HOMER1 (homer scaffold protein 1) - Rat Genome Database

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Gene: HOMER1 (homer scaffold protein 1) Canis lupus familiaris
Analyze
Symbol: HOMER1
Name: homer scaffold protein 1
RGD ID: 12399933
Description: ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); circadian rhythm (ortholog); G protein-coupled glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH Cocaine-Related Disorders (ortholog); Drug-Induced Dyskinesia (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN dendrite (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homer homolog 1; homer protein homolog 1; homer scaffolding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,395,337 - 27,525,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,400,839 - 27,523,320 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,635,060 - 28,765,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,314,347 - 27,445,373 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,319,051 - 27,445,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,254,336 - 27,384,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,231,171 - 27,362,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,511,836 - 27,642,805 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HOMER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,395,337 - 27,525,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,400,839 - 27,523,320 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,635,060 - 28,765,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,314,347 - 27,445,373 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,319,051 - 27,445,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,254,336 - 27,384,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,231,171 - 27,362,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,511,836 - 27,642,805 (+)NCBIUU_Cfam_GSD_1.0
HOMER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38579,372,636 - 79,514,134 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl579,372,636 - 79,514,134 (-)EnsemblGRCh38hg38GRCh38
GRCh37578,668,459 - 78,809,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36578,705,542 - 78,845,456 (-)NCBINCBI36Build 36hg18NCBI36
Build 34578,705,542 - 78,845,456NCBI
Celera574,569,550 - 74,709,526 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef573,877,773 - 74,017,416 (-)NCBIHuRef
CHM1_1578,102,358 - 78,242,362 (-)NCBICHM1_1
T2T-CHM13v2.0579,856,812 - 79,998,313 (-)NCBIT2T-CHM13v2.0
Homer1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,440,265 - 93,549,471 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,436,143 - 93,541,637 (+)EnsemblGRCm39 Ensembl
GRCm381393,303,757 - 93,405,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,299,635 - 93,405,129 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,074,450 - 94,174,917 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361394,405,552 - 94,504,882 (+)NCBIMGSCv36mm8
Celera1396,912,321 - 97,012,695 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.83NCBI
Homer1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,279,012 - 26,388,279 (+)NCBIGRCr8
mRatBN7.2224,542,777 - 24,645,715 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,543,093 - 24,644,785 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx231,571,304 - 31,672,829 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0229,671,594 - 29,773,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0224,494,532 - 24,596,897 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0222,909,550 - 23,012,303 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,909,569 - 23,009,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0242,106,531 - 42,208,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera220,619,882 - 20,720,929 (+)NCBICelera
Cytogenetic Map2q12NCBI
Homer1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542521,644,571 - 21,775,735 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542521,644,577 - 21,774,843 (+)NCBIChiLan1.0ChiLan1.0
HOMER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2435,785,689 - 35,926,708 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1533,939,170 - 34,080,335 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0535,794,627 - 35,936,111 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1536,065,045 - 36,205,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl536,064,665 - 36,205,928 (+)Ensemblpanpan1.1panPan2
Homer1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213183,538,579 - 183,681,403 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365497,188,850 - 7,320,312 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365497,189,588 - 7,320,117 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOMER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,122,882 - 88,255,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1288,116,664 - 88,253,843 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2289,846,977 - 89,904,301 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2289,987,133 - 89,996,112 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HOMER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1473,591,105 - 73,729,680 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl473,589,495 - 73,728,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604922,438,015 - 22,576,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Homer1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248693,880,001 - 4,012,240 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248693,878,646 - 4,012,211 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HOMER1
1426 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 21 6 6 6 12 1 8 1
Low 1 1 6 6 7 2 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022416761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038660967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_844616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000014430   ⟹   ENSCAFP00000013344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl327,400,839 - 27,523,320 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000068456   ⟹   ENSCAFP00000044318
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl327,400,839 - 27,523,320 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077240   ⟹   ENSCAFP00000055695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl327,400,839 - 27,522,895 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079596   ⟹   ENSCAFP00000066510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl327,400,900 - 27,523,320 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845011975   ⟹   ENSCAFP00845009346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl327,319,051 - 27,445,496 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845011999   ⟹   ENSCAFP00845009362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl327,319,051 - 27,445,496 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012017   ⟹   ENSCAFP00845009376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl327,319,051 - 27,442,450 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012042   ⟹   ENSCAFP00845009400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl327,319,051 - 27,397,656 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012079   ⟹   ENSCAFP00845009430
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl327,319,870 - 27,445,574 (+)Ensembl
RefSeq Acc Id: XM_022416761   ⟹   XP_022272469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1327,395,337 - 27,525,822 (+)NCBI
Dog10K_Boxer_Tasha328,635,060 - 28,765,722 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022416762   ⟹   XP_022272470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1327,414,409 - 27,525,822 (+)NCBI
Dog10K_Boxer_Tasha328,654,083 - 28,765,722 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038471541   ⟹   XP_038327469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1327,286,454 - 27,384,769 (+)NCBI
RefSeq Acc Id: XM_038471542   ⟹   XP_038327470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1327,259,050 - 27,384,769 (+)NCBI
RefSeq Acc Id: XM_038471543   ⟹   XP_038327471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1327,254,336 - 27,384,769 (+)NCBI
RefSeq Acc Id: XM_038471544   ⟹   XP_038327472
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1327,273,362 - 27,384,769 (+)NCBI
RefSeq Acc Id: XM_038471631   ⟹   XP_038327559
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha328,667,180 - 28,765,722 (+)NCBI
RefSeq Acc Id: XM_038532469   ⟹   XP_038388397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0327,543,972 - 27,642,805 (+)NCBI
RefSeq Acc Id: XM_038532470   ⟹   XP_038388398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0327,516,551 - 27,642,805 (+)NCBI
RefSeq Acc Id: XM_038532471   ⟹   XP_038388399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0327,511,836 - 27,642,805 (+)NCBI
RefSeq Acc Id: XM_038532472   ⟹   XP_038388400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0327,530,866 - 27,642,805 (+)NCBI
RefSeq Acc Id: XM_038596756   ⟹   XP_038452684
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0327,263,665 - 27,362,707 (+)NCBI
RefSeq Acc Id: XM_038596757   ⟹   XP_038452685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0327,235,876 - 27,362,707 (+)NCBI
RefSeq Acc Id: XM_038596758   ⟹   XP_038452686
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0327,231,171 - 27,362,707 (+)NCBI
RefSeq Acc Id: XM_038596759   ⟹   XP_038452687
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0327,250,328 - 27,362,707 (+)NCBI
RefSeq Acc Id: XM_038660963   ⟹   XP_038516891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0327,346,534 - 27,445,373 (+)NCBI
RefSeq Acc Id: XM_038660964   ⟹   XP_038516892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0327,319,052 - 27,445,373 (+)NCBI
RefSeq Acc Id: XM_038660966   ⟹   XP_038516894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0327,314,347 - 27,445,373 (+)NCBI
RefSeq Acc Id: XM_038660967   ⟹   XP_038516895
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0327,333,358 - 27,445,373 (+)NCBI
RefSeq Acc Id: XM_844616   ⟹   XP_849709
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1327,400,081 - 27,525,822 (+)NCBI
Dog10K_Boxer_Tasha328,639,768 - 28,765,722 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_022272469 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272470 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327469 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327470 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327471 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327472 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327559 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452684 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452686 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452687 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516892 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516894 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516895 (Get FASTA)   NCBI Sequence Viewer  
  XP_849709 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000013344.3
  ENSCAFP00000055695.1
  ENSCAFP00000073518.1
  ENSCAFP00000075002.1
  ENSCAFP00030026269.1
  ENSCAFP00030026343.1
  ENSCAFP00030026383.1
  ENSCAFP00030026408.1
  ENSCAFP00030026447.1
  ENSCAFP00040006985.1
  ENSCAFP00040006994.1
  ENSCAFP00040006999.1
  ENSCAFP00040007005.1
  ENSCAFP00845009346
  ENSCAFP00845009346.1
  ENSCAFP00845009362.1
  ENSCAFP00845009376.1
  ENSCAFP00845009400.1
  ENSCAFP00845009430.1
Reference Protein Sequences
RefSeq Acc Id: XP_849709   ⟸   XM_844616
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL),   A0A8C0NFB8 (UniProtKB/TrEMBL),   A0A8I3RUZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272469   ⟸   XM_022416761
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272470   ⟸   XM_022416762
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000055695   ⟸   ENSCAFT00000077240
RefSeq Acc Id: ENSCAFP00000013344   ⟸   ENSCAFT00000014430
RefSeq Acc Id: ENSCAFP00000044318   ⟸   ENSCAFT00000068456
RefSeq Acc Id: ENSCAFP00000066510   ⟸   ENSCAFT00000079596
RefSeq Acc Id: XP_038327471   ⟸   XM_038471543
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038327470   ⟸   XM_038471542
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038327472   ⟸   XM_038471544
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038327469   ⟸   XM_038471541
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452686   ⟸   XM_038596758
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038452685   ⟸   XM_038596757
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038452687   ⟸   XM_038596759
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038452684   ⟸   XM_038596756
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516894   ⟸   XM_038660966
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516892   ⟸   XM_038660964
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL),   A0A8C0NFB8 (UniProtKB/TrEMBL),   A0A8I3RUZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516895   ⟸   XM_038660967
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516891   ⟸   XM_038660963
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038327559   ⟸   XM_038471631
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388399   ⟸   XM_038532471
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388398   ⟸   XM_038532470
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL),   A0A8C0NFB8 (UniProtKB/TrEMBL),   A0A8I3RUZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388400   ⟸   XM_038532472
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388397   ⟸   XM_038532469
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LPY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845009400   ⟸   ENSCAFT00845012042
RefSeq Acc Id: ENSCAFP00845009362   ⟸   ENSCAFT00845011999
RefSeq Acc Id: ENSCAFP00845009376   ⟸   ENSCAFT00845012017
RefSeq Acc Id: ENSCAFP00845009346   ⟸   ENSCAFT00845011975
RefSeq Acc Id: ENSCAFP00845009430   ⟸   ENSCAFT00845012079
Protein Domains
WH1

Promoters
RGD ID:13682699
Promoter ID:EPDNEW_C767
Type:single initiation site
Name:HOMER1_1
Description:homer scaffolding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1327,400,489 - 27,400,549EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009074 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016301 UniProtKB/TrEMBL
  ENSCAFG00040004186 UniProtKB/TrEMBL
  ENSCAFG00845006728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014430.5 UniProtKB/TrEMBL
  ENSCAFT00000077240.2 UniProtKB/TrEMBL
  ENSCAFT00000106866.1 UniProtKB/TrEMBL
  ENSCAFT00000107923.1 UniProtKB/TrEMBL
  ENSCAFT00030030122.1 UniProtKB/TrEMBL
  ENSCAFT00030030207.1 UniProtKB/TrEMBL
  ENSCAFT00030030251.1 UniProtKB/TrEMBL
  ENSCAFT00030030284.1 UniProtKB/TrEMBL
  ENSCAFT00030030331.1 UniProtKB/TrEMBL
  ENSCAFT00040008015.1 UniProtKB/TrEMBL
  ENSCAFT00040008026.1 UniProtKB/TrEMBL
  ENSCAFT00040008031.1 UniProtKB/TrEMBL
  ENSCAFT00040008037.1 UniProtKB/TrEMBL
  ENSCAFT00845011975 ENTREZGENE
  ENSCAFT00845011975.1 UniProtKB/TrEMBL
  ENSCAFT00845011999.1 UniProtKB/TrEMBL
  ENSCAFT00845012017.1 UniProtKB/TrEMBL
  ENSCAFT00845012042.1 UniProtKB/TrEMBL
  ENSCAFT00845012079.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Homer UniProtKB/TrEMBL
  Homer_EVH1 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WH1/EVH1_dom UniProtKB/TrEMBL
NCBI Gene HOMER1 ENTREZGENE
PANTHER HOMER PROTEIN HOMOLOG 1 UniProtKB/TrEMBL
  PTHR10918 UniProtKB/TrEMBL
Pfam WH1 UniProtKB/TrEMBL
PROSITE WH1 UniProtKB/TrEMBL
SMART WH1 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt A0A8C0LPY5 ENTREZGENE
  A0A8C0NFB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NS62_CANLF UniProtKB/TrEMBL
  A0A8C0Q0I2_CANLF UniProtKB/TrEMBL
  A0A8C0Q931_CANLF UniProtKB/TrEMBL
  A0A8C0RXH1_CANLF UniProtKB/TrEMBL
  A0A8I3MYT8_CANLF UniProtKB/TrEMBL
  A0A8I3MZV5_CANLF UniProtKB/TrEMBL
  A0A8I3N0S5_CANLF UniProtKB/TrEMBL
  A0A8I3N3V7_CANLF UniProtKB/TrEMBL
  A0A8I3RUZ0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41737 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-06 HOMER1  homer scaffold protein 1    homer scaffolding protein 1  Symbol and/or name change 5135510 APPROVED