RNF207 (ring finger protein 207) - Rat Genome Database

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Gene: RNF207 (ring finger protein 207) Canis lupus familiaris
Analyze
Symbol: RNF207
Name: ring finger protein 207
RGD ID: 12406483
Description: ENCODES a protein that exhibits Hsp70 protein binding (inferred); metal ion binding (inferred); protein-folding chaperone binding (inferred); INVOLVED IN positive regulation of membrane repolarization during ventricular cardiac muscle cell action potential (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); long QT syndrome (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,105,200 - 60,119,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,106,297 - 60,118,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,114,909 - 60,129,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,320,633 - 60,335,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,321,442 - 60,335,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,320,217 - 60,335,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,187,028 - 60,202,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,588,433 - 60,603,475 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNF207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,105,200 - 60,119,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,106,297 - 60,118,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,114,909 - 60,129,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,320,633 - 60,335,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,321,442 - 60,335,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,320,217 - 60,335,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,187,028 - 60,202,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,588,433 - 60,603,475 (+)NCBIUU_Cfam_GSD_1.0
RNF207
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,206,119 - 6,221,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,205,475 - 6,221,299 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,266,179 - 6,281,359 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,188,776 - 6,203,946 (+)NCBINCBI36Build 36hg18NCBI36
Celera15,380,701 - 5,395,870 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,414,459 - 5,429,630 (+)NCBIHuRef
CHM1_116,254,831 - 6,270,001 (+)NCBICHM1_1
T2T-CHM13v2.015,731,763 - 5,746,943 (+)NCBIT2T-CHM13v2.0
Rnf207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,391,475 - 152,403,686 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,391,476 - 152,403,450 (-)EnsemblGRCm39 Ensembl
GRCm384152,307,018 - 152,319,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,307,019 - 152,318,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv374151,681,132 - 151,692,734 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364151,150,823 - 151,162,408 (-)NCBIMGSCv36mm8
Celera4154,594,355 - 154,605,972 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.02NCBI
Rnf207
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,098,074 - 168,112,585 (-)NCBIGRCr8
mRatBN7.25162,815,351 - 162,828,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,815,357 - 162,828,375 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05169,486,253 - 169,500,451 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,486,257 - 169,499,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05173,039,837 - 173,054,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,537,947 - 169,550,915 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5161,046,593 - 161,066,093 (-)NCBICelera
Cytogenetic Map5q36NCBI
RNF207
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,003,165 - 222,017,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,645,979 - 220,658,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014,972,787 - 4,986,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,228,829 - 6,242,778 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,229,241 - 6,242,770 (+)Ensemblpanpan1.1panPan2
Rnf207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,580,768 - 30,596,429 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,066,957 - 1,079,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,065,260 - 1,079,918 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF207
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,106,552 - 67,116,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,105,347 - 67,119,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,013,475 - 62,024,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF207
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,518,231 - 125,530,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605429,624,482 - 29,638,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf207
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,178,299 - 5,183,610 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248185,176,316 - 5,183,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF207
106 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014113884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038537784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038601941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038666528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002626858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000037199   ⟹   ENSCAFP00000032663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl560,106,297 - 60,118,670 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000069203   ⟹   ENSCAFP00000050030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl560,106,297 - 60,118,504 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845041387   ⟹   ENSCAFP00845032452
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl560,321,442 - 60,335,238 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845041486   ⟹   ENSCAFP00845032526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl560,321,447 - 60,335,653 (+)Ensembl
RefSeq Acc Id: XM_014113884   ⟹   XP_013969359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1560,105,200 - 60,119,902 (+)NCBI
Dog10K_Boxer_Tasha560,114,909 - 60,129,921 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022418981   ⟹   XP_022274689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1560,105,252 - 60,118,492 (+)NCBI
Dog10K_Boxer_Tasha560,114,951 - 60,128,252 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038476642   ⟹   XP_038332570
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1560,320,259 - 60,333,536 (+)NCBI
RefSeq Acc Id: XM_038476643   ⟹   XP_038332571
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1560,320,217 - 60,335,203 (+)NCBI
RefSeq Acc Id: XM_038476644   ⟹   XP_038332572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1560,320,217 - 60,333,536 (+)NCBI
RefSeq Acc Id: XM_038523156   ⟹   XP_038379084
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha560,114,909 - 60,128,252 (+)NCBI
RefSeq Acc Id: XM_038537782   ⟹   XP_038393710
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0560,588,475 - 60,601,790 (+)NCBI
RefSeq Acc Id: XM_038537783   ⟹   XP_038393711
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0560,588,433 - 60,603,475 (+)NCBI
RefSeq Acc Id: XM_038537784   ⟹   XP_038393712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0560,588,433 - 60,601,790 (+)NCBI
RefSeq Acc Id: XM_038601939   ⟹   XP_038457867
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0560,187,070 - 60,200,343 (+)NCBI
RefSeq Acc Id: XM_038601940   ⟹   XP_038457868
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0560,187,028 - 60,202,012 (+)NCBI
RefSeq Acc Id: XM_038601941   ⟹   XP_038457869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0560,187,028 - 60,200,343 (+)NCBI
RefSeq Acc Id: XM_038666526   ⟹   XP_038522454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0560,320,675 - 60,333,992 (+)NCBI
RefSeq Acc Id: XM_038666527   ⟹   XP_038522455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0560,320,633 - 60,335,661 (+)NCBI
RefSeq Acc Id: XM_038666528   ⟹   XP_038522456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0560,320,633 - 60,333,992 (+)NCBI
RefSeq Acc Id: XP_013969359   ⟸   XM_014113884
- Peptide Label: isoform X2
- UniProtKB: A0A8C0S4E3 (UniProtKB/TrEMBL),   A0A8P0NZY2 (UniProtKB/TrEMBL),   A0A8C0K457 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022274689   ⟸   XM_022418981
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SQ35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000050030   ⟸   ENSCAFT00000069203
Ensembl Acc Id: ENSCAFP00000032663   ⟸   ENSCAFT00000037199
RefSeq Acc Id: XP_038332571   ⟸   XM_038476643
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038332572   ⟸   XM_038476644
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038332570   ⟸   XM_038476642
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038457868   ⟸   XM_038601940
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038457869   ⟸   XM_038601941
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038457867   ⟸   XM_038601939
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038522455   ⟸   XM_038666527
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PJ15 (UniProtKB/TrEMBL),   A0A8C0K457 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038522456   ⟸   XM_038666528
- Peptide Label: isoform X3
- UniProtKB: A0A8I3PIL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038522454   ⟸   XM_038666526
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PIL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038379084   ⟸   XM_038523156
- Peptide Label: isoform X3
- UniProtKB: A0A8P0SQ35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038393711   ⟸   XM_038537783
- Peptide Label: isoform X2
- UniProtKB: A0A8C0K457 (UniProtKB/TrEMBL),   A0A8C0MD97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038393712   ⟸   XM_038537784
- Peptide Label: isoform X3
- UniProtKB: A0A8P0SQ35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038393710   ⟸   XM_038537782
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SQ35 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845032452   ⟸   ENSCAFT00845041387
Ensembl Acc Id: ENSCAFP00845032526   ⟸   ENSCAFT00845041486
Protein Domains
B box-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019567 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006253 UniProtKB/TrEMBL
  ENSCAFG00040009837 UniProtKB/TrEMBL
  ENSCAFG00845023445 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000037199.4 UniProtKB/TrEMBL
  ENSCAFT00000069203.2 UniProtKB/TrEMBL
  ENSCAFT00030011478.1 UniProtKB/TrEMBL
  ENSCAFT00040018227.1 UniProtKB/TrEMBL
  ENSCAFT00845041387 ENTREZGENE
  ENSCAFT00845041387.1 UniProtKB/TrEMBL
  ENSCAFT00845041486.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Actin interacting protein 3, C-terminal domain UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro PML-like_CC UniProtKB/TrEMBL
  RNF207 UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report cfa:479588 UniProtKB/TrEMBL
NCBI Gene RNF207 ENTREZGENE
PANTHER PTHR22635 UniProtKB/TrEMBL
  RING FINGER PROTEIN 207 UniProtKB/TrEMBL
Pfam PML_CC UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PROSITE ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8C0K457 ENTREZGENE
  A0A8C0MD97 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S4E3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PIL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJ15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NZY2 ENTREZGENE
  A0A8P0SQ35 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0NZY2 UniProtKB/TrEMBL
VGNC ID VGNC:45654 ENTREZGENE