LOC486445 (RIMS-binding protein 3A-like) - Rat Genome Database

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Gene: LOC486445 (RIMS-binding protein 3A-like) Canis lupus familiaris
Analyze
Symbol: LOC486445
Name: RIMS-binding protein 3A-like
RGD ID: 12413278
Description: ENCODES a protein that exhibits benzodiazepine receptor binding (inferred); INVOLVED IN fertilization (inferred); spermatid development (inferred); ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); genetic disease (ortholog); FOUND IN manchette (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,819,266 - 30,824,791 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,776,985 - 30,782,513 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02632,224,478 - 32,230,006 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12630,273,966 - 30,279,493 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,897,997 - 29,903,525 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,987,818 - 30,993,345 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
manchette  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC486445
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,819,266 - 30,824,791 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,776,985 - 30,782,513 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02632,224,478 - 32,230,006 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12630,273,966 - 30,279,493 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,897,997 - 29,903,525 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,987,818 - 30,993,345 (-)NCBIUU_Cfam_GSD_1.0
RIMBP3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,545,666 - 21,551,461 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,545,666 - 21,551,461 (-)EnsemblGRCh38hg38GRCh38
GRCh372221,899,955 - 21,905,750 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,229,646 - 20,235,750 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map22q11.21NCBI
HuRef223,946,770 - 3,952,565 (-)NCBIHuRef
CHM1_12221,900,248 - 21,905,951 (-)NCBICHM1_1
T2T-CHM13v2.02221,796,920 - 21,802,715 (+)NCBIT2T-CHM13v2.0
Rimbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,025,999 - 17,031,846 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,026,467 - 17,031,846 (+)EnsemblGRCm39 Ensembl
GRCm381617,208,135 - 17,213,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,208,603 - 17,213,982 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,208,228 - 17,214,075 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,122,548 - 17,127,484 (+)NCBIMGSCv36mm8
Celera1617,780,950 - 17,786,797 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.67NCBI
Rimbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,288,041 - 97,293,616 (-)NCBIGRCr8
mRatBN7.21183,783,816 - 83,789,391 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,784,244 - 83,789,082 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01188,033,213 - 88,039,002 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,033,180 - 88,038,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01191,087,058 - 91,092,550 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,786,898 - 85,792,478 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1182,546,116 - 82,551,905 (-)NCBICelera
Cytogenetic Map11q23NCBI
RIMBP3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22331,090,385 - 31,096,194 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,639,177 - 33,644,959 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,668,133 - 3,673,619 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC100153093
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11450,323,037 - 50,331,111 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,775,028 - 53,780,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rimbp3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247471,110,596 - 1,115,995 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LOC486445
40 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038437619   ⟹   XP_038293547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02632,224,478 - 32,230,006 (-)NCBI
RefSeq Acc Id: XM_038512484   ⟹   XP_038368412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12630,273,966 - 30,279,493 (-)NCBI
RefSeq Acc Id: XM_038575981   ⟹   XP_038431909
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02630,987,818 - 30,993,345 (-)NCBI
RefSeq Acc Id: XM_038640191   ⟹   XP_038496119
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02629,897,997 - 29,903,525 (-)NCBI
RefSeq Acc Id: XM_543571   ⟹   XP_543571
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12630,819,266 - 30,824,791 (-)NCBI
Dog10K_Boxer_Tasha2630,776,985 - 30,782,513 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_543571   ⟸   XM_543571
- UniProtKB: A0A8P0SWZ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038368412   ⟸   XM_038512484
RefSeq Acc Id: XP_038496119   ⟸   XM_038640191
RefSeq Acc Id: XP_038293547   ⟸   XM_038437619
- UniProtKB: A0A8C0PEK3 (UniProtKB/TrEMBL),   A0A8I3PLP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431909   ⟸   XM_038575981
- UniProtKB: A0A8C0KN48 (UniProtKB/TrEMBL),   A0A8C0THB4 (UniProtKB/TrEMBL)
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000044607 UniProtKB/TrEMBL
  ENSCAFG00030025272 UniProtKB/TrEMBL
  ENSCAFG00040021944 UniProtKB/TrEMBL
  ENSCAFG00845025717 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000081847.2 UniProtKB/TrEMBL
  ENSCAFT00030046637.1 UniProtKB/TrEMBL
  ENSCAFT00040040726.1 UniProtKB/TrEMBL
  ENSCAFT00845045396 ENTREZGENE
  ENSCAFT00845045396.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  RIMBP1/2/3 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report cfa:486445 UniProtKB/TrEMBL
NCBI Gene LOC486445 ENTREZGENE
PANTHER PTHR14234 UniProtKB/TrEMBL
  PTHR14234:SF21 UniProtKB/TrEMBL
Pfam SH3_2 UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A8C0KN48 ENTREZGENE
  A0A8C0PEK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0THB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SWZ4 ENTREZGENE, UniProtKB/TrEMBL