OTUD6A (OTU deubiquitinase 6A) - Rat Genome Database

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Gene: OTUD6A (OTU deubiquitinase 6A) Canis lupus familiaris
Analyze
Symbol: OTUD6A
Name: OTU deubiquitinase 6A
RGD ID: 12398211
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OTU domain containing 6A; OTU domain-containing protein 6A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X54,546,016 - 54,548,379 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX54,546,123 - 54,546,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX45,372,133 - 45,374,509 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X55,512,419 - 55,514,795 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX55,512,544 - 55,513,404 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X53,481,460 - 53,483,839 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X54,812,259 - 54,814,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X54,739,422 - 54,741,798 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OTUD6A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X54,546,016 - 54,548,379 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX54,546,123 - 54,546,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX45,372,133 - 45,374,509 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X55,512,419 - 55,514,795 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX55,512,544 - 55,513,404 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X53,481,460 - 53,483,839 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X54,812,259 - 54,814,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X54,739,422 - 54,741,798 (+)NCBIUU_Cfam_GSD_1.0
OTUD6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X70,062,457 - 70,064,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX70,062,457 - 70,064,179 (+)EnsemblGRCh38hg38GRCh38
GRCh37X69,282,307 - 69,284,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X69,199,066 - 69,200,754 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX69,635,707 - 69,637,395 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX63,103,165 - 63,104,853 (+)NCBIHuRef
CHM1_1X69,175,955 - 69,177,643 (+)NCBICHM1_1
T2T-CHM13v2.0X68,495,808 - 68,497,530 (+)NCBIT2T-CHM13v2.0
Otud6a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,472,514 - 99,474,859 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX99,472,619 - 99,473,491 (+)EnsemblGRCm39 Ensembl
GRCm38X100,428,908 - 100,429,885 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX100,429,013 - 100,429,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X97,624,352 - 97,625,224 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X96,631,732 - 96,632,604 (+)NCBIMGSCv36mm8
CeleraX87,354,623 - 87,355,359 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.72NCBI
Otud6a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X69,554,215 - 69,556,389 (+)NCBIGRCr8
mRatBN7.2X65,514,113 - 65,516,287 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX65,514,191 - 65,515,063 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX66,997,545 - 66,999,719 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X70,497,935 - 70,500,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,058,827 - 68,061,001 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,256,299 - 70,257,746 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,256,737 - 70,257,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X71,129,608 - 71,130,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X88,427,849 - 88,428,721 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX65,874,546 - 65,875,993 (+)NCBICelera
Cytogenetic MapXq22NCBI
Otud6a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554759,626,733 - 9,629,841 (+)NCBIChiLan1.0ChiLan1.0
OTUD6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X69,738,016 - 69,743,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X69,741,619 - 69,746,694 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X59,331,364 - 59,333,978 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X69,393,964 - 69,394,910 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX69,394,044 - 69,394,910 (+)Ensemblpanpan1.1panPan2
Otud6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X47,616,949 - 47,618,324 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367771,616,038 - 1,616,913 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTUD6A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX56,134,853 - 56,135,722 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X56,134,479 - 56,137,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X63,332,231 - 63,333,313 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OTUD6A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X59,889,957 - 59,893,168 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX59,890,630 - 59,891,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660651,753,324 - 1,754,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Otud6a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462490327,196 - 28,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OTUD6A
4 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 8
Below cutoff 2 2 8 2 7 2

Sequence


RefSeq Acc Id: ENSCAFT00000026526   ⟹   ENSCAFP00000024633
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX54,546,123 - 54,546,983 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051144   ⟹   ENSCAFP00845040103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX55,512,544 - 55,513,404 (+)Ensembl
RefSeq Acc Id: XM_038448974   ⟹   XP_038304902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X55,512,419 - 55,514,795 (+)NCBI
RefSeq Acc Id: XM_038524956   ⟹   XP_038380884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X53,481,460 - 53,483,839 (+)NCBI
RefSeq Acc Id: XM_038586525   ⟹   XP_038442453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X54,739,422 - 54,741,798 (+)NCBI
RefSeq Acc Id: XM_038650945   ⟹   XP_038506873
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X54,812,259 - 54,814,635 (+)NCBI
RefSeq Acc Id: XM_549057   ⟹   XP_549057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X54,546,016 - 54,548,379 (+)NCBI
Dog10K_Boxer_TashaX45,372,133 - 45,374,509 (+)NCBI
Sequence:
RefSeq Acc Id: XP_549057   ⟸   XM_549057
- UniProtKB: A0A8C0N235 (UniProtKB/TrEMBL),   A0A8I3Q224 (UniProtKB/TrEMBL),   A0A8C0L324 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000024633   ⟸   ENSCAFT00000026526
RefSeq Acc Id: XP_038380884   ⟸   XM_038524956
RefSeq Acc Id: XP_038506873   ⟸   XM_038650945
RefSeq Acc Id: XP_038304902   ⟸   XM_038448974
- UniProtKB: A0A8C0N235 (UniProtKB/TrEMBL),   A0A8I3Q224 (UniProtKB/TrEMBL),   A0A8C0L324 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442453   ⟸   XM_038586525
- UniProtKB: A0A8C0L324 (UniProtKB/TrEMBL),   A0A8C0N235 (UniProtKB/TrEMBL),   A0A8I3Q224 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845040103   ⟸   ENSCAFT00845051144
Protein Domains
OTU


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016754 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010756 UniProtKB/TrEMBL
  ENSCAFG00040022777 UniProtKB/TrEMBL
  ENSCAFG00845028946 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026526.3 UniProtKB/TrEMBL
  ENSCAFT00030019858.1 UniProtKB/TrEMBL
  ENSCAFT00040042315.1 UniProtKB/TrEMBL
  ENSCAFT00845051144 ENTREZGENE
  ENSCAFT00845051144.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.70.80 UniProtKB/TrEMBL
InterPro OTU_dom UniProtKB/TrEMBL
  OTU_OTUD6 UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
KEGG Report cfa:491937 UniProtKB/TrEMBL
NCBI Gene OTUD6A ENTREZGENE
PANTHER OTU DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  OTU DOMAIN-CONTAINING PROTEIN 6A UniProtKB/TrEMBL
Pfam OTU UniProtKB/TrEMBL
PROSITE OTU UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A8C0L324 ENTREZGENE
  A0A8C0N235 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q224 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44188 ENTREZGENE