AFG2A (AFG2 AAA ATPase homolog A) - Rat Genome Database

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Gene: AFG2A (AFG2 AAA ATPase homolog A) Canis lupus familiaris
Analyze
Symbol: AFG2A (Ensembl: SPATA5)
Name: AFG2 AAA ATPase homolog A (Ensembl:spermatosis associated 5)
RGD ID: 12402425
Description: ENCODES a protein that exhibits preribosome binding (ortholog); INVOLVED IN brain development (ortholog); ribosomal large subunit biogenesis (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); FOUND IN spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase family protein 2 homolog; SPATA5; spermatogenesis associated 5; spermatogenesis-associated protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11917,020,337 - 17,371,396 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1916,994,661 - 17,463,151 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1917,233,899 - 17,584,562 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01917,132,668 - 17,484,528 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11917,090,290 - 17,440,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01917,368,198 - 17,719,114 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01917,839,642 - 18,190,985 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AFG2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11917,020,337 - 17,371,396 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1916,994,661 - 17,463,151 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1917,233,899 - 17,584,562 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01917,132,668 - 17,484,528 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11917,090,290 - 17,440,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01917,368,198 - 17,719,114 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01917,839,642 - 18,190,985 (-)NCBIUU_Cfam_GSD_1.0
AFG2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384122,923,078 - 123,319,433 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4122,923,070 - 123,319,433 (+)EnsemblGRCh38hg38GRCh38
GRCh374123,844,233 - 124,240,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364124,063,675 - 124,460,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 344124,201,833 - 124,593,407NCBI
Celera4121,227,068 - 121,623,149 (+)NCBICelera
Cytogenetic Map4q28.1NCBI
HuRef4119,570,673 - 119,967,245 (+)NCBIHuRef
CHM1_14123,820,765 - 124,217,279 (+)NCBICHM1_1
T2T-CHM13v2.04126,227,197 - 126,623,517 (+)NCBIT2T-CHM13v2.0
Afg2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39337,474,052 - 37,633,245 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl337,474,045 - 37,633,245 (+)EnsemblGRCm39 Ensembl
GRCm38337,419,903 - 37,579,096 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl337,419,896 - 37,579,096 (+)EnsemblGRCm38mm10GRCm38
MGSCv37337,319,202 - 37,478,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36337,611,847 - 37,770,640 (+)NCBIMGSCv36mm8
Celera337,295,123 - 37,453,242 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map318.46NCBI
Afg2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82122,234,619 - 122,425,808 (+)NCBIGRCr8
mRatBN7.22120,306,417 - 120,497,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2120,306,412 - 120,497,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2126,869,277 - 127,060,635 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,981,783 - 125,173,154 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02119,610,740 - 119,802,117 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02124,149,872 - 124,341,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2124,149,872 - 124,341,131 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02143,758,068 - 143,950,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,962,875 - 124,154,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12123,913,002 - 124,104,391 (+)NCBI
Celera2115,253,057 - 115,441,808 (+)NCBICelera
Cytogenetic Map2q25NCBI
Afg2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542817,524,583 - 17,823,108 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542817,525,388 - 17,823,478 (-)NCBIChiLan1.0ChiLan1.0
AFG2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23120,699,939 - 121,092,742 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14120,965,751 - 121,358,911 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04115,101,064 - 115,489,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14126,245,508 - 126,632,165 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4126,256,152 - 126,631,500 (+)Ensemblpanpan1.1panPan2
Afg2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530164,912,369 - 65,214,617 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366621,958,268 - 2,208,207 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049366621,886,176 - 1,929,097 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366621,957,364 - 2,207,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFG2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8100,917,319 - 101,241,099 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18100,918,331 - 101,241,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28108,342,977 - 108,446,111 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AFG2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1770,188,246 - 70,585,022 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603749,158,187 - 49,516,718 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Afg2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247773,342,271 - 3,639,118 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247773,342,437 - 3,710,544 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AFG2A
3614 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 5 22 6 6 6 6 6 12 8 10 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005631830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014121427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038425816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038564721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038628833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_540960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002616206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005296993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005340172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005373957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005408001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005631830   ⟹   XP_005631887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11917,087,831 - 17,371,396 (-)NCBI
Dog10K_Boxer_Tasha1917,301,600 - 17,584,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014121427   ⟹   XP_013976902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11917,049,767 - 17,371,396 (-)NCBI
Dog10K_Boxer_Tasha1917,263,340 - 17,584,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405962   ⟹   XP_022261670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11917,196,330 - 17,371,396 (-)NCBI
Dog10K_Boxer_Tasha1917,326,953 - 17,584,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038425811   ⟹   XP_038281739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,162,107 - 17,484,528 (-)NCBI
RefSeq Acc Id: XM_038425812   ⟹   XP_038281740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,162,107 - 17,484,528 (-)NCBI
RefSeq Acc Id: XM_038425813   ⟹   XP_038281741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,219,551 - 17,484,528 (-)NCBI
RefSeq Acc Id: XM_038425814   ⟹   XP_038281742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,200,416 - 17,484,528 (-)NCBI
RefSeq Acc Id: XM_038425815   ⟹   XP_038281743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,334,462 - 17,484,528 (-)NCBI
RefSeq Acc Id: XM_038425816   ⟹   XP_038281744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,225,777 - 17,484,528 (-)NCBI
RefSeq Acc Id: XM_038454709   ⟹   XP_038310637
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1917,320,729 - 17,584,562 (-)NCBI
RefSeq Acc Id: XM_038454710   ⟹   XP_038310638
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1917,435,327 - 17,584,562 (-)NCBI
RefSeq Acc Id: XM_038502044   ⟹   XP_038357972
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,119,715 - 17,440,587 (-)NCBI
RefSeq Acc Id: XM_038502045   ⟹   XP_038357973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,119,715 - 17,440,587 (-)NCBI
RefSeq Acc Id: XM_038502046   ⟹   XP_038357974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,176,872 - 17,440,587 (-)NCBI
RefSeq Acc Id: XM_038502047   ⟹   XP_038357975
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,157,759 - 17,440,587 (-)NCBI
RefSeq Acc Id: XM_038502048   ⟹   XP_038357976
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,291,281 - 17,440,587 (-)NCBI
RefSeq Acc Id: XM_038502049   ⟹   XP_038357977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,183,096 - 17,440,587 (-)NCBI
RefSeq Acc Id: XM_038564716   ⟹   XP_038420644
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01917,869,078 - 18,190,985 (-)NCBI
RefSeq Acc Id: XM_038564717   ⟹   XP_038420645
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01917,869,078 - 18,190,985 (-)NCBI
RefSeq Acc Id: XM_038564718   ⟹   XP_038420646
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01917,926,532 - 18,190,985 (-)NCBI
RefSeq Acc Id: XM_038564719   ⟹   XP_038420647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01917,907,405 - 18,190,985 (-)NCBI
RefSeq Acc Id: XM_038564720   ⟹   XP_038420648
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01918,041,407 - 18,190,985 (-)NCBI
RefSeq Acc Id: XM_038564721   ⟹   XP_038420649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01917,932,757 - 18,190,985 (-)NCBI
RefSeq Acc Id: XM_038628828   ⟹   XP_038484756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,397,579 - 17,719,114 (-)NCBI
RefSeq Acc Id: XM_038628829   ⟹   XP_038484757
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,397,579 - 17,719,114 (-)NCBI
RefSeq Acc Id: XM_038628830   ⟹   XP_038484758
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,455,012 - 17,719,114 (-)NCBI
RefSeq Acc Id: XM_038628831   ⟹   XP_038484759
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,435,648 - 17,719,114 (-)NCBI
RefSeq Acc Id: XM_038628832   ⟹   XP_038484760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,569,400 - 17,719,114 (-)NCBI
RefSeq Acc Id: XM_038628833   ⟹   XP_038484761
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,461,212 - 17,719,114 (-)NCBI
RefSeq Acc Id: XM_540960   ⟹   XP_540960
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11917,049,767 - 17,371,396 (-)NCBI
Dog10K_Boxer_Tasha1917,263,340 - 17,584,562 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002616206
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11917,020,337 - 17,371,396 (-)NCBI
Dog10K_Boxer_Tasha1917,233,899 - 17,584,562 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005296993
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01917,132,668 - 17,484,528 (-)NCBI
RefSeq Acc Id: XR_005340172
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11917,090,290 - 17,440,587 (-)NCBI
RefSeq Acc Id: XR_005373957
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01917,839,642 - 18,190,985 (-)NCBI
RefSeq Acc Id: XR_005408001
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01917,368,198 - 17,719,114 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005631887 (Get FASTA)   NCBI Sequence Viewer  
  XP_013976902 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038281744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310637 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310638 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357972 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357973 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357974 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357975 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038357977 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420644 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420645 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420646 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420647 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420648 (Get FASTA)   NCBI Sequence Viewer  
  XP_038420649 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484756 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484757 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484758 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484759 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484760 (Get FASTA)   NCBI Sequence Viewer  
  XP_038484761 (Get FASTA)   NCBI Sequence Viewer  
  XP_540960 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000005923.5
  ENSCAFP00000044947.2
  ENSCAFP00000050397.2
  ENSCAFP00000060936.2
  ENSCAFP00000065643.2
  ENSCAFP00000069660.1
  ENSCAFP00030009905.1
  ENSCAFP00040019958.1
  ENSCAFP00040020200.1
  ENSCAFP00845026640.1
  ENSCAFP00845026779
  ENSCAFP00845026779.1
  ENSCAFP00845026830.1
  ENSCAFP00845026995
  ENSCAFP00845026995.1
RefSeq Acc Id: XP_540960   ⟸   XM_540960
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L190 (UniProtKB/TrEMBL),   A0A8C0SDR3 (UniProtKB/TrEMBL),   A0A8I3PGQ5 (UniProtKB/TrEMBL),   A0A8I3S3Z7 (UniProtKB/TrEMBL),   A0A8P0TH31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013976902   ⟸   XM_014121427
- Peptide Label: isoform X1
- UniProtKB: A0A8I3S3Z7 (UniProtKB/TrEMBL),   A0A8P0TH31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005631887   ⟸   XM_005631830
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261670   ⟸   XM_022405962
- Peptide Label: isoform X6
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038357973   ⟸   XM_038502045
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038357972   ⟸   XM_038502044
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038357975   ⟸   XM_038502047
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038357974   ⟸   XM_038502046
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038357977   ⟸   XM_038502049
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038357976   ⟸   XM_038502048
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038484757   ⟸   XM_038628829
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038484756   ⟸   XM_038628828
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038484759   ⟸   XM_038628831
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038484758   ⟸   XM_038628830
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038484761   ⟸   XM_038628833
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038484760   ⟸   XM_038628832
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038281740   ⟸   XM_038425812
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L190 (UniProtKB/TrEMBL),   A0A8C0SDR3 (UniProtKB/TrEMBL),   A0A8I3PGQ5 (UniProtKB/TrEMBL),   A0A8I3S3Z7 (UniProtKB/TrEMBL),   A0A8P0TH31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281739   ⟸   XM_038425811
- Peptide Label: isoform X1
- UniProtKB: A0A8I3S3Z7 (UniProtKB/TrEMBL),   A0A8P0TH31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281742   ⟸   XM_038425814
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281741   ⟸   XM_038425813
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P9V5 (UniProtKB/TrEMBL),   A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281744   ⟸   XM_038425816
- Peptide Label: isoform X6
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281743   ⟸   XM_038425815
- Peptide Label: isoform X5
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310637   ⟸   XM_038454709
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P9V5 (UniProtKB/TrEMBL),   A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310638   ⟸   XM_038454710
- Peptide Label: isoform X8
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420645   ⟸   XM_038564717
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L190 (UniProtKB/TrEMBL),   A0A8C0SDR3 (UniProtKB/TrEMBL),   A0A8I3PGQ5 (UniProtKB/TrEMBL),   A0A8I3S3Z7 (UniProtKB/TrEMBL),   A0A8P0TH31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420644   ⟸   XM_038564716
- Peptide Label: isoform X1
- UniProtKB: A0A8I3S3Z7 (UniProtKB/TrEMBL),   A0A8P0TH31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420647   ⟸   XM_038564719
- Peptide Label: isoform X4
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420646   ⟸   XM_038564718
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL),   A0A8I3P9V5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420649   ⟸   XM_038564721
- Peptide Label: isoform X6
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420648   ⟸   XM_038564720
- Peptide Label: isoform X5
- UniProtKB: A0A8C0L3S5 (UniProtKB/TrEMBL)
Protein Domains
AAA+ ATPase

Promoters
RGD ID:13686693
Promoter ID:EPDNEW_C4761
Type:multiple initiation site
Name:SPATA5_1
Description:spermatogenesis associated 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11917,371,387 - 17,371,447EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003988 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006166 UniProtKB/TrEMBL
  ENSCAFG00040012434 UniProtKB/TrEMBL
  ENSCAFG00040012631 UniProtKB/TrEMBL
  ENSCAFG00845019163 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006398.5 UniProtKB/TrEMBL
  ENSCAFT00000076603.2 UniProtKB/TrEMBL
  ENSCAFT00000076622.2 UniProtKB/TrEMBL
  ENSCAFT00000081140.2 UniProtKB/TrEMBL
  ENSCAFT00000091794.2 UniProtKB/TrEMBL
  ENSCAFT00000103003.1 UniProtKB/TrEMBL
  ENSCAFT00030011330.1 UniProtKB/TrEMBL
  ENSCAFT00040023024.1 UniProtKB/TrEMBL
  ENSCAFT00040023286.1 UniProtKB/TrEMBL
  ENSCAFT00845034037.1 UniProtKB/TrEMBL
  ENSCAFT00845034205 ENTREZGENE
  ENSCAFT00845034205.1 UniProtKB/TrEMBL
  ENSCAFT00845034276.1 UniProtKB/TrEMBL
  ENSCAFT00845034467 ENTREZGENE
  ENSCAFT00845034467.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  2.40.40.20 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  6.20.90.30 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  Asp_de-COase-like_dom_sf UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene SPATA5 ENTREZGENE
PANTHER AAA-FAMILY ATPASE UniProtKB/TrEMBL
  ATPASE FAMILY PROTEIN 2 HOMOLOG UniProtKB/TrEMBL
  PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF83 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  FGF UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
  HBGF_FGF UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
  SSF50692 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0L190 ENTREZGENE
  A0A8C0L3S5 ENTREZGENE
  A0A8C0SDR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SGC5_CANLF UniProtKB/TrEMBL
  A0A8I3NXV8_CANLF UniProtKB/TrEMBL
  A0A8I3P9V5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PGQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S3Z7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SY11_CANLF UniProtKB/TrEMBL
  A0A8P0TCP2_CANLF UniProtKB/TrEMBL
  A0A8P0TH31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TM83_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0S9L3 UniProtKB/TrEMBL
VGNC ID VGNC:54364 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-03 AFG2A  AFG2 AAA ATPase homolog A  SPATA5  spermatogenesis associated 5  Symbol and/or name change 19259463 PROVISIONAL