CNIH2 (cornichon family AMPA receptor auxiliary protein 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CNIH2 (cornichon family AMPA receptor auxiliary protein 2) Canis lupus familiaris
Analyze
Symbol: CNIH2
Name: cornichon family AMPA receptor auxiliary protein 2
RGD ID: 12393239
Description: INVOLVED IN negative regulation of anterograde synaptic vesicle transport (ortholog); negative regulation of receptor localization to synapse (ortholog); regulation of NMDA receptor activity (ortholog); ASSOCIATED WITH autosomal recessive cutis laxa type IB (ortholog); familial temporal lobe epilepsy 8 (ortholog); intellectual disability (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); dendrite (ortholog); dendritic shaft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cornichon homolog 2; protein cornichon homolog 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,020,263 - 51,026,280 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,021,116 - 51,026,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,628,921 - 49,634,836 (-)NCBI
ROS_Cfam_1.01852,058,624 - 52,064,534 (-)NCBI
UMICH_Zoey_3.11851,158,624 - 51,164,533 (-)NCBI
UNSW_CanFamBas_1.01850,732,786 - 50,738,700 (-)NCBI
UU_Cfam_GSD_1.01851,522,930 - 51,528,840 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CNIH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,020,263 - 51,026,280 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,021,116 - 51,026,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,628,921 - 49,634,836 (-)NCBI
ROS_Cfam_1.01852,058,624 - 52,064,534 (-)NCBI
UMICH_Zoey_3.11851,158,624 - 51,164,533 (-)NCBI
UNSW_CanFamBas_1.01850,732,786 - 50,738,700 (-)NCBI
UU_Cfam_GSD_1.01851,522,930 - 51,528,840 (-)NCBI
CNIH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1166,278,175 - 66,285,301 (+)EnsemblGRCh38hg38GRCh38
GRCh381166,278,175 - 66,284,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371166,045,646 - 66,051,677 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,802,272 - 65,808,259 (+)NCBINCBI36hg18NCBI36
Build 341165,802,271 - 65,808,259NCBI
Celera1163,367,976 - 63,371,496 (+)NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,361,871 - 62,376,861 (+)NCBIHuRef
CHM1_11165,929,773 - 65,935,793 (+)NCBICHM1_1
Cnih2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,142,896 - 5,148,549 (-)NCBIGRCm39mm39
GRCm39 Ensembl195,142,896 - 5,148,549 (-)Ensembl
GRCm38195,092,868 - 5,098,521 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,092,868 - 5,098,521 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,092,871 - 5,098,418 (-)NCBIGRCm37mm9NCBIm37
MGSCv36195,092,871 - 5,098,418 (-)NCBImm8
Celera194,962,069 - 4,967,624 (-)NCBICelera
Cytogenetic Map19ANCBI
Cnih2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,399,416 - 202,405,110 (-)NCBI
Rnor_6.0 Ensembl1220,474,493 - 220,480,132 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01220,474,485 - 220,480,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,405,539 - 227,411,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,715,692 - 207,717,588 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11207,869,147 - 207,871,037 (-)NCBI
Celera1199,939,495 - 199,944,513 (-)NCBICelera
Cytogenetic Map1q43NCBI
Cnih2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,033,201 - 19,035,138 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,033,201 - 19,035,135 (-)NCBIChiLan1.0ChiLan1.0
CNIH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11164,969,447 - 64,975,156 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,969,447 - 64,975,156 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01161,643,633 - 61,649,646 (+)NCBIMhudiblu_PPA_v0panPan3
Cnih2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,868,527 - 6,874,251 (-)NCBI
SpeTri2.0NW_0049365993,310,873 - 3,316,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNIH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.126,102,347 - 6,109,424 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,178,633 - 5,184,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNIH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,982,685 - 7,988,834 (-)NCBI
ChlSab1.1 Ensembl17,982,700 - 7,988,753 (-)Ensembl
Vero_WHO_p1.0NW_023666038105,264,377 - 105,270,384 (-)NCBI
Cnih2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,084,526 - 20,090,225 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 7 12 8
Low 1 8 1 2 5
Below cutoff 4 3 7 6 5 6 4 6 5 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000020357   ⟹   ENSCAFP00000018889
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1851,021,116 - 51,026,273 (-)Ensembl
RefSeq Acc Id: XM_003432317   ⟹   XP_003432365
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,020,263 - 51,026,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038424909   ⟹   XP_038280837
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01852,058,624 - 52,064,534 (-)NCBI
RefSeq Acc Id: XM_038454230   ⟹   XP_038310158
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1849,628,921 - 49,634,836 (-)NCBI
RefSeq Acc Id: XM_038501147   ⟹   XP_038357075
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11851,158,624 - 51,164,533 (-)NCBI
RefSeq Acc Id: XM_038563848   ⟹   XP_038419776
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,522,930 - 51,528,840 (-)NCBI
RefSeq Acc Id: XM_038627972   ⟹   XP_038483900
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01850,732,786 - 50,738,700 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003432365   ⟸   XM_003432317
- Sequence:
RefSeq Acc Id: ENSCAFP00000018889   ⟸   ENSCAFT00000020357
RefSeq Acc Id: XP_038357075   ⟸   XM_038501147
RefSeq Acc Id: XP_038483900   ⟸   XM_038627972
RefSeq Acc Id: XP_038280837   ⟸   XM_038424909
RefSeq Acc Id: XP_038310158   ⟸   XM_038454230
RefSeq Acc Id: XP_038419776   ⟸   XM_038563848


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012831 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000018889 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020357 UniProtKB/TrEMBL
InterPro Cornichon UniProtKB/TrEMBL
  Cornichon_conserved UniProtKB/TrEMBL
NCBI Gene CNIH2 ENTREZGENE
Pfam Cornichon UniProtKB/TrEMBL
PROSITE CORNICHON UniProtKB/TrEMBL
SMART Cornichon UniProtKB/TrEMBL
UniProt E2RFF2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39400 ENTREZGENE