ANKRD13B (ankyrin repeat domain 13B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ANKRD13B (ankyrin repeat domain 13B) Canis lupus familiaris
Analyze
Symbol: ANKRD13B
Name: ankyrin repeat domain 13B
RGD ID: 12408738
Description: ENCODES a protein that exhibits ubiquitin-dependent protein binding (inferred); INVOLVED IN negative regulation of receptor internalization (inferred); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ankyrin repeat domain-containing protein 13B; LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 13B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,696,334 - 43,713,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,696,398 - 43,714,912 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,849,401 - 42,867,986 (+)NCBI
ROS_Cfam_1.0944,512,483 - 44,530,865 (+)NCBI
UMICH_Zoey_3.1943,296,847 - 43,315,433 (+)NCBI
UNSW_CanFamBas_1.0943,587,526 - 43,604,739 (+)NCBI
UU_Cfam_GSD_1.0943,667,644 - 43,686,231 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ANKRD13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,696,334 - 43,713,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,696,398 - 43,714,912 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,849,401 - 42,867,986 (+)NCBI
ROS_Cfam_1.0944,512,483 - 44,530,865 (+)NCBI
UMICH_Zoey_3.1943,296,847 - 43,315,433 (+)NCBI
UNSW_CanFamBas_1.0943,587,526 - 43,604,739 (+)NCBI
UU_Cfam_GSD_1.0943,667,644 - 43,686,231 (+)NCBI
ANKRD13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1729,589,769 - 29,614,761 (+)EnsemblGRCh38hg38GRCh38
GRCh381729,589,769 - 29,615,006 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371727,920,150 - 27,941,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,944,653 - 24,965,905 (+)NCBINCBI36hg18NCBI36
Celera1724,781,393 - 24,802,648 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1724,129,928 - 24,151,179 (+)NCBIHuRef
CHM1_11727,983,046 - 28,004,250 (+)NCBICHM1_1
Ankrd13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,361,311 - 77,380,868 (-)NCBIGRCm39mm39
GRCm39 Ensembl1177,361,311 - 77,380,504 (-)Ensembl
GRCm381177,470,485 - 77,490,042 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,470,485 - 77,489,678 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,283,989 - 77,303,180 (-)NCBIGRCm37mm9NCBIm37
MGSCv361177,286,441 - 77,289,267 (-)NCBImm8
Celera1184,969,048 - 84,988,239 (-)NCBICelera
Cytogenetic Map11B5NCBI
Ankrd13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21062,319,660 - 62,338,342 (-)NCBI
Rnor_6.0 Ensembl1062,674,561 - 62,690,845 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01062,674,416 - 62,691,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01062,371,873 - 62,389,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41066,628,069 - 66,646,674 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1061,323,116 - 61,341,905 (-)NCBICelera
Cytogenetic Map10q24NCBI
Ankrd13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,644,332 - 3,661,895 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,644,332 - 3,662,375 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11727,676,809 - 27,684,179 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1727,676,809 - 27,684,253 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01727,159,796 - 27,181,528 (-)NCBIMhudiblu_PPA_v0panPan3
Ankrd13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,827,079 - 42,846,390 (+)NCBI
SpeTri2.0NW_0049365385,700,063 - 5,724,335 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,787,179 - 45,806,000 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,787,661 - 45,806,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,926,026 - 47,946,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,329,783 - 23,354,522 (+)NCBI
ChlSab1.1 Ensembl1623,333,688 - 23,353,340 (+)Ensembl
Ankrd13b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247862,091,030 - 2,108,736 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 11 7
Low 5 5 13 3 6 3 6 6 1 1 10 6
Below cutoff 3 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038486519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038611757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_548301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000030098   ⟹   ENSCAFP00000027973
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl943,696,398 - 43,714,912 (+)Ensembl
RefSeq Acc Id: XM_038486519   ⟹   XP_038342447
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1943,296,848 - 43,313,898 (+)NCBI
RefSeq Acc Id: XM_038486520   ⟹   XP_038342448
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1943,296,849 - 43,315,433 (+)NCBI
RefSeq Acc Id: XM_038486521   ⟹   XP_038342449
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1943,296,895 - 43,313,895 (+)NCBI
RefSeq Acc Id: XM_038486522   ⟹   XP_038342450
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1943,296,915 - 43,313,895 (+)NCBI
RefSeq Acc Id: XM_038486523   ⟹   XP_038342451
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1943,297,070 - 43,313,895 (+)NCBI
RefSeq Acc Id: XM_038486524   ⟹   XP_038342452
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1943,296,847 - 43,315,433 (+)NCBI
RefSeq Acc Id: XM_038548364   ⟹   XP_038404292
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0943,667,645 - 43,684,696 (+)NCBI
RefSeq Acc Id: XM_038548365   ⟹   XP_038404293
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0943,667,646 - 43,686,231 (+)NCBI
RefSeq Acc Id: XM_038548366   ⟹   XP_038404294
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0943,667,692 - 43,684,693 (+)NCBI
RefSeq Acc Id: XM_038548367   ⟹   XP_038404295
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0943,667,712 - 43,684,693 (+)NCBI
RefSeq Acc Id: XM_038548368   ⟹   XP_038404296
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0943,667,867 - 43,684,693 (+)NCBI
RefSeq Acc Id: XM_038548369   ⟹   XP_038404297
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0943,667,644 - 43,686,231 (+)NCBI
RefSeq Acc Id: XM_038611721   ⟹   XP_038467649
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha942,849,402 - 42,866,451 (+)NCBI
RefSeq Acc Id: XM_038611726   ⟹   XP_038467654
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha942,849,449 - 42,866,448 (+)NCBI
RefSeq Acc Id: XM_038611735   ⟹   XP_038467663
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha942,849,469 - 42,866,448 (+)NCBI
RefSeq Acc Id: XM_038611746   ⟹   XP_038467674
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha942,849,624 - 42,866,448 (+)NCBI
RefSeq Acc Id: XM_038611757   ⟹   XP_038467685
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha942,849,401 - 42,867,986 (+)NCBI
RefSeq Acc Id: XM_038612313   ⟹   XP_038468241
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0943,587,526 - 43,604,739 (+)NCBI
RefSeq Acc Id: XM_038677583   ⟹   XP_038533511
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0944,512,484 - 44,529,330 (+)NCBI
RefSeq Acc Id: XM_038677584   ⟹   XP_038533512
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0944,512,485 - 44,530,865 (+)NCBI
RefSeq Acc Id: XM_038677585   ⟹   XP_038533513
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0944,512,531 - 44,529,328 (+)NCBI
RefSeq Acc Id: XM_038677586   ⟹   XP_038533514
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0944,512,551 - 44,529,328 (+)NCBI
RefSeq Acc Id: XM_038677587   ⟹   XP_038533515
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0944,512,706 - 44,529,328 (+)NCBI
RefSeq Acc Id: XM_038677588   ⟹   XP_038533516
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0944,512,483 - 44,530,865 (+)NCBI
RefSeq Acc Id: XM_548301   ⟹   XP_548301
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1943,696,334 - 43,713,888 (+)NCBI
Dog10K_Boxer_Tasha942,849,403 - 42,867,986 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_548301   ⟸   XM_548301
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCAFP00000027973   ⟸   ENSCAFT00000030098
RefSeq Acc Id: XP_038342452   ⟸   XM_038486524
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038342447   ⟸   XM_038486519
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038342448   ⟸   XM_038486520
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038342449   ⟸   XM_038486521
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038342450   ⟸   XM_038486522
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038342451   ⟸   XM_038486523
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038468241   ⟸   XM_038612313
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038533516   ⟸   XM_038677588
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038533511   ⟸   XM_038677583
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038533512   ⟸   XM_038677584
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038533513   ⟸   XM_038677585
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038533514   ⟸   XM_038677586
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038533515   ⟸   XM_038677587
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038467685   ⟸   XM_038611757
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038467649   ⟸   XM_038611721
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038467654   ⟸   XM_038611726
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038467663   ⟸   XM_038611735
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038467674   ⟸   XM_038611746
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038404297   ⟸   XM_038548369
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038404292   ⟸   XM_038548364
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038404293   ⟸   XM_038548365
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038404294   ⟸   XM_038548366
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038404295   ⟸   XM_038548367
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038404296   ⟸   XM_038548368
- Peptide Label: isoform X2

Promoters
RGD ID:13684690
Promoter ID:EPDNEW_C2758
Type:multiple initiation site
Name:ANKRD13B_1
Description:ankyrin repeat domain 13B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1943,696,205 - 43,696,265EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018950 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000027973 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030098 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene ANKRD13B ENTREZGENE
PANTHER PTHR12447 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  GPCR_chapero_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt E2R108_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:37885 ENTREZGENE