VEGFD (vascular endothelial growth factor D) - Rat Genome Database

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Gene: VEGFD (vascular endothelial growth factor D) Canis lupus familiaris
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Symbol: VEGFD
Name: vascular endothelial growth factor D
RGD ID: 12406166
Description: ENCODES a protein that exhibits vascular endothelial growth factor receptor 2 binding (ortholog); vascular endothelial growth factor receptor binding (ortholog); INVOLVED IN cell population proliferation (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of interleukin-6 production (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); lymphangioleiomyomatosis (ortholog); Lymphatic Metastasis (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,590,097 - 11,627,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX11,590,089 - 11,626,486 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,497,333 - 11,534,670 (-)NCBI
ROS_Cfam_1.0X11,552,176 - 11,589,521 (-)NCBI
UMICH_Zoey_3.1X11,615,093 - 11,652,427 (-)NCBI
UNSW_CanFamBas_1.0X11,606,440 - 11,643,765 (-)NCBI
UU_Cfam_GSD_1.0X11,634,519 - 11,671,865 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
VEGFD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,590,097 - 11,627,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX11,590,089 - 11,626,486 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,497,333 - 11,534,670 (-)NCBI
ROS_Cfam_1.0X11,552,176 - 11,589,521 (-)NCBI
UMICH_Zoey_3.1X11,615,093 - 11,652,427 (-)NCBI
UNSW_CanFamBas_1.0X11,606,440 - 11,643,765 (-)NCBI
UU_Cfam_GSD_1.0X11,634,519 - 11,671,865 (-)NCBI
VEGFD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX15,345,596 - 15,384,413 (-)EnsemblGRCh38hg38GRCh38
GRCh38X15,345,596 - 15,384,413 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X15,363,718 - 15,402,535 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,273,639 - 15,312,498 (-)NCBINCBI36hg18NCBI36
Build 34X15,123,375 - 15,162,234NCBI
CeleraX19,479,224 - 19,518,092 (-)NCBI
Cytogenetic MapXp22.2NCBI
HuRefX13,122,815 - 13,159,253 (-)NCBIHuRef
CHM1_1X15,394,667 - 15,433,457 (-)NCBICHM1_1
Vegfd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,156,269 - 163,185,646 (+)NCBIGRCm39mm39
GRCm39 EnsemblX163,156,374 - 163,185,646 (+)Ensembl
GRCm38X164,373,522 - 164,402,650 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,373,378 - 164,402,650 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,811,480 - 160,840,579 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X159,717,653 - 159,746,752 (+)NCBImm8
CeleraX147,588,947 - 147,618,041 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.35NCBI
Vegfd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X30,073,122 - 30,108,413 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX30,074,163 - 30,108,295 (-)Ensembl
Rnor_6.0X31,816,480 - 31,852,239 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX31,816,436 - 31,851,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,190,233 - 32,225,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X50,830,612 - 50,864,445 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X50,884,080 - 50,917,914 (-)NCBI
CeleraX30,420,833 - 30,454,666 (-)NCBICelera
Cytogenetic MapXq14NCBI
Vegfd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,813,438 - 2,845,915 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,813,475 - 2,845,856 (+)NCBIChiLan1.0ChiLan1.0
VEGFD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X15,254,945 - 15,293,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,254,945 - 15,293,704 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X7,972,227 - 8,011,263 (-)NCBIMhudiblu_PPA_v0panPan3
Vegfd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X4,761,827 - 4,794,675 (-)NCBI
SpeTri2.0NW_0049364704,761,827 - 4,794,751 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VEGFD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,893,259 - 11,933,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X11,893,254 - 11,933,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X12,853,823 - 12,894,483 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VEGFD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X13,813,472 - 13,854,253 (-)NCBI
ChlSab1.1 EnsemblX13,813,403 - 13,854,057 (-)Ensembl
Vero_WHO_p1.0NW_02366605615,650,140 - 15,689,998 (-)NCBI
Vegfd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624829148,371 - 181,742 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 5
Low 4 5 6 4 1 5 6 6
Below cutoff 16 6 2 6 5 1 6 8 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000018967   ⟹   ENSCAFP00000017577
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX11,590,089 - 11,626,486 (-)Ensembl
RefSeq Acc Id: XM_038449456   ⟹   XP_038305384
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X11,552,176 - 11,589,521 (-)NCBI
RefSeq Acc Id: XM_038449457   ⟹   XP_038305385
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X11,552,176 - 11,588,586 (-)NCBI
RefSeq Acc Id: XM_038464644   ⟹   XP_038320572
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX11,497,333 - 11,533,730 (-)NCBI
RefSeq Acc Id: XM_038522880   ⟹   XP_038378808
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X11,615,093 - 11,652,427 (-)NCBI
RefSeq Acc Id: XM_038522881   ⟹   XP_038378809
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X11,615,093 - 11,651,487 (-)NCBI
RefSeq Acc Id: XM_038586870   ⟹   XP_038442798
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X11,634,519 - 11,671,865 (-)NCBI
RefSeq Acc Id: XM_038586871   ⟹   XP_038442799
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X11,634,519 - 11,670,930 (-)NCBI
RefSeq Acc Id: XM_038651385   ⟹   XP_038507313
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X11,606,440 - 11,643,765 (-)NCBI
RefSeq Acc Id: XM_038651386   ⟹   XP_038507314
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X11,606,440 - 11,642,825 (-)NCBI
RefSeq Acc Id: XM_548869   ⟹   XP_548869
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X11,590,097 - 11,627,199 (-)NCBI
Dog10K_Boxer_TashaX11,497,333 - 11,534,670 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_548869   ⟸   XM_548869
- Peptide Label: isoform X1
- UniProtKB: F1PEV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000017577   ⟸   ENSCAFT00000018967
RefSeq Acc Id: XP_038378808   ⟸   XM_038522880
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378809   ⟸   XM_038522881
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507313   ⟸   XM_038651385
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507314   ⟸   XM_038651386
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038305384   ⟸   XM_038449456
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038305385   ⟸   XM_038449457
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038320572   ⟸   XM_038464644
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038442798   ⟸   XM_038586870
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038442799   ⟸   XM_038586871
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011945 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000017577 ENTREZGENE
NCBI Gene VEGFD ENTREZGENE
UniProt F1PEV4 ENTREZGENE
VGNC ID VGNC:48253 ENTREZGENE