PIGV (phosphatidylinositol glycan anchor biosynthesis class V) - Rat Genome Database

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Gene: PIGV (phosphatidylinositol glycan anchor biosynthesis class V) Canis lupus familiaris
Analyze
Symbol: PIGV
Name: phosphatidylinositol glycan anchor biosynthesis class V
RGD ID: 12407110
Description: ENCODES a protein that exhibits alpha-1,6-mannosyltransferase activity (inferred); glycolipid mannosyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN GPI anchor biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 1 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); mannosyltransferase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GPI mannosyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,315,589 - 73,326,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,315,568 - 73,324,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,892,989 - 69,903,513 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,878,780 - 73,889,304 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,878,792 - 73,888,062 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1270,703,670 - 70,714,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,709,231 - 71,719,738 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,712,637 - 72,723,158 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PIGV
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,315,589 - 73,326,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,315,568 - 73,324,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,892,989 - 69,903,513 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,878,780 - 73,889,304 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,878,792 - 73,888,062 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1270,703,670 - 70,714,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,709,231 - 71,719,738 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,712,637 - 72,723,158 (-)NCBIUU_Cfam_GSD_1.0
PIGV
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,787,054 - 26,800,659 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,787,054 - 26,800,659 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,113,545 - 27,127,150 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,987,073 - 26,997,474 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,798,627 - 26,809,028NCBI
Celera125,511,490 - 25,521,891 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef125,367,661 - 25,377,950 (+)NCBIHuRef
CHM1_1127,227,705 - 27,238,150 (+)NCBICHM1_1
T2T-CHM13v2.0126,625,009 - 26,638,614 (+)NCBIT2T-CHM13v2.0
Pigv
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,387,071 - 133,401,498 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,387,698 - 133,399,958 (-)EnsemblGRCm39 Ensembl
GRCm384133,659,359 - 133,673,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,660,387 - 133,672,647 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,217,340 - 133,228,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,932,463 - 132,944,696 (-)NCBIMGSCv36mm8
Celera4131,837,214 - 131,848,418 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.25NCBI
Pigv
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,173,486 - 151,185,748 (-)NCBIGRCr8
mRatBN7.25145,889,642 - 145,901,533 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,889,646 - 145,901,533 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5148,592,104 - 148,603,965 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,361,709 - 150,373,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,348,264 - 150,360,125 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,886,132 - 151,899,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,886,035 - 151,898,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05155,574,856 - 155,587,320 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,404,858 - 151,416,748 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15151,414,896 - 151,426,783 (+)NCBI
Celera5144,310,621 - 144,322,511 (-)NCBICelera
Cytogenetic Map5q36NCBI
Pigv
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,128,262 - 6,139,204 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,128,262 - 6,139,204 (+)NCBIChiLan1.0ChiLan1.0
PIGV
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,069,629 - 200,081,624 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,168,830 - 199,185,921 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,051,863 - 26,065,415 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,108,230 - 27,119,055 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,109,102 - 27,119,055 (+)Ensemblpanpan1.1panPan2
Pigv
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,378,926 - 45,390,936 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,205,368 - 11,216,528 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,204,595 - 11,215,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGV
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,129,586 - 84,139,249 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,129,911 - 84,139,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2677,700,306 - 77,709,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGV
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,964,491 - 105,977,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,962,105 - 105,972,231 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603310,452,873 - 10,466,103 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigv
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,767,552 - 10,780,738 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,765,842 - 10,813,938 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PIGV
83 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 21 6 6 6 6 7 10 6
Low 4 5 1 6 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014110288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000049117   ⟹   ENSCAFP00000039309
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,315,568 - 73,324,831 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020473   ⟹   ENSCAFP00845016053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,878,792 - 73,888,062 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020481   ⟹   ENSCAFP00845016057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl273,878,875 - 73,887,704 (-)Ensembl
RefSeq Acc Id: XM_014110288   ⟹   XP_013965763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,315,589 - 73,324,777 (-)NCBI
Dog10K_Boxer_Tasha269,892,989 - 69,902,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014110291   ⟹   XP_013965766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,315,589 - 73,325,443 (-)NCBI
Dog10K_Boxer_Tasha269,892,989 - 69,902,310 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014110292   ⟹   XP_013965767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,315,589 - 73,324,777 (-)NCBI
Dog10K_Boxer_Tasha269,892,989 - 69,902,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014110295   ⟹   XP_013965770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,315,589 - 73,324,776 (-)NCBI
Dog10K_Boxer_Tasha269,892,989 - 69,902,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014110298   ⟹   XP_013965773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,315,589 - 73,324,774 (-)NCBI
Dog10K_Boxer_Tasha269,892,989 - 69,902,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412777   ⟹   XP_022268485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,315,589 - 73,326,116 (-)NCBI
Dog10K_Boxer_Tasha269,892,989 - 69,903,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038462487   ⟹   XP_038318415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha269,892,989 - 69,902,856 (-)NCBI
RefSeq Acc Id: XM_038462488   ⟹   XP_038318416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha269,892,989 - 69,902,794 (-)NCBI
RefSeq Acc Id: XM_038462490   ⟹   XP_038318418
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha269,892,989 - 69,902,794 (-)NCBI
RefSeq Acc Id: XM_038462497   ⟹   XP_038318425
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha269,892,989 - 69,902,161 (-)NCBI
RefSeq Acc Id: XM_038470586   ⟹   XP_038326514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,712,846 (-)NCBI
RefSeq Acc Id: XM_038470587   ⟹   XP_038326515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,712,991 (-)NCBI
RefSeq Acc Id: XM_038470588   ⟹   XP_038326516
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,712,846 (-)NCBI
RefSeq Acc Id: XM_038470589   ⟹   XP_038326517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,713,537 (-)NCBI
RefSeq Acc Id: XM_038470590   ⟹   XP_038326518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,712,843 (-)NCBI
RefSeq Acc Id: XM_038470591   ⟹   XP_038326519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,713,475 (-)NCBI
RefSeq Acc Id: XM_038470592   ⟹   XP_038326520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,713,475 (-)NCBI
RefSeq Acc Id: XM_038470593   ⟹   XP_038326521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,714,191 (-)NCBI
RefSeq Acc Id: XM_038470594   ⟹   XP_038326522
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,712,844 (-)NCBI
RefSeq Acc Id: XM_038470595   ⟹   XP_038326523
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,703,670 - 70,712,842 (-)NCBI
RefSeq Acc Id: XM_038531429   ⟹   XP_038387357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,721,809 (-)NCBI
RefSeq Acc Id: XM_038531430   ⟹   XP_038387358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,721,954 (-)NCBI
RefSeq Acc Id: XM_038531431   ⟹   XP_038387359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,721,809 (-)NCBI
RefSeq Acc Id: XM_038531432   ⟹   XP_038387360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,722,500 (-)NCBI
RefSeq Acc Id: XM_038531433   ⟹   XP_038387361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,721,806 (-)NCBI
RefSeq Acc Id: XM_038531434   ⟹   XP_038387362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,722,438 (-)NCBI
RefSeq Acc Id: XM_038531435   ⟹   XP_038387363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,722,438 (-)NCBI
RefSeq Acc Id: XM_038531436   ⟹   XP_038387364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,723,158 (-)NCBI
RefSeq Acc Id: XM_038531437   ⟹   XP_038387365
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,721,807 (-)NCBI
RefSeq Acc Id: XM_038531438   ⟹   XP_038387366
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,712,637 - 72,721,805 (-)NCBI
RefSeq Acc Id: XM_038595651   ⟹   XP_038451579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,718,398 (-)NCBI
RefSeq Acc Id: XM_038595652   ⟹   XP_038451580
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,718,547 (-)NCBI
RefSeq Acc Id: XM_038595653   ⟹   XP_038451581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,718,398 (-)NCBI
RefSeq Acc Id: XM_038595654   ⟹   XP_038451582
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,719,093 (-)NCBI
RefSeq Acc Id: XM_038595655   ⟹   XP_038451583
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,718,392 (-)NCBI
RefSeq Acc Id: XM_038595656   ⟹   XP_038451584
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,719,031 (-)NCBI
RefSeq Acc Id: XM_038595657   ⟹   XP_038451585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,719,031 (-)NCBI
RefSeq Acc Id: XM_038595658   ⟹   XP_038451586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,719,738 (-)NCBI
RefSeq Acc Id: XM_038595659   ⟹   XP_038451587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,718,395 (-)NCBI
RefSeq Acc Id: XM_038595661   ⟹   XP_038451589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,709,231 - 71,718,394 (-)NCBI
RefSeq Acc Id: XM_038659731   ⟹   XP_038515659
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,887,956 (-)NCBI
RefSeq Acc Id: XM_038659732   ⟹   XP_038515660
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,888,101 (-)NCBI
RefSeq Acc Id: XM_038659733   ⟹   XP_038515661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,887,956 (-)NCBI
RefSeq Acc Id: XM_038659734   ⟹   XP_038515662
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,888,647 (-)NCBI
RefSeq Acc Id: XM_038659735   ⟹   XP_038515663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,887,953 (-)NCBI
RefSeq Acc Id: XM_038659736   ⟹   XP_038515664
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,888,585 (-)NCBI
RefSeq Acc Id: XM_038659737   ⟹   XP_038515665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,888,585 (-)NCBI
RefSeq Acc Id: XM_038659738   ⟹   XP_038515666
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,889,304 (-)NCBI
RefSeq Acc Id: XM_038659739   ⟹   XP_038515667
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,887,954 (-)NCBI
RefSeq Acc Id: XM_038659740   ⟹   XP_038515668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,878,780 - 73,887,952 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013965763 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965766 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965767 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965770 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965773 (Get FASTA)   NCBI Sequence Viewer  
  XP_022268485 (Get FASTA)   NCBI Sequence Viewer  
  XP_038318415 (Get FASTA)   NCBI Sequence Viewer  
  XP_038318416 (Get FASTA)   NCBI Sequence Viewer  
  XP_038318418 (Get FASTA)   NCBI Sequence Viewer  
  XP_038318425 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326516 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326517 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326518 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326519 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326520 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326521 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326522 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326523 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387357 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387358 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387359 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387360 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387361 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387362 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387363 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387364 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387365 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387366 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451580 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451581 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451582 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451583 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515659 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515660 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515661 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515662 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515663 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515664 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515665 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515666 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515667 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515668 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000039309.2
  ENSCAFP00000073292.1
  ENSCAFP00030021197.1
  ENSCAFP00040005985.1
  ENSCAFP00845016053.1
  ENSCAFP00845016057
  ENSCAFP00845016057.1
Reference Protein Sequences
RefSeq Acc Id: XP_013965766   ⟸   XM_014110291
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013965770   ⟸   XM_014110295
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013965767   ⟸   XM_014110292
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013965763   ⟸   XM_014110288
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013965773   ⟸   XM_014110298
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LBX0 (UniProtKB/TrEMBL),   A0A8C0N3Z9 (UniProtKB/TrEMBL),   A0A8I3NIX2 (UniProtKB/TrEMBL),   A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268485   ⟸   XM_022412777
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000039309   ⟸   ENSCAFT00000049117
RefSeq Acc Id: XP_038326521   ⟸   XM_038470593
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326517   ⟸   XM_038470589
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326519   ⟸   XM_038470591
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326520   ⟸   XM_038470592
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326515   ⟸   XM_038470587
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326516   ⟸   XM_038470588
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326514   ⟸   XM_038470586
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326522   ⟸   XM_038470594
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038326518   ⟸   XM_038470590
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038326523   ⟸   XM_038470595
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038451586   ⟸   XM_038595658
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451582   ⟸   XM_038595654
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451584   ⟸   XM_038595656
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451585   ⟸   XM_038595657
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451580   ⟸   XM_038595652
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451581   ⟸   XM_038595653
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451579   ⟸   XM_038595651
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451587   ⟸   XM_038595659
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038451589   ⟸   XM_038595661
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038451583   ⟸   XM_038595655
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038515666   ⟸   XM_038659738
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515662   ⟸   XM_038659734
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515664   ⟸   XM_038659736
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515665   ⟸   XM_038659737
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515660   ⟸   XM_038659732
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515661   ⟸   XM_038659733
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515659   ⟸   XM_038659731
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515667   ⟸   XM_038659739
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LBX0 (UniProtKB/TrEMBL),   A0A8C0N3Z9 (UniProtKB/TrEMBL),   A0A8I3NIX2 (UniProtKB/TrEMBL),   A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515663   ⟸   XM_038659735
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515668   ⟸   XM_038659740
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038318415   ⟸   XM_038462487
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318416   ⟸   XM_038462488
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318418   ⟸   XM_038462490
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318425   ⟸   XM_038462497
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038387364   ⟸   XM_038531436
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387360   ⟸   XM_038531432
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387362   ⟸   XM_038531434
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387363   ⟸   XM_038531435
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387358   ⟸   XM_038531430
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387359   ⟸   XM_038531431
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387357   ⟸   XM_038531429
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387365   ⟸   XM_038531437
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LBX0 (UniProtKB/TrEMBL),   A0A8C0N3Z9 (UniProtKB/TrEMBL),   A0A8I3NIX2 (UniProtKB/TrEMBL),   A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387361   ⟸   XM_038531433
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NJ46 (UniProtKB/TrEMBL),   A0A8P0NQS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387366   ⟸   XM_038531438
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCAFP00845016053   ⟸   ENSCAFT00845020473
RefSeq Acc Id: ENSCAFP00845016057   ⟸   ENSCAFT00845020481

Promoters
RGD ID:13682589
Promoter ID:EPDNEW_C655
Type:multiple initiation site
Name:PIGV_1
Description:phosphatidylinositol glycan anchor biosynthesis class V
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,323,858 - 73,323,918EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012300 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013142 UniProtKB/TrEMBL
  ENSCAFG00040003616 UniProtKB/TrEMBL
  ENSCAFG00845011546 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049117.3 UniProtKB/TrEMBL
  ENSCAFT00000109550.1 UniProtKB/TrEMBL
  ENSCAFT00030024298.1 UniProtKB/TrEMBL
  ENSCAFT00040006898.1 UniProtKB/TrEMBL
  ENSCAFT00845020473.1 UniProtKB/TrEMBL
  ENSCAFT00845020481 ENTREZGENE
  ENSCAFT00845020481.1 UniProtKB/TrEMBL
InterPro PIG-V/Gpi18 UniProtKB/TrEMBL
NCBI Gene PIGV ENTREZGENE
PANTHER GPI MANNOSYLTRANSFERASE 2 UniProtKB/TrEMBL
  PTHR12468 UniProtKB/TrEMBL
Pfam Mannosyl_trans2 UniProtKB/TrEMBL
UniProt A0A8C0LBX0 ENTREZGENE
  A0A8C0N3Z9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NIX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NJ46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NQS3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44544 ENTREZGENE