ZNF331 (zinc finger protein 331) - Rat Genome Database

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Gene: ZNF331 (zinc finger protein 331) Canis lupus familiaris
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Symbol: ZNF331
Name: zinc finger protein 331
RGD ID: 12394442
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of gene expression (inferred); ASSOCIATED WITH Arsenic Poisoning (ortholog); genetic disease (ortholog); skin disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KRAB zinc finger protein
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,710,527 - 103,724,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,710,531 - 103,793,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,575,242 - 103,589,239 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1104,158,065 - 104,249,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,797,726 - 103,811,753 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,560,073 - 103,574,123 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,279,592 - 104,293,618 (-)NCBIUU_Cfam_GSD_1.0
Dog Cytomap1q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:15147412   PMID:30032202  


Genomics

Comparative Map Data
ZNF331
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,710,527 - 103,724,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,710,531 - 103,793,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,575,242 - 103,589,239 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1104,158,065 - 104,249,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,797,726 - 103,811,753 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,560,073 - 103,574,123 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,279,592 - 104,293,618 (-)NCBIUU_Cfam_GSD_1.0
Dog Cytomap1q33NCBI
ZNF331
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,503,235 - 53,580,269 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,519,527 - 53,580,269 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,024,268 - 54,083,523 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361958,715,989 - 58,775,335 (+)NCBINCBI36Build 36hg18NCBI36
Build 341958,716,089 - 58,775,335NCBI
Celera1951,065,602 - 51,124,916 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,344,398 - 50,403,248 (+)NCBIHuRef
CHM1_11954,026,017 - 54,085,277 (+)NCBICHM1_1
T2T-CHM13v2.01956,583,411 - 56,659,843 (+)NCBIT2T-CHM13v2.0
Znf331
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955604383,914 - 409,033 (-)NCBIChiLan1.0ChiLan1.0
ZNF331
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22059,537,095 - 59,595,364 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,457,951 - 61,517,581 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01950,465,659 - 50,524,594 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,315,619 - 59,374,805 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,315,619 - 59,374,805 (+)Ensemblpanpan1.1panPan2
Znf331
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093493,007,179 - 3,036,629 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493705567,982 - 74,103 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493705569,281 - 93,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF331
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,595,913 - 56,611,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,595,906 - 56,611,447 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF331
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,257,649 - 46,299,337 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,294,685 - 26,336,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf331
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,667,198 - 2,690,390 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,667,646 - 2,677,690 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF331
121 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 5 22 6 6 6 6 8 10 6
Medium 5 6 4 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000004362   ⟹   ENSCAFP00000004035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1103,710,531 - 103,724,523 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000044055   ⟹   ENSCAFP00000040347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1103,710,531 - 103,793,736 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845007750   ⟹   ENSCAFP00845006137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1104,158,065 - 104,249,934 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845007753   ⟹   ENSCAFP00845006139
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1104,158,065 - 104,180,235 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845007761   ⟹   ENSCAFP00845006145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1104,166,783 - 104,180,289 (-)Ensembl
RefSeq Acc Id: NM_001003331   ⟹   NP_001003331
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11103,710,530 - 103,724,523 (-)NCBI
Dog10K_Boxer_Tasha1103,575,242 - 103,589,239 (-)NCBI
ROS_Cfam_1.01104,166,228 - 104,180,263 (-)NCBI
UMICH_Zoey_3.11103,797,726 - 103,811,753 (-)NCBI
UNSW_CanFamBas_1.01103,560,073 - 103,574,123 (-)NCBI
UU_Cfam_GSD_1.01104,279,592 - 104,293,618 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038653434   ⟹   XP_038509362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBI
RefSeq Acc Id: XM_038653435   ⟹   XP_038509363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBI
RefSeq Acc Id: XM_038653436   ⟹   XP_038509364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBI
RefSeq Acc Id: XM_038653437   ⟹   XP_038509365
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBI
RefSeq Acc Id: XM_038653438   ⟹   XP_038509366
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBI
RefSeq Acc Id: NP_001003331   ⟸   NM_001003331
- UniProtKB: Q6JLC9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSCAFP00000004035   ⟸   ENSCAFT00000004362
RefSeq Acc Id: ENSCAFP00000040347   ⟸   ENSCAFT00000044055
RefSeq Acc Id: XP_038509366   ⟸   XM_038653438
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KZ83 (UniProtKB/TrEMBL),   A0A8C0PNK6 (UniProtKB/TrEMBL),   A0A8I3MPU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509365   ⟸   XM_038653437
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KZ83 (UniProtKB/TrEMBL),   A0A8C0PNK6 (UniProtKB/TrEMBL),   A0A8I3MPU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509362   ⟸   XM_038653434
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KZ83 (UniProtKB/TrEMBL),   A0A8C0PNK6 (UniProtKB/TrEMBL),   A0A8I3MPU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509364   ⟸   XM_038653436
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KZ83 (UniProtKB/TrEMBL),   A0A8C0PNK6 (UniProtKB/TrEMBL),   A0A8I3MPU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509363   ⟸   XM_038653435
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KZ83 (UniProtKB/TrEMBL),   A0A8C0PNK6 (UniProtKB/TrEMBL),   A0A8I3MPU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845006139   ⟸   ENSCAFT00845007753
RefSeq Acc Id: ENSCAFP00845006145   ⟸   ENSCAFT00845007761
RefSeq Acc Id: ENSCAFP00845006137   ⟸   ENSCAFT00845007750
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:13682161
Promoter ID:EPDNEW_C230
Type:multiple initiation site
Name:ZNF331_1
Description:zinc finger protein 331
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11103,724,530 - 103,724,590EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002745 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001085 UniProtKB/TrEMBL
  ENSCAFG00040001062 UniProtKB/TrEMBL
  ENSCAFG00845004301 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004362.4 UniProtKB/TrEMBL
  ENSCAFT00000044055.4 UniProtKB/TrEMBL
  ENSCAFT00030001866.1 UniProtKB/TrEMBL
  ENSCAFT00030001885.1 UniProtKB/TrEMBL
  ENSCAFT00040001972.1 UniProtKB/TrEMBL
  ENSCAFT00040001977.1 UniProtKB/TrEMBL
  ENSCAFT00845007750.1 UniProtKB/TrEMBL
  ENSCAFT00845007753 ENTREZGENE
  ENSCAFT00845007753.1 UniProtKB/TrEMBL
  ENSCAFT00845007761.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:414288 UniProtKB/Swiss-Prot
NCBI Gene ZNF331 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 345-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 711 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0KZ83 ENTREZGENE
  A0A8C0PNK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q088_CANLF UniProtKB/TrEMBL
  A0A8I3MKM5_CANLF UniProtKB/TrEMBL
  A0A8I3MPU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MW66_CANLF UniProtKB/TrEMBL
  A0A8P0N5R1_CANLF UniProtKB/TrEMBL
  A0A8P0NRL1_CANLF UniProtKB/TrEMBL
  Q6JLC9 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:48701 ENTREZGENE