SLURP2 (secreted LY6/PLAUR domain containing 2) - Rat Genome Database

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Gene: SLURP2 (secreted LY6/PLAUR domain containing 2) Canis lupus familiaris
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Symbol: SLURP2
Name: secreted LY6/PLAUR domain containing 2
RGD ID: 12412134
Description: ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); acetylcholine receptor regulator activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ly-6/neurotoxin-like protein 1; Ly6/neurotoxin 1; LYNX1; secreted Ly-6/uPAR domain-containing protein 2; secreted Ly-6/uPAR-related protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11336,800,267 - 36,808,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,675,793 - 36,681,010 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,203,221 - 37,208,442 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11336,921,934 - 36,927,146 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,011,645 - 37,016,776 (-)NCBIUNSW_CanFamBas_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SLURP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11336,800,267 - 36,808,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,675,793 - 36,681,010 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,203,221 - 37,208,442 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11336,921,934 - 36,927,146 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,011,645 - 37,016,776 (-)NCBIUNSW_CanFamBas_1.0
SLURP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388142,764,338 - 142,769,828 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8142,764,338 - 142,769,828 (-)EnsemblGRCh38hg38GRCh38
GRCh378143,845,756 - 143,851,246 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q24.3NCBI
T2T-CHM13v2.08143,907,780 - 143,913,270 (-)NCBIT2T-CHM13v2.0
Lynx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,619,705 - 74,624,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1574,619,701 - 74,624,895 (-)EnsemblGRCm39 Ensembl
GRCm381574,747,856 - 74,752,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,747,852 - 74,753,046 (-)EnsemblGRCm38mm10GRCm38
MGSCv371574,578,286 - 74,583,409 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361574,575,111 - 74,580,234 (-)NCBIMGSCv36mm8
Celera1576,252,812 - 76,257,935 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.27NCBI
Slurp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87108,516,758 - 108,520,638 (-)NCBIGRCr8
mRatBN7.27106,627,775 - 106,631,655 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7106,627,775 - 106,631,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7108,385,863 - 108,389,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07110,609,542 - 110,613,422 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07110,555,472 - 110,559,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07115,977,854 - 115,981,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7115,977,852 - 115,981,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07115,883,243 - 115,887,123 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47112,857,541 - 112,861,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17112,891,770 - 112,895,648 (-)NCBI
Celera7103,028,923 - 103,032,803 (-)NCBICelera
Cytogenetic Map7q34NCBI
SLURP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,201,146 - 160,207,880 (-)NCBINHGRI_mPanPan1-v2
Slurp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,690,055 - 1,693,487 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364709,116,363 - 9,119,586 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0

Variants

.
Variants in SLURP2
117 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005628016   ⟹   XP_005628073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11336,800,267 - 36,808,315 (-)NCBI
Dog10K_Boxer_Tasha1336,675,793 - 36,681,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038493434   ⟹   XP_038349362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11336,921,934 - 36,927,146 (-)NCBI
RefSeq Acc Id: XM_038619602   ⟹   XP_038475530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01337,011,645 - 37,016,776 (-)NCBI
RefSeq Acc Id: XM_038685216   ⟹   XP_038541144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01337,203,221 - 37,208,442 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005628073   ⟸   XM_005628016
- UniProtKB: A0A8C0L203 (UniProtKB/TrEMBL),   A0A8C0S5D7 (UniProtKB/TrEMBL),   A0A8I3NT88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038349362   ⟸   XM_038493434
RefSeq Acc Id: XP_038475530   ⟸   XM_038619602
RefSeq Acc Id: XP_038541144   ⟸   XM_038685216
- UniProtKB: A0A8C0L203 (UniProtKB/TrEMBL),   A0A8C0S5D7 (UniProtKB/TrEMBL),   A0A8I3NT88 (UniProtKB/TrEMBL)
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024408 UniProtKB/TrEMBL
  ENSCAFG00030011393 UniProtKB/TrEMBL
  ENSCAFG00040010056 UniProtKB/TrEMBL
  ENSCAFG00845014227 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000097180.1 UniProtKB/TrEMBL
  ENSCAFT00030021150.1 UniProtKB/TrEMBL
  ENSCAFT00040018636.1 UniProtKB/TrEMBL
  ENSCAFT00845025562.1 UniProtKB/TrEMBL
Gene3D-CATH CD59 UniProtKB/TrEMBL
InterPro LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene LYNX1 ENTREZGENE
PANTHER SECRETED LY-6/UPAR DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  UPAR/LY6 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
Superfamily-SCOP Snake toxin-like UniProtKB/TrEMBL
UniProt A0A8C0L203 ENTREZGENE
  A0A8C0S5D7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NT88 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 SLURP2  secreted LY6/PLAUR domain containing 2  LYNX1  Ly6/neurotoxin 1  Symbol and/or name change 5135510 APPROVED