BARHL2 (BarH like homeobox 2) - Rat Genome Database

Name: BARHL2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: BARHL2 (BarH like homeobox 2) Canis lupus familiaris

Analyze

Symbol:

BARHL2

Name:

BarH like homeobox 2

RGD ID:

12399330

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cell fate commitment (ortholog); cell fate determination (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); genetic disease (ortholog); Lymphatic Metastasis (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BarH-like 2; barH-like 2 homeobox protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BARHL2 (BarH like homeobox 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Barhl2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Barhl2 (BarH-like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Barhl2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BARHL2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Barhl2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BARHL2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BARHL2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Barhl2 (BarH like homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	57,971,077 - 57,977,197 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	57,971,018 - 57,977,211 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	60,675,782 - 60,681,623 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	58,355,942 - 58,361,782 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	58,355,347 - 58,361,798 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	58,029,710 - 58,035,547 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	58,005,081 - 58,010,922 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	58,485,088 - 58,490,931 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

colorectal cancer (ISO)

genetic disease (ISO)

Lymphatic Metastasis (ISO)

oral squamous cell carcinoma (ISO)

stomach cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amacrine cell differentiation (IEA,ISO)

cell fate commitment (IEA,ISO)

cell fate determination (IEA,ISO)

nervous system development (ISO)

neuron differentiation (IEA,ISO)

neuron migration (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of translation (IEA,ISO)

regulation of axon extension (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA,ISO)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

BARHL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	57,971,077 - 57,977,197 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	57,971,018 - 57,977,211 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	60,675,782 - 60,681,623 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	58,355,942 - 58,361,782 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	58,355,347 - 58,361,798 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	58,029,710 - 58,035,547 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	58,005,081 - 58,010,922 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	58,485,088 - 58,490,931 (+)	NCBI		UU_Cfam_GSD_1.0

BARHL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	90,711,539 - 90,717,302 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	90,711,539 - 90,717,302 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	91,177,096 - 91,182,859 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	90,950,167 - 90,955,382 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	90,889,599 - 90,894,815	NCBI
Celera	1	89,425,682 - 89,430,897 (-)	NCBI		Celera
Cytogenetic Map	1	p22.2	NCBI
HuRef	1	89,296,413 - 89,301,629 (-)	NCBI		HuRef
CHM1_1	1	91,292,732 - 91,297,947 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	90,555,903 - 90,561,666 (-)	NCBI		T2T-CHM13v2.0

Barhl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	106,600,389 - 106,606,032 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	106,600,389 - 106,606,032 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	106,452,523 - 106,458,166 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	106,452,523 - 106,458,166 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	106,881,542 - 106,887,185 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	106,881,542 - 106,887,185 (-)	NCBI		MGSCv36	mm8
Celera	5	103,565,328 - 103,570,954 (-)	NCBI		Celera
Cytogenetic Map	5	E5	NCBI
cM Map	5	51.43	NCBI

Barhl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	3,485,309 - 3,490,206 (+)	NCBI		GRCr8
mRatBN7.2	14	3,340,465 - 3,345,362 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	3,340,465 - 3,345,353 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	3,212,127 - 3,217,012 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	4,513,629 - 4,518,514 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	3,213,991 - 3,218,875 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	4,362,717 - 4,367,614 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	4,362,717 - 4,367,605 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	4,356,650 - 4,361,547 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	3,888,153 - 3,893,050 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	3,888,152 - 3,893,041 (+)	NCBI
Celera	14	3,342,723 - 3,347,622 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Barhl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	3,516,660 - 3,522,536 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	3,516,973 - 3,522,459 (+)	NCBI	ChiLan1.0	ChiLan1.0

BARHL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	136,306,017 - 136,313,430 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	135,461,979 - 135,468,959 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	93,373,317 - 93,378,667 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	92,121,017 - 92,126,036 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	92,121,017 - 92,126,036 (-)	Ensembl	panpan1.1		panPan2

Barhl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	100,812,786 - 100,818,760 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	8,129,207 - 8,135,237 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	8,129,213 - 8,134,744 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BARHL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	126,029,437 - 126,036,210 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	126,030,373 - 126,035,662 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	137,708,728 - 137,715,018 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BARHL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	42,743,465 - 42,757,833 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	42,743,888 - 42,749,876 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	75,223,048 - 75,228,743 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Barhl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	7,027,069 - 7,034,308 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	7,027,122 - 7,033,342 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in BARHL2
74 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium
Low								5	7
Below cutoff	1	5	14	3	4	3	3	6	1	5	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038480448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038538911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038667742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000032163 ⟹ ENSCAFP00000029951

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	57,971,018 - 57,977,211 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845030163 ⟹ ENSCAFP00845023654

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	58,355,347 - 58,361,798 (+)	Ensembl

RefSeq Acc Id:

XM_038480448 ⟹ XP_038336376

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	58,029,710 - 58,035,547 (+)	NCBI

RefSeq Acc Id:

XM_038538911 ⟹ XP_038394839

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	58,485,088 - 58,490,931 (+)	NCBI

RefSeq Acc Id:

XM_038603039 ⟹ XP_038458967

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	58,005,081 - 58,010,922 (+)	NCBI

RefSeq Acc Id:

XM_038667742 ⟹ XP_038523670

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	58,355,942 - 58,361,782 (+)	NCBI

RefSeq Acc Id:

XM_848178 ⟹ XP_853271

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	57,971,077 - 57,977,197 (+)	NCBI
Dog10K_Boxer_Tasha	6	60,675,782 - 60,681,623 (+)	NCBI

Sequence:

show sequence

CCCTTCTCCCCACCCCTACTTTATGAATACCGAAAACAAAAAAGTGTCCAAAGTGTCCACCGAT
TGCCACTTCCCGGTTATCCTTCCTTCCCTCCCCGCCCCGCTTTTCTTTTCCTTCTTCCTTTCTT
TTTCTTTCTTTCTTTCTTTCTTTTTTTGGAAGCCGCGACAACCTTGTTGAGTGTTTATCTTGTT
TTACGATCGATAGCTTCCTCGGCTCGGTCGGGGCGGCTGCTGAGCGGCGGAGCGGCGCGGACCT
CATGTAGAAATGACAACAATGGAAGGGGCCAGCGGGTCGAGTTTTGGAATAGACACGATCTTGT
CCAGTGCCAGTTCGGGCAGCCCCGGCATGATGAACGGAGATTTCCGCCCGCTCGGCGAGGCCAG
GACCGCGGATTTTAGGAGTCAGGCCACTCCGTCCCCCTGCTCGGAGATTGATACAGTAGGAACG
GCGCCTTCTTCTCCCATCTCGGTCACCATGGAGCCCCCGGAGCCGCACCTGGTGGCGGAAGGGC
CCCCGCACCACCACCACCTGCACCACGGCCAGCCGCCGCCGCCCGCCGCGGCCCCCGCGCAAAG
TTTGCAGCCTTCCCCGCAGCAGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGCCGCCG
CCCCAGCAGCCGCCGCCGCCGCCACCGGCCCAGCAGCTGGGCTCGGCCGCCTCGGCCCCCAGGA
CTTCCACCTCTTCTTTTTTAATTAAGGACATCTTGGGCGACAGCAAACCCCTGGCGGCGTGTGC
GCCCTACAGCACCAGCGTGTCCTCGCCCCACCACACCCCGAAGCAGGAGAGCAACGCCGCGCAC
GAGAGCTTCAGGCCGAAGCTCGAGCAGGAGGACGGCAAGACCAAGCTCGACAAGCGGGAAGACG
CGCAGAGCGACCTCAAATGCCACGGAACAAAGGAGGAGGGAGACCGGGAGATTACAAGTAGCCG
AGAGAGTCCCCCTGTGAGAGCCAAAAAGCCTCGCAAAGCCAGGACAGCTTTCTCCGATCACCAA
CTCAATCAGCTGGAGCGTAGCTTTGAGCGGCAGAAGTATCTGAGTGTGCAGGACCGCATGGACC
TTGCAGCTGCGCTCAACCTCACGGACACCCAAGTCAAGACTTGGTACCAGAACCGAAGGACCAA
GTGGAAGCGGCAGACCGCGGTGGGCCTGGAGCTGCTGGCCGAGGCGGGGAACTACTCGGCGCTG
CAGAGGATGTTTCCGTCGCCTTATTTCTACCACCCAAGCCTGCTGGGCAGCATGGACAGCACTA
CGGCCGCCGCGGCTGCCGCAGCCATGTACAGCAGCATGTACCGGACTCCTCCCGCGCCCCATCC
CCAGCTGCAGCGGCCCCTGGTCCCCCGCGTGCTCATCCACGGCCTGGGGCCCAGGGGCCAGCCG
GCCCTCAATCCCTTGTCCAACCCCATCCCAGGCACCCCGCACCCCCGGTGAAGAACGAACCACT
GGCAGCGCTGCAGTCCCTTCCCCGAGTCCCCTCCCTGACCGGACAGCTGCCCCTCCTCTCCCGG
CTCCAGGCTGCGGGGCCTCTCTCGGGAGTGACCCCCGGGAAGCAGAGAAGTCAGAGAAGAAGCC
GCTCAGCAATGGGGGGGGGGCCCCCAAAGAGGAGCCAGCCCTCCGCTCTCTATCTCCCCACCCC
CAGAAACAGGGCTGGAAAGCTCCCCACAGCAGTGTGACTGGCGAAAACGCTGACCCCACACAAA
GTGCGACCAGTAAGTGAAAACATCAACAAAAACAAAACCTCAAGTTCTTTTTAGAAATGACTTT
AGGGACAAGCAGGAGGGAGGGAGGGGGGAGGGGCAAGGAGGGAGGAATGAAGGGCACGGAGAGG
AAGCCGTAGAGGCGGAGAGCATTGTAGATGGACAGACAGCCTCAGATTCCGAGGCACCGGGCGT
TGCTGTGGACATTCCGTCTGCCCCAGAGAAAAGAGGAGGGTAACTGAGAACTTTGCACTGATTT
CTCATGACCTTTTTTCTTTTGGAAAAGTGGCATGCTCCATAATATTAAAAAAAAATGTACATTT
GAAAGACTGAGTGATAAGTGATATATCATATTTATTATATGTTGTCCAAAAAAGAGTCACTTAT
ATACGTTAGTAAAACATGATTTTTCTTTTCATGTCTTTTTGATTCAGTAAAATAAATGCTTAGA
CAAAAATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038336376	(Get FASTA)	NCBI Sequence Viewer
	XP_038394839	(Get FASTA)	NCBI Sequence Viewer
	XP_038458967	(Get FASTA)	NCBI Sequence Viewer
	XP_038523670	(Get FASTA)	NCBI Sequence Viewer
	XP_853271	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029951.4
	ENSCAFP00030011575.1
	ENSCAFP00040011445.1
	ENSCAFP00845023654
	ENSCAFP00845023654.1

RefSeq Acc Id:

XP_853271 ⟸ XM_848178

- UniProtKB:

A0A8P0SP23 (UniProtKB/TrEMBL), A0A8C0QIL8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAPS
SPISVTMEPPEPHLVAEGPPHHHHLHHGQPPPPAAAPAQSLQPSPQQQPPPPPPPPPQQPPPQQ
PPPPPPAQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAAHESF
RPKLEQEDGKTKLDKREDAQSDLKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQ
LERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRM
FPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRVLIHGLGPRGQPALN
PLSNPIPGTPHPR

hide sequence

RefSeq Acc Id:

ENSCAFP00000029951 ⟸ ENSCAFT00000032163

RefSeq Acc Id:

XP_038336376 ⟸ XM_038480448

RefSeq Acc Id:

XP_038458967 ⟸ XM_038603039

RefSeq Acc Id:	XP_038523670 ⟸ XM_038667742
- UniProtKB:	A0A8C0MGZ6 (UniProtKB/TrEMBL), A0A8I3P354 (UniProtKB/TrEMBL), A0A8C0QIL8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038394839 ⟸ XM_038538911
- UniProtKB:	A0A8C0MGZ6 (UniProtKB/TrEMBL), A0A8C0QIL8 (UniProtKB/TrEMBL), A0A8I3P354 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845023654 ⟸ ENSCAFT00845030163

Protein Domains

Homeobox

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000020194	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030007216	UniProtKB/TrEMBL
	ENSCAFG00040007139	UniProtKB/TrEMBL
	ENSCAFG00845017033	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000032163.6	UniProtKB/TrEMBL
	ENSCAFT00030013244.1	UniProtKB/TrEMBL
	ENSCAFT00040013219.1	UniProtKB/TrEMBL
	ENSCAFT00845030163	ENTREZGENE
	ENSCAFT00845030163.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_metazoa	UniProtKB/TrEMBL
KEGG Report	cfa:611092	UniProtKB/TrEMBL
NCBI Gene	BARHL2	ENTREZGENE
PANTHER	BARH-LIKE 2 HOMEOBOX PROTEIN	UniProtKB/TrEMBL
	HOMEOBOX PROTEIN BARH-LIKE	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0MGZ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QIL8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P354	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SP23	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38381	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar