TBCEL (tubulin folding cofactor E like) - Rat Genome Database

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Gene: TBCEL (tubulin folding cofactor E like) Canis lupus familiaris
Analyze
Symbol: TBCEL
Name: tubulin folding cofactor E like
RGD ID: 12406847
Description: ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog)
Type: protein-coding
Previously known as: leucine rich repeat containing 35; LRRC35; tubulin-specific chaperone cofactor E-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1512,963,356 - 13,035,525 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl512,964,523 - 13,035,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:10967132  


Genomics

Comparative Map Data
TBCEL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1512,963,356 - 13,035,525 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl512,964,523 - 13,035,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
TBCEL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811121,024,102 - 121,090,776 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11121,024,072 - 121,090,776 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,894,811 - 120,961,485 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611120,400,040 - 120,463,333 (+)NCBINCBI36Build 36hg18NCBI36
Celera11118,054,255 - 118,119,808 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,834,886 - 116,900,437 (+)NCBIHuRef
CHM1_111120,782,217 - 120,847,771 (+)NCBICHM1_1
T2T-CHM13v2.011121,047,848 - 121,114,522 (+)NCBIT2T-CHM13v2.0
Tbcel
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,323,612 - 42,383,534 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,323,612 - 42,419,105 (-)EnsemblGRCm39 Ensembl
GRCm38942,412,316 - 42,472,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,412,316 - 42,507,809 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,220,400 - 42,280,309 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,163,312 - 42,223,221 (-)NCBIMGSCv36mm8
Celera939,660,436 - 39,721,240 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.71NCBI
Tbcel
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8851,692,660 - 51,751,560 (-)NCBIGRCr8
mRatBN7.2842,795,648 - 42,854,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl842,796,730 - 42,854,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,293,276 - 48,348,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0846,571,951 - 46,627,619 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,439,545 - 44,495,219 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0846,691,488 - 46,750,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl846,694,561 - 46,750,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,165,667 - 45,224,997 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,403,536 - 45,459,207 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,412,302 - 45,467,973 (-)NCBI
Celera842,392,239 - 42,447,663 (-)NCBICelera
Cytogenetic Map8q22NCBI
Tbcel
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541221,968,964 - 22,045,813 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541221,969,521 - 22,044,348 (+)NCBIChiLan1.0ChiLan1.0
Tbcel
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248804,136,804 - 4,213,713 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248804,135,653 - 4,213,968 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TBCEL
828 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 9 8 8 7
Low 5 5 13 6 6 6 6 6 4 3 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000018832   ⟹   ENSCAFP00000017451
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl512,964,523 - 13,035,613 (-)Ensembl
RefSeq Acc Id: XM_005619660   ⟹   XP_005619717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,963,356 - 13,035,110 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005619661   ⟹   XP_005619718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,963,356 - 13,020,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014113359   ⟹   XP_013968834
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,963,356 - 13,035,110 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022418188   ⟹   XP_022273896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,963,356 - 13,024,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022418189   ⟹   XP_022273897
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,963,356 - 13,024,208 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022418190   ⟹   XP_022273898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,967,219 - 13,024,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_546476   ⟹   XP_546476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1512,963,356 - 13,035,525 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011858 Ensembl
NCBI Gene TBCEL ENTREZGENE
VGNC ID VGNC:47158 ENTREZGENE