ASF1B (anti-silencing function 1B histone chaperone) - Rat Genome Database

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Gene: ASF1B (anti-silencing function 1B histone chaperone) Canis lupus familiaris
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Symbol: ASF1B
Name: anti-silencing function 1B histone chaperone
RGD ID: 12397945
Description: ENCODES a protein that exhibits histone chaperone activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); nucleosome assembly (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); castration-resistant prostate carcinoma (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ASF1 anti-silencing function 1 homolog B; histone chaperone ASF1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,398,615 - 48,406,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,272,803 - 48,281,403 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,916,074 - 48,924,671 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,924,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,127,279 - 48,135,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,553,848 - 48,562,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,796,639 - 48,805,239 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ASF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,398,615 - 48,406,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,272,803 - 48,281,403 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,916,074 - 48,924,671 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,924,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,127,279 - 48,135,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,553,848 - 48,562,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,796,639 - 48,805,239 (+)NCBIUU_Cfam_GSD_1.0
ASF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,119,512 - 14,136,589 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,119,512 - 14,136,613 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,230,324 - 14,247,401 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,091,321 - 14,108,440 (-)NCBINCBI36Build 36hg18NCBI36
Build 341914,091,342 - 14,108,429NCBI
Celera1914,124,596 - 14,141,712 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1913,801,888 - 13,818,881 (-)NCBIHuRef
CHM1_11914,230,740 - 14,247,871 (-)NCBICHM1_1
T2T-CHM13v2.01914,246,124 - 14,263,201 (-)NCBIT2T-CHM13v2.0
Asf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,682,323 - 84,696,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,682,136 - 84,696,826 (+)EnsemblGRCm39 Ensembl
GRCm38883,955,694 - 83,970,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,955,507 - 83,970,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,479,593 - 86,494,094 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,845,799 - 86,860,300 (+)NCBIMGSCv36mm8
Celera888,249,392 - 88,263,700 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.22NCBI
Asf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,085,786 - 41,100,352 (-)NCBIGRCr8
mRatBN7.21924,181,024 - 24,195,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,181,028 - 24,195,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,002,160 - 31,016,725 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,656,566 - 31,671,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,879,281 - 33,893,844 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,077,918 - 25,092,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,077,918 - 25,092,491 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,055,967 - 36,070,506 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,867,384 - 25,881,909 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,872,530 - 25,887,149 (-)NCBI
Celera1923,729,321 - 23,743,692 (-)NCBICelera
Cytogenetic Map19q11NCBI
Asf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,817,547 - 32,828,651 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,818,592 - 32,828,651 (-)NCBIChiLan1.0ChiLan1.0
ASF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,051,940 - 19,069,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,053,309 - 18,071,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,685,617 - 13,702,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,411,127 - 14,428,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,411,127 - 14,428,917 (-)Ensemblpanpan1.1panPan2
Asf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,571,966 - 207,582,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,770,900 - 2,782,748 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,772,310 - 2,782,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,062,766 - 65,072,679 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,063,186 - 65,072,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,338,722 - 65,348,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,760,865 - 12,773,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660746,870,179 - 6,886,353 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,342,765 - 1,354,165 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,342,855 - 1,354,196 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ASF1B
38 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 8
Low 4 19 3 6 3 6 1 7 10 6
Below cutoff 5 3 3 3 5 5

Sequence


RefSeq Acc Id: ENSCAFT00845043410   ⟹   ENSCAFP00845034009
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,924,670 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043446   ⟹   ENSCAFP00845034037
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,923,694 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043471   ⟹   ENSCAFP00845034057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,923,206 (+)Ensembl
RefSeq Acc Id: XM_038428395   ⟹   XP_038284323
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02048,916,074 - 48,924,671 (+)NCBI
RefSeq Acc Id: XM_038504037   ⟹   XP_038359965
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12048,127,279 - 48,135,878 (+)NCBI
RefSeq Acc Id: XM_038567060   ⟹   XP_038422988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02048,796,639 - 48,805,239 (+)NCBI
RefSeq Acc Id: XM_038631205   ⟹   XP_038487133
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02048,553,848 - 48,562,442 (+)NCBI
RefSeq Acc Id: XM_542021   ⟹   XP_542021
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12048,398,615 - 48,406,889 (+)NCBI
Dog10K_Boxer_Tasha2048,272,803 - 48,281,403 (+)NCBI
Sequence:
RefSeq Acc Id: XP_542021   ⟸   XM_542021
- UniProtKB: A0A8C0K131 (UniProtKB/TrEMBL),   A0A8C0T344 (UniProtKB/TrEMBL),   A0A8I3S4S7 (UniProtKB/TrEMBL),   A0A8C0MR09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038359965   ⟸   XM_038504037
RefSeq Acc Id: XP_038487133   ⟸   XM_038631205
RefSeq Acc Id: XP_038284323   ⟸   XM_038428395
- UniProtKB: A0A8C0K131 (UniProtKB/TrEMBL),   A0A8C0T344 (UniProtKB/TrEMBL),   A0A8I3S4S7 (UniProtKB/TrEMBL),   A0A8C0MR09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422988   ⟸   XM_038567060
- UniProtKB: A0A8C0K131 (UniProtKB/TrEMBL),   A0A8C0MR09 (UniProtKB/TrEMBL),   A0A8C0T344 (UniProtKB/TrEMBL),   A0A8I3S4S7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845034037   ⟸   ENSCAFT00845043446
RefSeq Acc Id: ENSCAFP00845034009   ⟸   ENSCAFT00845043410
RefSeq Acc Id: ENSCAFP00845034057   ⟸   ENSCAFT00845043471


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016482 UniProtKB/TrEMBL
  ENSCAFG00000055123 UniProtKB/TrEMBL
  ENSCAFG00030008487 UniProtKB/TrEMBL
  ENSCAFG00030008584 UniProtKB/TrEMBL
  ENSCAFG00040018366 UniProtKB/TrEMBL
  ENSCAFG00040018751 UniProtKB/TrEMBL
  ENSCAFG00845023235 UniProtKB/TrEMBL
  ENSCAFG00845024582 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026119.5 UniProtKB/TrEMBL
  ENSCAFT00000086238.2 UniProtKB/TrEMBL
  ENSCAFT00000093942.2 UniProtKB/TrEMBL
  ENSCAFT00000099570.1 UniProtKB/TrEMBL
  ENSCAFT00030015563.1 UniProtKB/TrEMBL
  ENSCAFT00030015589.1 UniProtKB/TrEMBL
  ENSCAFT00030015850.1 UniProtKB/TrEMBL
  ENSCAFT00030015891.1 UniProtKB/TrEMBL
  ENSCAFT00030015925.1 UniProtKB/TrEMBL
  ENSCAFT00040033879.1 UniProtKB/TrEMBL
  ENSCAFT00040034823.1 UniProtKB/TrEMBL
  ENSCAFT00040034860.1 UniProtKB/TrEMBL
  ENSCAFT00040034920.1 UniProtKB/TrEMBL
  ENSCAFT00845041006.1 UniProtKB/TrEMBL
  ENSCAFT00845043410 ENTREZGENE
  ENSCAFT00845043410.1 UniProtKB/TrEMBL
  ENSCAFT00845043446.1 UniProtKB/TrEMBL
  ENSCAFT00845043471.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1490 UniProtKB/TrEMBL
InterPro ASF1-like UniProtKB/TrEMBL
  ASF1-like_sf UniProtKB/TrEMBL
KEGG Report cfa:484905 UniProtKB/TrEMBL
NCBI Gene ASF1B ENTREZGENE
PANTHER HISTONE CHAPERONE ASF1B UniProtKB/TrEMBL
  PTHR12040 UniProtKB/TrEMBL
Pfam ASF1_hist_chap UniProtKB/TrEMBL
Superfamily-SCOP SSF101546 UniProtKB/TrEMBL
UniProt A0A5F4CCH5_CANLF UniProtKB/TrEMBL
  A0A8C0K131 ENTREZGENE
  A0A8C0MR05_CANLF UniProtKB/TrEMBL
  A0A8C0MR09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MRT0_CANLF UniProtKB/TrEMBL
  A0A8C0T344 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S4S7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S4T5_CANLF UniProtKB/TrEMBL
  A0A8P0PCR8_CANLF UniProtKB/TrEMBL