SNX30 (sorting nexin family member 30) - Rat Genome Database
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Gene: SNX30 (sorting nexin family member 30) Canis lupus familiaris
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Symbol: SNX30
Name: sorting nexin family member 30
RGD ID: 12403021
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); INVOLVED IN protein transport (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sorting nexin-30
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,233,469 - 67,294,159 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,233,256 - 67,289,224 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,593,004 - 65,700,845 (+)NCBI
ROS_Cfam_1.01168,312,076 - 68,420,280 (+)NCBI
UMICH_Zoey_3.11166,828,471 - 66,936,337 (+)NCBI
UNSW_CanFamBas_1.01166,851,734 - 66,959,739 (+)NCBI
UU_Cfam_GSD_1.01167,596,127 - 67,704,210 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
SNX30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,233,469 - 67,294,159 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,233,256 - 67,289,224 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,593,004 - 65,700,845 (+)NCBI
ROS_Cfam_1.01168,312,076 - 68,420,280 (+)NCBI
UMICH_Zoey_3.11166,828,471 - 66,936,337 (+)NCBI
UNSW_CanFamBas_1.01166,851,734 - 66,959,739 (+)NCBI
UU_Cfam_GSD_1.01167,596,127 - 67,704,210 (+)NCBI
SNX30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9112,750,760 - 112,881,671 (+)EnsemblGRCh38hg38GRCh38
GRCh389112,749,723 - 112,875,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379115,513,040 - 115,637,267 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369114,552,955 - 114,677,088 (+)NCBINCBI36hg18NCBI36
Celera986,330,021 - 86,454,125 (-)NCBI
Cytogenetic Map9q32NCBI
HuRef985,110,784 - 85,235,103 (+)NCBIHuRef
CHM1_19115,660,589 - 115,784,556 (+)NCBICHM1_1
Snx30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,805,137 - 59,904,740 (+)NCBIGRCm39mm39
GRCm39 Ensembl459,805,840 - 59,904,737 (+)Ensembl
GRCm38459,805,131 - 59,904,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,805,840 - 59,904,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv37459,818,522 - 59,917,612 (+)NCBIGRCm37mm9NCBIm37
MGSCv36459,899,704 - 59,998,794 (+)NCBImm8
Celera459,722,562 - 59,821,429 (+)NCBICelera
Cytogenetic Map4B3NCBI
Snx30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2574,683,902 - 74,813,013 (+)NCBI
Rnor_6.0 Ensembl577,052,484 - 77,157,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0577,052,445 - 77,161,964 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0581,185,823 - 81,292,332 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,924,034 - 78,037,119 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1577,929,367 - 78,042,520 (+)NCBI
Celera573,498,886 - 73,602,194 (+)NCBICelera
Cytogenetic Map5q24NCBI
Snx30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,567,317 - 14,619,637 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,567,317 - 14,645,442 (-)NCBIChiLan1.0ChiLan1.0
SNX30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19112,031,879 - 112,150,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,031,860 - 112,143,933 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0983,878,128 - 83,997,124 (+)NCBIMhudiblu_PPA_v0panPan3
Snx30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,473,720 - 182,582,022 (+)NCBI
SpeTri2.0NW_004936559684,536 - 792,829 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,428,461 - 253,555,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,234,538 - 284,364,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX30
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,650,088 - 26,774,395 (-)NCBI
ChlSab1.1 Ensembl1226,656,221 - 26,774,009 (-)Ensembl
Snx30
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476022,138,646 - 22,261,392 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 8 8
Low 5 5 19 6 6 6 6 1 4 10 6
Below cutoff 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000004915   ⟹   ENSCAFP00000004554
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1167,233,256 - 67,289,224 (+)Ensembl
RefSeq Acc Id: XM_022424945   ⟹   XP_022280653
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11167,233,469 - 67,294,159 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038490987   ⟹   XP_038346915
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11166,828,471 - 66,936,337 (+)NCBI
RefSeq Acc Id: XM_038553126   ⟹   XP_038409054
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01167,596,127 - 67,704,210 (+)NCBI
RefSeq Acc Id: XM_038617002   ⟹   XP_038472930
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01166,851,734 - 66,959,739 (+)NCBI
RefSeq Acc Id: XM_038657379   ⟹   XP_038513307
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1165,593,004 - 65,700,845 (+)NCBI
RefSeq Acc Id: XM_038682459   ⟹   XP_038538387
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01168,312,076 - 68,420,280 (+)NCBI
RefSeq Acc Id: XM_038682460   ⟹   XP_038538388
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01168,349,286 - 68,420,280 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_022280653   ⟸   XM_022424945
- Sequence:
RefSeq Acc Id: ENSCAFP00000004554   ⟸   ENSCAFT00000004915
RefSeq Acc Id: XP_038346915   ⟸   XM_038490987
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038472930   ⟸   XM_038617002
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038538387   ⟸   XM_038682459
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038538388   ⟸   XM_038682460
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038513307   ⟸   XM_038657379
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038409054   ⟸   XM_038553126
- Peptide Label: isoform X1
Protein Domains
PX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003059 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000004554 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004915 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX30 UniProtKB/TrEMBL
NCBI Gene SNX30 ENTREZGENE
PANTHER PTHR45949:SF1 UniProtKB/TrEMBL
Pfam BAR UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt F1Q3P2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46637 ENTREZGENE