc Id: XP_038338339   ⟸   XM_038482411
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338340   ⟸   XM_038482412
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338341   ⟸   XM_038482413
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038463907   ⟸   XM_038607979
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038463908   ⟸   XM_038607980
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038463909   ⟸   XM_038607981
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038528599   ⟸   XM_038672671
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MX98 (UniProtKB/TrEMBL),   A0A8C0LIG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528600   ⟸   XM_038672672
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LIG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399796   ⟸   XM_038543868
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LIG2 (UniProtKB/TrEMBL),   A0A8C0QD83 (UniProtKB/TrEMBL),   A0A8P0SMQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399797   ⟸   XM_038543869
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LIG2 (UniProtKB/TrEMBL),   A0A8C0QD83 (UniProtKB/TrEMBL),   A0A8P0SMQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399798   ⟸   XM_038543870
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LIG2 (UniProtKB/TrEMBL)
Protein Domains
Thioredoxin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018730 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030005413 UniProtKB/TrEMBL
  ENSCAFG00040006508 UniProtKB/TrEMBL
  ENSCAFG00845004677 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029729.5 UniProtKB/TrEMBL
  ENSCAFT00030009902.1 UniProtKB/TrEMBL
  ENSCAFT00040012105.1 UniProtKB/TrEMBL
  ENSCAFT00845008359 ENTREZGENE
  ENSCAFT00845008359.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
KEGG Report cfa:490552 UniProtKB/TrEMBL
NCBI Gene TXNDC2 ENTREZGENE
PANTHER THIOREDOXIN UniProtKB/TrEMBL
  THIOREDOXIN-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
PROSITE THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A8C0LIG2 ENTREZGENE
  A0A8C0QD83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RD78_CANLF UniProtKB/TrEMBL
  A0A8I3MX98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SMQ7 ENTREZGENE
UniProt Secondary A0A8P0SMQ7 UniProtKB/TrEMBL
VGNC ID VGNC:48014 ENTREZGENE