SULF2 (sulfatase 2) - Rat Genome Database

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Gene: SULF2 (sulfatase 2) Canis lupus familiaris
Analyze
Symbol: SULF2
Name: sulfatase 2
RGD ID: 12402277
Description: ENCODES a protein that exhibits arylsulfatase activity (inferred); calcium ion binding (inferred); glycosaminoglycan binding (inferred); INVOLVED IN liver regeneration (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); positive regulation of endothelin production (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); endometriosis (ortholog); focal epilepsy (ortholog); FOUND IN cell surface (inferred); endoplasmic reticulum (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: extracellular sulfatase Sulf-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12434,732,000 - 34,850,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2434,732,037 - 34,828,569 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2434,191,687 - 34,280,428 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02435,439,403 - 35,557,819 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2435,439,411 - 35,536,496 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12434,679,921 - 34,768,517 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02434,814,508 - 34,903,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02435,355,060 - 35,443,790 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:16174644   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SULF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12434,732,000 - 34,850,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2434,732,037 - 34,828,569 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2434,191,687 - 34,280,428 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02435,439,403 - 35,557,819 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2435,439,411 - 35,536,496 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12434,679,921 - 34,768,517 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02434,814,508 - 34,903,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02435,355,060 - 35,443,790 (-)NCBIUU_Cfam_GSD_1.0
SULF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382047,657,406 - 47,786,627 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2047,656,197 - 47,786,616 (-)EnsemblGRCh38hg38GRCh38
GRCh372046,286,150 - 46,415,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362045,719,559 - 45,848,215 (-)NCBINCBI36Build 36hg18NCBI36
Celera2042,999,802 - 43,129,055 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2043,027,474 - 43,156,926 (-)NCBIHuRef
CHM1_12046,189,453 - 46,318,659 (-)NCBICHM1_1
T2T-CHM13v2.02049,395,801 - 49,525,734 (-)NCBIT2T-CHM13v2.0
Sulf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,915,819 - 165,997,603 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,915,009 - 165,997,583 (-)EnsemblGRCm39 Ensembl
GRCm382166,073,899 - 166,155,683 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2166,073,089 - 166,155,663 (-)EnsemblGRCm38mm10GRCm38
MGSCv372165,898,589 - 165,981,156 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362165,765,126 - 165,846,821 (-)NCBIMGSCv36mm8
Celera2172,011,524 - 172,094,475 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map286.31NCBI
Sulf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83175,241,322 - 175,323,808 (-)NCBIGRCr8
mRatBN7.23154,822,079 - 154,904,566 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,822,085 - 154,904,415 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3158,622,880 - 158,705,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03167,121,880 - 167,204,286 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03164,863,526 - 164,945,933 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03162,791,349 - 162,872,984 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,791,355 - 162,872,831 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03168,962,194 - 169,044,229 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43157,197,256 - 157,298,389 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13157,103,302 - 157,193,066 (-)NCBI
Celera3153,407,025 - 153,487,534 (-)NCBICelera
Cytogenetic Map3q42NCBI
Sulf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554459,920,789 - 10,020,491 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554459,919,472 - 10,020,491 (+)NCBIChiLan1.0ChiLan1.0
SULF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22153,396,301 - 53,526,197 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12053,389,407 - 53,519,301 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02043,992,927 - 44,122,598 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12045,074,069 - 45,203,316 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2045,074,069 - 45,173,893 (-)Ensemblpanpan1.1panPan2
Sulf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640190,365,249 - 190,446,381 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365145,819,400 - 5,899,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365145,819,375 - 5,899,324 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SULF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1749,663,731 - 49,804,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11749,663,721 - 49,805,118 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21755,891,507 - 56,010,288 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SULF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1216,140,307 - 16,270,787 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl216,140,427 - 16,268,750 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605064,676,540 - 64,810,167 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sulf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247907,129,815 - 7,228,454 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247907,129,863 - 7,228,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SULF2
2089 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 2 6 6 4 6
Low 5 18 6 4 6 3 6 8 6
Below cutoff 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001048090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005634687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000017345   ⟹   ENSCAFP00000016055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2434,732,507 - 34,828,569 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000066108   ⟹   ENSCAFP00000063157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2434,732,037 - 34,828,569 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077771   ⟹   ENSCAFP00000048825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2434,732,037 - 34,828,569 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845039964   ⟹   ENSCAFP00845031294
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2435,439,411 - 35,536,496 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845040108   ⟹   ENSCAFP00845031408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2435,439,411 - 35,536,496 (-)Ensembl
RefSeq Acc Id: NM_001048090   ⟹   NP_001041555
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12434,732,924 - 34,821,144 (-)NCBI
Dog10K_Boxer_Tasha2434,191,687 - 34,280,428 (-)NCBI
ROS_Cfam_1.02435,440,327 - 35,529,072 (-)NCBI
UMICH_Zoey_3.12434,679,921 - 34,768,517 (-)NCBI
UNSW_CanFamBas_1.02434,814,508 - 34,903,572 (-)NCBI
UU_Cfam_GSD_1.02435,355,060 - 35,443,790 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038432811   ⟹   XP_038288739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,547,539 (-)NCBI
RefSeq Acc Id: XM_038432812   ⟹   XP_038288740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,547,504 (-)NCBI
RefSeq Acc Id: XM_038432813   ⟹   XP_038288741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,547,539 (-)NCBI
RefSeq Acc Id: XM_038432814   ⟹   XP_038288742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,556,837 (-)NCBI
RefSeq Acc Id: XM_038432815   ⟹   XP_038288743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,534,829 (-)NCBI
RefSeq Acc Id: XM_038432816   ⟹   XP_038288744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,557,520 (-)NCBI
RefSeq Acc Id: XM_038432817   ⟹   XP_038288745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02435,439,403 - 35,557,819 (-)NCBI
RefSeq Acc Id: NP_001041555   ⟸   NM_001048090
- Peptide Label: precursor
- UniProtKB: Q32KH1 (UniProtKB/TrEMBL),   A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000048825   ⟸   ENSCAFT00000077771
RefSeq Acc Id: ENSCAFP00000016055   ⟸   ENSCAFT00000017345
RefSeq Acc Id: ENSCAFP00000063157   ⟸   ENSCAFT00000066108
RefSeq Acc Id: XP_038288745   ⟸   XM_038432817
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288744   ⟸   XM_038432816
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288742   ⟸   XM_038432814
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288739   ⟸   XM_038432811
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288741   ⟸   XM_038432813
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288740   ⟸   XM_038432812
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288743   ⟸   XM_038432815
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KRQ7 (UniProtKB/TrEMBL),   A0A8C0S0M9 (UniProtKB/TrEMBL),   F1PX97 (UniProtKB/TrEMBL),   Q32KH1 (UniProtKB/TrEMBL),   A0A8C0QPJ2 (UniProtKB/TrEMBL),   A0A8I3PCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845031294   ⟸   ENSCAFT00845039964
RefSeq Acc Id: ENSCAFP00845031408   ⟸   ENSCAFT00845040108

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010874 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040008057 UniProtKB/TrEMBL
  ENSCAFG00845022596 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017345.5 UniProtKB/TrEMBL
  ENSCAFT00000066108.2 UniProtKB/TrEMBL
  ENSCAFT00000077771.2 UniProtKB/TrEMBL
  ENSCAFT00040015105.1 UniProtKB/TrEMBL
  ENSCAFT00040015151.1 UniProtKB/TrEMBL
  ENSCAFT00845039964 ENTREZGENE
  ENSCAFT00845039964.1 UniProtKB/TrEMBL
  ENSCAFT00845040108.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core_sf UniProtKB/TrEMBL
  Extracellular_sulfatase UniProtKB/TrEMBL
  Extracellular_sulfatase_C UniProtKB/TrEMBL
  Sulfatase_CS UniProtKB/TrEMBL
  Sulfatase_N UniProtKB/TrEMBL
KEGG Report cfa:477254 UniProtKB/TrEMBL
NCBI Gene SULF2 ENTREZGENE
PANTHER EXTRACELLULAR SULFATASE SULF-2 UniProtKB/TrEMBL
  N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam DUF3740 UniProtKB/TrEMBL
  Sulfatase UniProtKB/TrEMBL
PIRSF Sulf1 UniProtKB/TrEMBL
PROSITE SULFATASE_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53649 UniProtKB/TrEMBL
UniProt A0A8C0KRQ7 ENTREZGENE
  A0A8C0QPJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S0M9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PCK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PBY4_CANLF UniProtKB/TrEMBL
  F1PX97 ENTREZGENE
  Q32KH1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1PX97 UniProtKB/TrEMBL
VGNC ID VGNC:46975 ENTREZGENE