UTRN (utrophin) - Rat Genome Database

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Gene: UTRN (utrophin) Canis lupus familiaris
Analyze
Symbol: UTRN
Name: utrophin
RGD ID: 12410885
Description: ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN neuromuscular junction development (ortholog); response to denervation involved in regulation of muscle adaptation (ortholog); ASSOCIATED WITH Duchenne muscular dystrophy (ortholog); genetic disease (ortholog); ovarian cancer (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); growth cone (ortholog); neuromuscular junction (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: urotrophin; utrophin (homologous to dystrophin)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,727,531 - 36,225,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl135,677,814 - 36,224,065 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,627,086 - 37,115,507 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,906,556 - 36,401,715 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,845,084 - 36,401,052 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,775,436 - 36,264,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,651,671 - 36,139,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,969,567 - 36,458,179 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:18458171   PMID:22301074   PMID:30032202   PMID:30404858   PMID:31591596   PMID:37756605  


Genomics

Comparative Map Data
UTRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,727,531 - 36,225,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl135,677,814 - 36,224,065 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,627,086 - 37,115,507 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,906,556 - 36,401,715 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,845,084 - 36,401,052 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,775,436 - 36,264,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,651,671 - 36,139,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,969,567 - 36,458,179 (+)NCBIUU_Cfam_GSD_1.0
UTRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386144,285,335 - 144,853,034 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6144,285,335 - 144,853,034 (+)EnsemblGRCh38hg38GRCh38
GRCh376144,606,471 - 145,174,170 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366144,654,566 - 145,215,863 (+)NCBINCBI36Build 36hg18NCBI36
Build 346144,654,657 - 145,209,657NCBI
Celera6145,353,235 - 145,914,469 (+)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6142,176,382 - 142,737,622 (+)NCBIHuRef
CHM1_16144,875,601 - 145,437,493 (+)NCBICHM1_1
T2T-CHM13v2.06145,477,963 - 146,045,651 (+)NCBIT2T-CHM13v2.0
Utrn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391012,257,931 - 12,745,632 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1012,257,932 - 12,745,109 (-)EnsemblGRCm39 Ensembl
GRCm381012,382,187 - 12,869,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1012,382,188 - 12,869,365 (-)EnsemblGRCm38mm10GRCm38
MGSCv371012,101,986 - 12,581,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,073,568 - 12,551,836 (-)NCBIMGSCv36mm8
Celera1012,282,524 - 12,766,578 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.77NCBI
Utrn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818,541,061 - 9,044,487 (-)NCBIGRCr8
mRatBN7.216,720,854 - 7,224,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl16,722,594 - 7,224,313 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx16,424,644 - 6,925,694 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0112,423,666 - 12,924,754 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.016,706,883 - 7,207,935 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.016,451,809 - 6,970,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl16,451,810 - 6,970,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,097,013 - 8,608,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,099,840 - 7,614,980 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,099,839 - 7,614,980 (-)NCBI
Celera15,228,645 - 5,725,909 (-)NCBICelera
RH 3.4 Map1104.42RGD
Cytogenetic Map1p13NCBI
Utrn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543615,730,020 - 16,231,919 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543615,730,416 - 16,237,379 (-)NCBIChiLan1.0ChiLan1.0
UTRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25164,274,877 - 164,842,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16162,169,685 - 162,737,303 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06142,069,139 - 142,636,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16146,786,654 - 147,353,226 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6146,793,153 - 147,351,210 (+)Ensemblpanpan1.1panPan2
Utrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946130,636,043 - 131,145,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366251,489,696 - 1,894,813 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366251,490,327 - 1,999,428 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTRN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl120,514,260 - 21,048,484 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1120,514,264 - 21,047,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2122,999,397 - 23,103,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UTRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11328,354,810 - 28,949,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1328,354,588 - 28,944,119 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040564,242 - 1,085,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Utrn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247539,554,240 - 9,984,058 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247539,548,914 - 10,090,635 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UTRN
5806 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 16 6 6 9 10 6
Low 1 6 6 6 6 3 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005615249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005615250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005615251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005615252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005615254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005615256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY095485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY514782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY583531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000000501   ⟹   ENSCAFP00000000453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,677,814 - 36,215,189 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000044228   ⟹   ENSCAFP00000039395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,677,814 - 36,224,065 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000047082   ⟹   ENSCAFP00000038981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,999,360 - 36,223,598 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066270   ⟹   ENSCAFP00000050719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,999,360 - 36,223,598 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075281   ⟹   ENSCAFP00000054808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,999,360 - 36,224,065 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077376   ⟹   ENSCAFP00000050661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,677,814 - 36,221,140 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000091864   ⟹   ENSCAFP00000060557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl135,999,360 - 36,224,065 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023087   ⟹   ENSCAFP00845018101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl135,845,084 - 36,397,322 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023227   ⟹   ENSCAFP00845018220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl135,845,084 - 36,391,359 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023283   ⟹   ENSCAFP00845018264
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl136,175,225 - 36,401,052 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023323   ⟹   ENSCAFP00845018299
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl136,175,227 - 36,401,052 (+)Ensembl
RefSeq Acc Id: NM_001012395   ⟹   NP_001012395
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1135,734,510 - 36,223,518 (+)NCBI
Dog10K_Boxer_Tasha136,627,086 - 37,115,507 (+)NCBI
ROS_Cfam_1.0135,913,407 - 36,399,701 (+)NCBI
UMICH_Zoey_3.1135,775,436 - 36,264,006 (+)NCBI
UNSW_CanFamBas_1.0135,651,671 - 36,139,451 (+)NCBI
UU_Cfam_GSD_1.0135,969,567 - 36,458,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038653442   ⟹   XP_038509370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,962,562 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653443   ⟹   XP_038509371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,906,556 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653444   ⟹   XP_038509372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,907,178 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653445   ⟹   XP_038509373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,907,526 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653446   ⟹   XP_038509374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,962,561 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653447   ⟹   XP_038509375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,949,724 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653448   ⟹   XP_038509376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,962,562 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653449   ⟹   XP_038509377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,906,556 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653450   ⟹   XP_038509378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0135,962,562 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653451   ⟹   XP_038509379
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0136,175,547 - 36,401,715 (+)NCBI
RefSeq Acc Id: XM_038653452   ⟹   XP_038509380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0136,175,600 - 36,401,715 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001012395   ⟸   NM_001012395
- UniProtKB: Q5JCF5 (UniProtKB/TrEMBL),   A0A8C0PZ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000050661   ⟸   ENSCAFT00000077376
RefSeq Acc Id: ENSCAFP00000000453   ⟸   ENSCAFT00000000501
RefSeq Acc Id: ENSCAFP00000039395   ⟸   ENSCAFT00000044228
RefSeq Acc Id: ENSCAFP00000050719   ⟸   ENSCAFT00000066270
RefSeq Acc Id: ENSCAFP00000060557   ⟸   ENSCAFT00000091864
RefSeq Acc Id: ENSCAFP00000038981   ⟸   ENSCAFT00000047082
RefSeq Acc Id: ENSCAFP00000054808   ⟸   ENSCAFT00000075281
RefSeq Acc Id: XP_038509377   ⟸   XM_038653449
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NQX0 (UniProtKB/TrEMBL),   A0A8P0P0F6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509371   ⟸   XM_038653443
- Peptide Label: isoform X2
- UniProtKB: A0A8C0QXY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509372   ⟸   XM_038653444
- Peptide Label: isoform X2
- UniProtKB: A0A8C0QXY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509373   ⟸   XM_038653445
- Peptide Label: isoform X2
- UniProtKB: A0A8C0QXY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509375   ⟸   XM_038653447
- Peptide Label: isoform X4
- UniProtKB: A0A8C0P060 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509374   ⟸   XM_038653446
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P060 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509376   ⟸   XM_038653448
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P031 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509370   ⟸   XM_038653442
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P060 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509378   ⟸   XM_038653450
- Peptide Label: isoform X7
- UniProtKB: A0A8C0P031 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509379   ⟸   XM_038653451
- Peptide Label: isoform X8
- UniProtKB: A0A8C0RPF7 (UniProtKB/TrEMBL),   A0A8C0NWS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509380   ⟸   XM_038653452
- Peptide Label: isoform X9
- UniProtKB: A0A8C0PZS7 (UniProtKB/TrEMBL),   A0A8I3NDA9 (UniProtKB/TrEMBL),   A0A8I3NND2 (UniProtKB/TrEMBL),   A0A8P0STF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845018299   ⟸   ENSCAFT00845023323
RefSeq Acc Id: ENSCAFP00845018101   ⟸   ENSCAFT00845023087
RefSeq Acc Id: ENSCAFP00845018220   ⟸   ENSCAFT00845023227
RefSeq Acc Id: ENSCAFP00845018264   ⟸   ENSCAFT00845023283
Protein Domains
Calponin-homology (CH)   WW   ZZ-type

Promoters
RGD ID:13681991
Promoter ID:EPDNEW_C61
Type:initiation region
Name:UTRN_1
Description:utrophin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1135,727,560 - 35,727,620EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000326 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018561 UniProtKB/TrEMBL
  ENSCAFG00040003801 UniProtKB/TrEMBL
  ENSCAFG00845012944 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000501.6 UniProtKB/TrEMBL
  ENSCAFT00000047082.3 UniProtKB/TrEMBL
  ENSCAFT00000066270.2 UniProtKB/TrEMBL
  ENSCAFT00000077376.2 UniProtKB/TrEMBL
  ENSCAFT00030036886.1 UniProtKB/TrEMBL
  ENSCAFT00030036988.1 UniProtKB/TrEMBL
  ENSCAFT00030037164.1 UniProtKB/TrEMBL
  ENSCAFT00030037356.1 UniProtKB/TrEMBL
  ENSCAFT00030037462.1 UniProtKB/TrEMBL
  ENSCAFT00030037653.1 UniProtKB/TrEMBL
  ENSCAFT00040007338.1 UniProtKB/TrEMBL
  ENSCAFT00040007363.1 UniProtKB/TrEMBL
  ENSCAFT00040007406.1 UniProtKB/TrEMBL
  ENSCAFT00845023087 ENTREZGENE
  ENSCAFT00845023087.1 UniProtKB/TrEMBL
  ENSCAFT00845023227.1 UniProtKB/TrEMBL
  ENSCAFT00845023283 ENTREZGENE
  ENSCAFT00845023283.1 UniProtKB/TrEMBL
  ENSCAFT00845023323 ENTREZGENE
  ENSCAFT00845023323.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Dystrophin/utrophin UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/TrEMBL
KEGG Report cfa:442965 UniProtKB/TrEMBL
NCBI Gene UTRN ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE KCMF1 UniProtKB/TrEMBL
  UTROPHIN UniProtKB/TrEMBL
Pfam EF-hand_2 UniProtKB/TrEMBL
  EF-hand_3 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  PF00569 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PIRSF Dystrophin/utrophin UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
  ZF_ZZ_1 UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/TrEMBL
SMART SM00033 UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
  SSF51045 UniProtKB/TrEMBL
UniProt A0A8C0NVU2_CANLF UniProtKB/TrEMBL
  A0A8C0NWS8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P031 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P060 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P3J3_CANLF UniProtKB/TrEMBL
  A0A8C0PZ46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PZ69_CANLF UniProtKB/TrEMBL
  A0A8C0PZS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QXY2 ENTREZGENE
  A0A8C0RPF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NDA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NEM4_CANLF UniProtKB/TrEMBL
  A0A8I3NND2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NQX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P0F6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0S6E8_CANLF UniProtKB/TrEMBL
  A0A8P0STF4 ENTREZGENE, UniProtKB/TrEMBL
  Q5JCF5 ENTREZGENE, UniProtKB/TrEMBL
  Q6JDF8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48215 ENTREZGENE