CDPF1 (cysteine rich DPF motif domain containing 1) - Rat Genome Database

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Gene: CDPF1 (cysteine rich DPF motif domain containing 1) Canis lupus familiaris
Analyze
Symbol: CDPF1
Name: cysteine rich DPF motif domain containing 1
RGD ID: 12409991
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C10H22orf40; cysteine-rich DPF motif domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,928,742 - 19,950,129 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,929,142 - 19,932,650 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,851,125 - 19,856,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,662,399 - 20,667,604 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11020,382,705 - 20,387,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,695,486 - 20,700,691 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,877,308 - 20,882,513 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CDPF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,928,742 - 19,950,129 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,929,142 - 19,932,650 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,851,125 - 19,856,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,662,399 - 20,667,604 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11020,382,705 - 20,387,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,695,486 - 20,700,691 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,877,308 - 20,882,513 (+)NCBIUU_Cfam_GSD_1.0
CDPF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,244,013 - 46,250,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,244,011 - 46,250,311 (-)EnsemblGRCh38hg38GRCh38
GRCh372246,639,910 - 46,646,190 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,018,574 - 45,024,857 (-)NCBINCBI36Build 36hg18NCBI36
Celera2230,547,295 - 30,553,578 (-)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,583,944 - 29,590,227 (-)NCBIHuRef
CHM1_12246,598,646 - 46,604,929 (-)NCBICHM1_1
T2T-CHM13v2.02246,728,714 - 46,734,994 (-)NCBIT2T-CHM13v2.0
Cdpf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,691,173 - 85,695,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,691,173 - 85,695,898 (-)EnsemblGRCm39 Ensembl
GRCm381585,806,972 - 85,811,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,806,972 - 85,811,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv371585,637,402 - 85,642,127 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,634,738 - 85,639,425 (-)NCBIMGSCv36mm8
Celera1587,939,034 - 87,943,764 (-)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Cdpf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,773,497 - 118,785,283 (-)NCBIGRCr8
mRatBN7.27116,896,672 - 116,905,438 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,901,003 - 116,905,406 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7118,651,787 - 118,656,221 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,877,415 - 120,881,849 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,846,976 - 120,851,410 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,687,404 - 126,692,783 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,687,405 - 126,691,232 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,398,400 - 126,402,804 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,812,743 - 123,816,570 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17123,846,971 - 123,850,798 (-)NCBI
Celera7113,193,057 - 113,196,884 (-)NCBICelera
Cytogenetic Map7q34NCBI
Cdpf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,366,346 - 30,368,864 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,366,346 - 30,372,210 (-)NCBIChiLan1.0ChiLan1.0
CDPF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,073,055 - 56,082,941 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,771,011 - 58,777,373 (-)NCBINHGRI_mPanPan1
PanPan1.12245,309,329 - 45,315,624 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,309,329 - 45,313,596 (-)Ensemblpanpan1.1panPan2
Cdpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,656,735 - 3,665,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,661,766 - 3,664,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,656,825 - 3,670,025 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDPF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,292,022 - 3,296,307 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,287,043 - 3,295,842 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25496,546 - 504,136 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDPF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,717,333 - 28,724,072 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,718,403 - 28,721,581 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604596,807,107 - 96,813,297 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdpf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,641,861 - 3,644,863 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247523,637,917 - 3,644,863 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDPF1
215 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 4 12 6 10 6
Low 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022424286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038636709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000001221   ⟹   ENSCAFP00000001117
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1019,929,142 - 19,932,650 (+)Ensembl
RefSeq Acc Id: XM_038488309   ⟹   XP_038344237
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11020,382,705 - 20,387,909 (+)NCBI
RefSeq Acc Id: XM_038488310   ⟹   XP_038344238
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11020,382,726 - 20,387,909 (+)NCBI
RefSeq Acc Id: XM_038488311   ⟹   XP_038344239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11020,382,724 - 20,387,909 (+)NCBI
RefSeq Acc Id: XM_038488312   ⟹   XP_038344240
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11020,382,815 - 20,387,909 (+)NCBI
RefSeq Acc Id: XM_038550211   ⟹   XP_038406139
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01020,877,308 - 20,882,513 (+)NCBI
RefSeq Acc Id: XM_038550212   ⟹   XP_038406140
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01020,877,329 - 20,882,513 (+)NCBI
RefSeq Acc Id: XM_038550213   ⟹   XP_038406141
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01020,877,327 - 20,882,513 (+)NCBI
RefSeq Acc Id: XM_038550214   ⟹   XP_038406142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01020,877,418 - 20,882,513 (+)NCBI
RefSeq Acc Id: XM_038614200   ⟹   XP_038470128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01020,695,486 - 20,700,691 (+)NCBI
RefSeq Acc Id: XM_038614201   ⟹   XP_038470129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01020,695,507 - 20,700,691 (+)NCBI
RefSeq Acc Id: XM_038614202   ⟹   XP_038470130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01020,695,505 - 20,700,691 (+)NCBI
RefSeq Acc Id: XM_038614203   ⟹   XP_038470131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01020,695,596 - 20,700,691 (+)NCBI
RefSeq Acc Id: XM_038636682   ⟹   XP_038492610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1019,851,125 - 19,856,330 (+)NCBI
RefSeq Acc Id: XM_038636689   ⟹   XP_038492617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1019,851,146 - 19,856,330 (+)NCBI
RefSeq Acc Id: XM_038636699   ⟹   XP_038492627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1019,851,144 - 19,856,330 (+)NCBI
RefSeq Acc Id: XM_038636709   ⟹   XP_038492637
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1019,851,235 - 19,856,330 (+)NCBI
RefSeq Acc Id: XM_038679544   ⟹   XP_038535472
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01020,662,399 - 20,667,604 (+)NCBI
RefSeq Acc Id: XM_038679545   ⟹   XP_038535473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01020,662,420 - 20,667,604 (+)NCBI
RefSeq Acc Id: XM_038679546   ⟹   XP_038535474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01020,662,418 - 20,667,604 (+)NCBI
RefSeq Acc Id: XM_038679547   ⟹   XP_038535475
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01020,662,509 - 20,667,604 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000001117   ⟸   ENSCAFT00000001221
RefSeq Acc Id: XP_038344237   ⟸   XM_038488309
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038344239   ⟸   XM_038488311
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038344238   ⟸   XM_038488310
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038344240   ⟸   XM_038488312
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038470128   ⟸   XM_038614200
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038470130   ⟸   XM_038614202
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038470129   ⟸   XM_038614201
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038470131   ⟸   XM_038614203
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038535472   ⟸   XM_038679544
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038535474   ⟸   XM_038679546
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535473   ⟸   XM_038679545
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535475   ⟸   XM_038679547
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038492610   ⟸   XM_038636682
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038492627   ⟸   XM_038636699
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038492617   ⟸   XM_038636689
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038492637   ⟸   XM_038636709
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406139   ⟸   XM_038550211
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038406141   ⟸   XM_038550213
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406140   ⟸   XM_038550212
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406142   ⟸   XM_038550214
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MIZ6 (UniProtKB/TrEMBL),   A0A8C0QXW2 (UniProtKB/TrEMBL)
Protein Domains
Cysteine-rich


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000787 Ensembl
  ENSCAFG00000051662 UniProtKB/TrEMBL
  ENSCAFG00030007802 UniProtKB/TrEMBL
  ENSCAFG00040008593 UniProtKB/TrEMBL
  ENSCAFG00845010320 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001221.5 UniProtKB/TrEMBL
  ENSCAFT00000103284.1 UniProtKB/TrEMBL
  ENSCAFT00000103522.1 UniProtKB/TrEMBL
  ENSCAFT00030014338.1 UniProtKB/TrEMBL
  ENSCAFT00040016040.1 UniProtKB/TrEMBL
  ENSCAFT00845018155.1 UniProtKB/TrEMBL
  ENSCAFT00845018187.1 UniProtKB/TrEMBL
  ENSCAFT00845018216.1 UniProtKB/TrEMBL
InterPro CDPF1 UniProtKB/TrEMBL
  Cys-rich_DPF UniProtKB/TrEMBL
NCBI Gene CDPF1 ENTREZGENE
PANTHER CYSTEINE-RICH DPF MOTIF DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR31849 UniProtKB/TrEMBL
Pfam C6_DPF UniProtKB/TrEMBL
PRINTS UPF0595 UniProtKB/TrEMBL
UniProt A0A8C0MIZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QXW2 ENTREZGENE
  A0A8I3NAD7_CANLF UniProtKB/TrEMBL
  A0A8I3NQW6_CANLF UniProtKB/TrEMBL
  A0A8I3RVQ8_CANLF UniProtKB/TrEMBL
  A0A8P0S6Z1_CANLF UniProtKB/TrEMBL
  A0A8P0TM09_CANLF UniProtKB/TrEMBL
  A0A8P0TTE8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39077 ENTREZGENE