SORD (sorbitol dehydrogenase) - Rat Genome Database

Name: SORD
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: SORD (sorbitol dehydrogenase) Canis lupus familiaris

Analyze

Symbol:

SORD

Name:

sorbitol dehydrogenase

RGD ID:

12413842

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion binding (ortholog); INVOLVED IN response to cadmium ion (ortholog); response to copper ion (ortholog); response to hormone (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); cataract (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SORD (sorbitol dehydrogenase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sord (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sord (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sord (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SORD (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sord (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SORD (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SORD (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sord (sorbitol dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	11,467,259 - 11,501,166 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	11,467,253 - 11,500,641 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	11,523,461 - 11,557,483 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	11,603,460 - 11,637,883 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	11,603,473 - 11,637,887 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	11,509,757 - 11,544,158 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	11,632,822 - 11,666,883 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	11,751,896 - 11,786,120 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

AGAT deficiency (ISO)

Bloom syndrome (ISO)

cataract (ISO)

Charcot-Marie-Tooth disease (ISO)

Chemical and Drug Induced Liver Injury (ISO)

colorectal cancer (ISO)

diabetic neuropathy (ISO)

Experimental Diabetes Mellitus (ISO)

genetic disease (ISO)

multiple chemical sensitivity (ISO)

Myocardial Reperfusion Injury (ISO)

neuropathy (ISO)

perinatal necrotizing enterocolitis (ISO)

peripheral nervous system disease (ISO)

Sorbitol Dehydrogenase Deficiency with Peripheral Neuropathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

flagellated sperm motility (IEA)

fructose biosynthetic process (IEA)

glucuronate catabolic process to xylulose 5-phosphate (IEA)

L-xylitol catabolic process (IEA)

L-xylitol metabolic process (IEA)

response to cadmium ion (ISO)

response to copper ion (ISO)

response to hormone (ISO)

response to nutrient levels (ISO)

response to osmotic stress (ISO)

response to xenobiotic stimulus (ISO)

sorbitol catabolic process (IBA,IEA)

sorbitol metabolic process (IEA,ISO)

Cellular Component

cytosol (IEA,ISO)

extracellular exosome (IEA)

membrane (IEA)

mitochondrial membrane (IEA)

mitochondrion (IEA)

motile cilium (IEA)

Molecular Function

D-sorbitol dehydrogenase (acceptor) activity (IEA)

D-xylulose reductase activity (IEA)

identical protein binding (IEA,ISO)

L-iditol 2-dehydrogenase activity (IBA,IEA)

metal ion binding (IEA)

NAD binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (IEA)

zinc ion binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

fructose and mannose metabolic pathway (ISO)

fructosuria pathway (ISO)

hereditary fructose intolerance syndrome pathway (ISO)

References

Genomics

Comparative Map Data

SORD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	11,467,259 - 11,501,166 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	11,467,253 - 11,500,641 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	11,523,461 - 11,557,483 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	11,603,460 - 11,637,883 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	11,603,473 - 11,637,887 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	11,509,757 - 11,544,158 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	11,632,822 - 11,666,883 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	11,751,896 - 11,786,120 (+)	NCBI		UU_Cfam_GSD_1.0

SORD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	45,023,195 - 45,077,185 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	15	45,023,147 - 45,077,185 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	45,315,393 - 45,369,383 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	43,102,633 - 43,154,331 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	43,102,643 - 43,154,330	NCBI
Celera	15	22,206,385 - 22,258,718 (+)	NCBI		Celera
Cytogenetic Map	15	q21.1	NCBI
HuRef	15	22,139,528 - 22,191,494 (+)	NCBI		HuRef
CHM1_1	15	45,433,621 - 45,485,599 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	42,831,215 - 42,885,202 (+)	NCBI		T2T-CHM13v2.0

Sord
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	122,065,320 - 122,095,818 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	122,065,230 - 122,095,821 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	122,234,839 - 122,265,337 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	122,234,749 - 122,265,340 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	122,060,575 - 122,091,073 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	121,926,280 - 121,956,778 (+)	NCBI		MGSCv36	mm8
Celera	2	123,384,583 - 123,415,681 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.59	NCBI

Sord
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	109,184,697 - 109,216,133 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	109,184,676 - 109,216,133 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	112,858,692 - 112,889,823 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	121,454,207 - 121,485,340 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	119,114,585 - 119,145,718 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	114,176,127 - 114,207,368 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	114,176,309 - 114,207,366 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	120,716,804 - 120,746,951 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	109,016,830 - 109,048,446 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	108,922,464 - 108,953,299 (+)	NCBI
Celera	3	108,082,883 - 108,113,935 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Sord
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	8,303,602 - 8,333,869 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	8,305,819 - 8,333,733 (-)	NCBI	ChiLan1.0	ChiLan1.0

SORD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	42,363,854 - 42,375,848 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	15	23,971,017 - 24,025,043 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

Sord
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	89,912,015 - 89,957,526 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	7,760,052 - 7,795,671 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936471	7,760,097 - 7,805,475 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SORD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	126,655,156 - 126,701,138 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	126,659,198 - 126,701,084 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	141,259,120 - 141,301,021 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SORD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	38,129,236 - 38,173,867 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	38,126,911 - 38,155,381 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	102,884,429 - 102,931,888 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sord
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	14,156,522 - 14,185,989 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	14,159,439 - 14,185,960 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SORD
330 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	22	6	6	6	6	3	12	8	9	6
Low								3			1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038442197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038516663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038580295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_544659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCAFT00000021685 ⟹ ENSCAFP00000020140

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	11,467,253 - 11,500,641 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845051149 ⟹ ENSCAFP00845040108

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	30	11,603,473 - 11,637,887 (+)	Ensembl

RefSeq Acc Id:

XM_038442197 ⟹ XP_038298125

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	11,603,460 - 11,637,883 (+)	NCBI

RefSeq Acc Id:

XM_038516663 ⟹ XP_038372591

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	11,509,757 - 11,544,158 (+)	NCBI

RefSeq Acc Id:

XM_038580295 ⟹ XP_038436223

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	11,751,896 - 11,786,120 (+)	NCBI

RefSeq Acc Id:

XM_038644578 ⟹ XP_038500506

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	11,632,822 - 11,666,883 (+)	NCBI

RefSeq Acc Id:

XM_544659 ⟹ XP_544659

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	11,467,259 - 11,501,166 (+)	NCBI
Dog10K_Boxer_Tasha	30	11,523,461 - 11,557,483 (+)	NCBI

Sequence:

show sequence

CGTCCCGCGGACTGCAGCCTCGACCCAGGAGGGAGAGCACGACATGGCGGCGGCCAAGGCCGAG
AACCTCACCCTGGTGGTGCACGGACCCGGAGACCTGCGCCTGGAGAACTATCCTATCCCAGAAC
CAGGCCCAAATGAAGTACTGCTGAAGATGCATTCCGTCGGAATCTGTGGCTCAGATGTCCACTA
CTGGCAGCATGGTCGAATTGGGGATTTTATTGTGAAAAAGCCAATGGTGCTGGGGCATGAAGCT
TCAGGAACAGTCGTAAAAGTGGGATCACTGGTAAAGCACCTAAAATCAGGGGATCGTGTTGCCA
TCGAGCCTGGTGCTCTGCGAGAAATGGATGAATTCTGCAAGATTGGCCGGTACAATCTGTCACC
ATCTATCTTCTTCTGTGCCACACCCCCTGATGATGGGAACCTCTGCCAGTTTTATAAGCACAAC
GCTGACTTCTGCTACAAGCTTCCTGACAATGTCACCTATGAAGAAGGGGCCCTGATTGAGCCAC
TGTCTGTGGGGATCCATGCCTGTCGGCGAGCTGGAATCACCCTGGGGAACAAGGTCTTAGTGTG
TGGAGCTGGGCCGATTGGACTGGTCACTCTGATTGTGGCCAAGGCAATGGGTGCAGGTCAAGTG
CTGGTGACTGATCTGTCTGCCTCTCGGTTGTCTAAAGCCAAGGAAGTTGGGGCTGATATCGTCC
TCCAGATCTCCAAGGAGAGCCCTAAGGAAATAGCCAGTAAAGTGGAAGATATGCTGGGGTGCAA
GCCAGAAGCGACCATCGAGTGCACAGGGGTGGAGTCCGCCATCCAGTCAGGCATCTATGCTACT
CGTGCTGGGGGGACCCTGGTGCTCGTAGGGCTGGGCTCCGAGATGACCACGGTGCCCCTAACAC
ACGCAAGCACCCGGGAGGTGGATATCAAGGGCGTGTTCCGATATTGCAACACGTGGCCGATGGC
AATTTCAATGCTTGCGTCCAAGGCTGTGAATGTAAAGCCCTTAGTTACTCATAGGTTTCCTCTG
GAGAAAGCTCTGGAGGCCTTTGAAACAGCCAGAAAGGGAACGGGGTTGAAAGTCATGCTCAAGT
GCGACCCCAACGACCAGAATCCCTAATATTAATTGGGCTCTGCCCTCATCCTCCCACCCCCACA
CAGAGCCAGTATCTCAGGGCAGGTGGGCTTTGATGCAGAAGTTTCTTTTGAGTAGCAGAAATAA
TTAAAATAATTCATTATAAGCAGAAAGCCTTACACAGAGGAATTGGTGTGCCTTAAAAACACAG
TAGGGAGAGTTTGGGGGAATTTGCAGCCAGAGTGACCTACTCATCCAGAGCAAAGTTCAGCAAA
TGGAGCCAGGTTAGGCAGGTGCTGGGAACTCCCCTTCTTCCTGGAGTGCCTAAATCAGGAAAGA
AATCTGCCCCTTGGGTTCCTGGTTCCACTGTGACTGGCCAGTTGGGGGGTGGGAGCTAAATTAT
GAAGAGATAACTTTATCCAGACTTGACTGGCACAGAAATTGATTTTCACGAAAACCTCAGTTTG
TGACATGAATGTGTCAGCCATTTTTAGAGCACAGTGTTTCTAGATATAAGTGCTGTTTAGTTTG
ATGATAAAAGGAGACTTTAAGGGACTGACCTTCTTGGGTCTAGGATAAGTTTTAAGTCAATTTA
AAAAAACCCACGAACTGAAATCCCACATGAGGGCCAACCAGCTTGCACATCCTCCAAAGGTAGA
AATAGGGAAGTTCTCAGTACAGCTTGAAGATTGCCTCTTCTTCAACTCCTGAGAACTGTGTAAC
CTAAACTGTCTTCCCAACACCCCCCTCCCCCCACCAACCCATCTGCAGATTCAGAGGCAGTCAC
CTGGGGGGGGGGGTTCCTTTGTCGCTAGGCAACCAGGAGGCTCCTTCCTCAGGGCAGCAGTCAA
GGGGAGTCCTCCTGGGAGACCTGCCCAGGAGGGTTTGGCCAGTGTACCTGTCCTCCCCCTCCAG
CCCCAGGCTTAGCATTCCCTTCACCCTCCCTGATGATGATGATAGGCAATTCCATTTATTTCTG
ATCATTATAAACAGAAATCCCTCCTCCTTACCTGTTAACACTCTTGTTATTTTTTCTCTTGGAA
TGATCTTTCCAATTGTATTTTAATCGTGGAGCTTTCCTCTGTAAACACGATTTGGGTCCAAATC
ACTTTATGCCCATTTGTGACTTTGAGATTATTAGTCAAGAATGAGGATATTGCAGCTGTGACAT
AACTTGGGTTGCAGCCTTTTAATCCTTCCCTTCATCTGGAAGTGCATCTTTTTTGTGAAGAGGC
TCTGGCTTTCTTGTGACTGGGGAGCTTTTTGACCAATGCTTGGAATTCCTCAAACTGCTTTGGG
TAATAAATTGTCCTTGTGGTGCCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038298125	(Get FASTA)	NCBI Sequence Viewer
	XP_038372591	(Get FASTA)	NCBI Sequence Viewer
	XP_038436223	(Get FASTA)	NCBI Sequence Viewer
	XP_038500506	(Get FASTA)	NCBI Sequence Viewer
	XP_544659	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_544659 ⟸ XM_544659

- UniProtKB:

F1PXG0 (UniProtKB/TrEMBL), A0A8C0NKQ6 (UniProtKB/TrEMBL), A0A8C0L8S0 (UniProtKB/TrEMBL), A0A8I3QI05 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAKAENLTLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFIVKKP
MVLGHEASGTVVKVGSLVKHLKSGDRVAIEPGALREMDEFCKIGRYNLSPSIFFCATPPDDGNL
CQFYKHNADFCYKLPDNVTYEEGALIEPLSVGIHACRRAGITLGNKVLVCGAGPIGLVTLIVAK
AMGAGQVLVTDLSASRLSKAKEVGADIVLQISKESPKEIASKVEDMLGCKPEATIECTGVESAI
QSGIYATRAGGTLVLVGLGSEMTTVPLTHASTREVDIKGVFRYCNTWPMAISMLASKAVNVKPL
VTHRFPLEKALEAFETARKGTGLKVMLKCDPNDQNP

hide sequence

RefSeq Acc Id:

ENSCAFP00000020140 ⟸ ENSCAFT00000021685

RefSeq Acc Id:

XP_038372591 ⟸ XM_038516663

RefSeq Acc Id:

XP_038500506 ⟸ XM_038644578

RefSeq Acc Id:	XP_038298125 ⟸ XM_038442197
- UniProtKB:	A0A8C0NKQ6 (UniProtKB/TrEMBL), A0A8C0L8S0 (UniProtKB/TrEMBL), A0A8I3QI05 (UniProtKB/TrEMBL)

RefSeq Acc Id:

XP_038436223 ⟸ XM_038580295

RefSeq Acc Id:

ENSCAFP00845040108 ⟸ ENSCAFT00845051149

Protein Domains

Enoyl reductase (ER)

Promoters

RGD ID:

13688510

Promoter ID:

EPDNEW_C6576

Type:

multiple initiation site

Name:

SORD_1

Description:

sorbitol dehydrogenase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	11,467,267 - 11,467,327	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013672	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013674	UniProtKB/TrEMBL
	ENSCAFG00040022226	UniProtKB/TrEMBL
	ENSCAFG00845028851	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSCAFP00000020140.3	UniProtKB/TrEMBL
	ENSCAFP00030022160.1	UniProtKB/TrEMBL
	ENSCAFP00040036031	UniProtKB/TrEMBL
	ENSCAFP00845040108	ENTREZGENE
	ENSCAFP00845040108.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000021685.5	UniProtKB/TrEMBL
	ENSCAFT00030025371.1	UniProtKB/TrEMBL
	ENSCAFT00040041316	UniProtKB/TrEMBL
	ENSCAFT00845051149	ENTREZGENE
	ENSCAFT00845051149.1	UniProtKB/TrEMBL
Gene3D-CATH	Medium-chain alcohol dehydrogenases, catalytic domain	UniProtKB/TrEMBL
	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	ADH_C	UniProtKB/TrEMBL
	ADH_N	UniProtKB/TrEMBL
	ADH_Zn_CS	UniProtKB/TrEMBL
	GroES-like_sf	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	PKS_ER	UniProtKB/TrEMBL
	SDH-like	UniProtKB/TrEMBL
NCBI Gene	SORD	ENTREZGENE
PANTHER	SORBITOL DEHYDROGENASE	UniProtKB/TrEMBL
	SORBITOL DEHYDROGENASE	UniProtKB/TrEMBL
Pfam	ADH_N	UniProtKB/TrEMBL
	ADH_zinc_N	UniProtKB/TrEMBL
PROSITE	ADH_ZINC	UniProtKB/TrEMBL
SMART	PKS_ER	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50129	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
UniProt	A0A8C0L8S0	ENTREZGENE
	A0A8C0NKQ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QI05	ENTREZGENE, UniProtKB/TrEMBL
	F1PXG0	ENTREZGENE
VGNC ID	VGNC:46662	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB