ARAF (A-Raf proto-oncogene, serine/threonine kinase) - Rat Genome Database

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Gene: ARAF (A-Raf proto-oncogene, serine/threonine kinase) Canis lupus familiaris
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Symbol: ARAF
Name: A-Raf proto-oncogene, serine/threonine kinase
RGD ID: 12402597
Description: ENCODES a protein that exhibits MAP kinase kinase kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase A-Raf; v-raf murine sarcoma 3611 viral oncogene homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,180,082 - 41,191,579 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,180,250 - 41,191,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,555,116 - 15,566,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,314,276 - 41,325,765 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,314,438 - 41,325,764 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,301,898 - 41,313,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,290,159 - 41,301,648 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,382,798 - 41,394,286 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
mitochondrion  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARAF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,180,082 - 41,191,579 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,180,250 - 41,191,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,555,116 - 15,566,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,314,276 - 41,325,765 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,314,438 - 41,325,764 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,301,898 - 41,313,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,290,159 - 41,301,648 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,382,798 - 41,394,286 (+)NCBIUU_Cfam_GSD_1.0
ARAF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,561,205 - 47,571,908 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,561,205 - 47,571,908 (+)EnsemblGRCh38hg38GRCh38
GRCh37X47,420,604 - 47,431,307 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,305,522 - 47,316,264 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X47,176,760 - 47,187,553NCBI
CeleraX51,615,774 - 51,626,577 (+)NCBICelera
Cytogenetic MapXp11.3NCBI
HuRefX45,132,731 - 45,143,540 (+)NCBIHuRef
CHM1_1X47,451,606 - 47,462,422 (+)NCBICHM1_1
T2T-CHM13v2.0X46,971,095 - 46,981,798 (+)NCBIT2T-CHM13v2.0
Araf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,663,946 - 20,726,760 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,664,053 - 20,726,758 (+)EnsemblGRCm39 Ensembl
GRCm38X20,797,707 - 20,860,521 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,797,814 - 20,860,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X20,425,669 - 20,437,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X20,005,557 - 20,017,477 (+)NCBIMGSCv36mm8
CeleraX18,979,682 - 18,991,660 (+)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.3NCBI
Araf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,780,932 - 3,845,919 (-)NCBIGRCr8
mRatBN7.2X1,227,392 - 1,292,356 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,227,392 - 1,239,073 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX1,255,531 - 1,267,209 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X4,731,222 - 4,742,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X1,052,386 - 1,064,071 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X1,369,534 - 1,391,603 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,379,194 - 1,390,873 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X2,194,385 - 2,206,064 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X12,556,904 - 12,568,583 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X12,562,471 - 12,572,791 (-)NCBI
CeleraX1,795,227 - 1,806,868 (-)NCBICelera
Cytogenetic MapXq11NCBI
Araf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516521,479 - 533,212 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955516521,479 - 532,980 (-)NCBIChiLan1.0ChiLan1.0
ARAF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,187,387 - 49,198,328 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,190,579 - 49,201,699 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X39,997,026 - 40,007,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X47,893,153 - 47,904,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,893,153 - 47,904,643 (+)Ensemblpanpan1.1panPan2
Araf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,482,616 - 33,494,254 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650213,323,355 - 13,335,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650213,323,365 - 13,335,003 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARAF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,078,206 - 42,090,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,078,202 - 42,090,250 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,388,650 - 47,400,702 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXp13NCBI
LOC103231895
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,738,406 - 44,748,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX44,740,181 - 44,748,550 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366656638,210 - 47,870 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Araf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624978100,505 - 110,646 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462497899,605 - 110,645 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARAF
61 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 10 6
Low 8
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000024017   ⟹   ENSCAFP00000022298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX41,180,250 - 41,191,310 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054117   ⟹   ENSCAFP00845042519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX41,314,438 - 41,325,749 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054125   ⟹   ENSCAFP00845042527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX41,314,443 - 41,325,764 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054135   ⟹   ENSCAFP00845042537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX41,314,505 - 41,325,762 (+)Ensembl
RefSeq Acc Id: XM_014111600   ⟹   XP_013967075
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X41,180,082 - 41,191,579 (+)NCBI
Dog10K_Boxer_TashaX15,555,116 - 15,566,605 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038449903   ⟹   XP_038305831
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X41,314,276 - 41,325,765 (+)NCBI
RefSeq Acc Id: XM_038523346   ⟹   XP_038379274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X41,301,898 - 41,313,372 (+)NCBI
RefSeq Acc Id: XM_038587314   ⟹   XP_038443242
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X41,382,798 - 41,394,286 (+)NCBI
RefSeq Acc Id: XM_038651825   ⟹   XP_038507753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X41,290,159 - 41,301,648 (+)NCBI
RefSeq Acc Id: XP_013967075   ⟸   XM_014111600
- UniProtKB: A0A8C0LB93 (UniProtKB/TrEMBL),   A0A8C0T3V7 (UniProtKB/TrEMBL),   A0A8I3S7N0 (UniProtKB/TrEMBL),   A0A8P0PLJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000022298   ⟸   ENSCAFT00000024017
RefSeq Acc Id: XP_038379274   ⟸   XM_038523346
RefSeq Acc Id: XP_038507753   ⟸   XM_038651825
RefSeq Acc Id: XP_038305831   ⟸   XM_038449903
- UniProtKB: A0A8C0LB93 (UniProtKB/TrEMBL),   A0A8C0T3V7 (UniProtKB/TrEMBL),   A0A8I3S7N0 (UniProtKB/TrEMBL),   A0A8P0PLJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038443242   ⟸   XM_038587314
- UniProtKB: A0A8C0LB93 (UniProtKB/TrEMBL),   A0A8C0T3V7 (UniProtKB/TrEMBL),   A0A8I3S7N0 (UniProtKB/TrEMBL),   A0A8P0PLJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042527   ⟸   ENSCAFT00845054125
RefSeq Acc Id: ENSCAFP00845042519   ⟸   ENSCAFT00845054117
RefSeq Acc Id: ENSCAFP00845042537   ⟸   ENSCAFT00845054135
Protein Domains
Phorbol-ester/DAG-type   Protein kinase   RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015115 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040018104 UniProtKB/TrEMBL
  ENSCAFG00845030502 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024017.5 UniProtKB/TrEMBL
  ENSCAFT00000096615.1 UniProtKB/TrEMBL
  ENSCAFT00000104883.1 UniProtKB/TrEMBL
  ENSCAFT00040033445.1 UniProtKB/TrEMBL
  ENSCAFT00040033528.1 UniProtKB/TrEMBL
  ENSCAFT00845054117.1 UniProtKB/TrEMBL
  ENSCAFT00845054125 ENTREZGENE
  ENSCAFT00845054125.1 UniProtKB/TrEMBL
  ENSCAFT00845054135.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.20 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/TrEMBL
  DAG/PE-bd UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  RBD_dom UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene ARAF ENTREZGENE
PANTHER NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE UniProtKB/TrEMBL
  SERINE-THREONINE PROTEIN KINASE UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  RBD UniProtKB/TrEMBL
PRINTS DAGPEDOMAIN UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
  RBD UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART RBD UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A8C0LB93 ENTREZGENE
  A0A8C0T3V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z196_CANLF UniProtKB/TrEMBL
  A0A8I3Q3R4_CANLF UniProtKB/TrEMBL
  A0A8I3Q6Q1_CANLF UniProtKB/TrEMBL
  A0A8I3S7N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NGM5_CANLF UniProtKB/TrEMBL
  A0A8P0PLJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TIR3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38024 ENTREZGENE