LRR1 (leucine rich repeat protein 1) - Rat Genome Database

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Gene: LRR1 (leucine rich repeat protein 1) Canis lupus familiaris
Analyze
Symbol: LRR1
Name: leucine rich repeat protein 1
RGD ID: 12386988
Description: INVOLVED IN signal transduction (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); primary ciliary dyskinesia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat protein 1; peptidylprolyl isomerase (cyclophilin)-like 5; peptidylprolyl isomerase-like 5; PPIL5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,229,293 - 26,241,617 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,229,018 - 26,240,716 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,983,543 - 25,995,818 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,407,620 - 26,419,912 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,407,913 - 26,419,785 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,063,012 - 26,075,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,136,640 - 26,148,911 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,453,770 - 26,466,044 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LRR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,229,293 - 26,241,617 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,229,018 - 26,240,716 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,983,543 - 25,995,818 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,407,620 - 26,419,912 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,407,913 - 26,419,785 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,063,012 - 26,075,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,136,640 - 26,148,911 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,453,770 - 26,466,044 (+)NCBIUU_Cfam_GSD_1.0
LRR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,598,940 - 49,614,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,598,761 - 49,614,672 (+)EnsemblGRCh38hg38GRCh38
GRCh371450,065,658 - 50,081,390 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,135,165 - 49,151,140 (+)NCBINCBI36Build 36hg18NCBI36
Build 341449,135,164 - 49,151,139NCBI
Celera1429,925,243 - 29,941,208 (+)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,182,561 - 30,198,518 (+)NCBIHuRef
CHM1_11450,004,416 - 50,020,377 (+)NCBICHM1_1
T2T-CHM13v2.01443,797,191 - 43,812,899 (+)NCBIT2T-CHM13v2.0
Lrr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,215,588 - 69,225,786 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,215,588 - 69,225,783 (+)EnsemblGRCm39 Ensembl
GRCm381269,168,814 - 69,179,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,168,814 - 69,179,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,269,801 - 70,279,997 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,087,419 - 70,097,615 (+)NCBIMGSCv36mm8
Celera1270,260,630 - 70,270,884 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Lrr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,379,159 - 93,387,950 (+)NCBIGRCr8
mRatBN7.2687,643,195 - 87,651,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,643,217 - 87,651,894 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,043,098 - 88,051,779 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,342,532 - 88,351,214 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,782,281 - 87,790,965 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,463,205 - 91,472,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,463,308 - 91,472,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,922,215 - 100,931,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,124,122 - 91,132,796 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera686,142,464 - 86,151,121 (+)NCBICelera
Cytogenetic Map6q24NCBI
Lrr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540913,039,029 - 13,048,038 (-)NCBIChiLan1.0ChiLan1.0
LRR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,722,865 - 50,739,181 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,939,660 - 49,955,686 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,176,924 - 30,192,847 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,486,558 - 48,502,794 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,486,914 - 48,502,794 (+)Ensemblpanpan1.1panPan2
Lrr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,272,420 - 58,281,847 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936583407,481 - 416,239 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936583407,360 - 416,226 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,462,247 - 179,475,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,461,399 - 179,475,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,847,861 - 199,859,687 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,643,136 - 26,654,471 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,643,486 - 26,657,364 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,957,805 - 14,970,808 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,090,334 - 19,101,254 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473119,091,909 - 19,101,691 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LRR1
166 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 5 4 22 6 6 6 6 12 10 6
Below cutoff 1 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005623372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022421975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022421976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022421977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038483196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038483197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038483198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038483199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038483200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038483201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038544652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038608776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038673556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_547798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_858184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000022500   ⟹   ENSCAFP00000020889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl826,229,018 - 26,240,223 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000043946   ⟹   ENSCAFP00000041750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl826,229,018 - 26,240,716 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845003944   ⟹   ENSCAFP00845003145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl826,407,913 - 26,419,785 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845003948   ⟹   ENSCAFP00845003149
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl826,407,913 - 26,418,433 (+)Ensembl
RefSeq Acc Id: XM_005623372   ⟹   XP_005623429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,709 - 26,241,617 (+)NCBI
Dog10K_Boxer_Tasha825,983,907 - 25,995,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022421975   ⟹   XP_022277683
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,561 - 26,241,617 (+)NCBI
Dog10K_Boxer_Tasha825,983,764 - 25,995,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022421976   ⟹   XP_022277684
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,714 - 26,241,617 (+)NCBI
Dog10K_Boxer_Tasha825,983,936 - 25,995,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022421977   ⟹   XP_022277685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,500 - 26,241,617 (+)NCBI
Dog10K_Boxer_Tasha825,983,657 - 25,995,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038483196   ⟹   XP_038339124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,063,151 - 26,075,286 (+)NCBI
RefSeq Acc Id: XM_038483197   ⟹   XP_038339125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,063,376 - 26,075,286 (+)NCBI
RefSeq Acc Id: XM_038483198   ⟹   XP_038339126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,063,233 - 26,075,286 (+)NCBI
RefSeq Acc Id: XM_038483199   ⟹   XP_038339127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,063,405 - 26,075,286 (+)NCBI
RefSeq Acc Id: XM_038483200   ⟹   XP_038339128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,063,126 - 26,075,286 (+)NCBI
RefSeq Acc Id: XM_038483201   ⟹   XP_038339129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,063,012 - 26,073,809 (+)NCBI
RefSeq Acc Id: XM_038544647   ⟹   XP_038400575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,453,909 - 26,466,044 (+)NCBI
RefSeq Acc Id: XM_038544648   ⟹   XP_038400576
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,454,134 - 26,466,044 (+)NCBI
RefSeq Acc Id: XM_038544649   ⟹   XP_038400577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,453,991 - 26,466,044 (+)NCBI
RefSeq Acc Id: XM_038544650   ⟹   XP_038400578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,454,163 - 26,466,044 (+)NCBI
RefSeq Acc Id: XM_038544651   ⟹   XP_038400579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,453,884 - 26,466,044 (+)NCBI
RefSeq Acc Id: XM_038544652   ⟹   XP_038400580
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,453,770 - 26,464,567 (+)NCBI
RefSeq Acc Id: XM_038608771   ⟹   XP_038464699
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,136,779 - 26,148,911 (+)NCBI
RefSeq Acc Id: XM_038608772   ⟹   XP_038464700
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,137,004 - 26,148,911 (+)NCBI
RefSeq Acc Id: XM_038608773   ⟹   XP_038464701
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,136,861 - 26,148,911 (+)NCBI
RefSeq Acc Id: XM_038608774   ⟹   XP_038464702
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,137,033 - 26,148,911 (+)NCBI
RefSeq Acc Id: XM_038608775   ⟹   XP_038464703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,136,754 - 26,148,911 (+)NCBI
RefSeq Acc Id: XM_038608776   ⟹   XP_038464704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,136,640 - 26,147,434 (+)NCBI
RefSeq Acc Id: XM_038673551   ⟹   XP_038529479
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,407,759 - 26,419,912 (+)NCBI
RefSeq Acc Id: XM_038673552   ⟹   XP_038529480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,407,984 - 26,419,912 (+)NCBI
RefSeq Acc Id: XM_038673553   ⟹   XP_038529481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,407,841 - 26,419,912 (+)NCBI
RefSeq Acc Id: XM_038673554   ⟹   XP_038529482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,408,013 - 26,419,912 (+)NCBI
RefSeq Acc Id: XM_038673555   ⟹   XP_038529483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,407,734 - 26,419,912 (+)NCBI
RefSeq Acc Id: XM_038673556   ⟹   XP_038529484
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,407,620 - 26,418,433 (+)NCBI
RefSeq Acc Id: XM_547798   ⟹   XP_547798
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,506 - 26,241,617 (+)NCBI
Dog10K_Boxer_Tasha825,983,682 - 25,995,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_858184   ⟹   XP_863277
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,293 - 26,240,141 (+)NCBI
Dog10K_Boxer_Tasha825,983,543 - 25,994,342 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005623429 (Get FASTA)   NCBI Sequence Viewer  
  XP_022277683 (Get FASTA)   NCBI Sequence Viewer  
  XP_022277684 (Get FASTA)   NCBI Sequence Viewer  
  XP_022277685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038339124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038339125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038339126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038339127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038339128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038339129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038400575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038400576 (Get FASTA)   NCBI Sequence Viewer  
  XP_038400577 (Get FASTA)   NCBI Sequence Viewer  
  XP_038400578 (Get FASTA)   NCBI Sequence Viewer  
  XP_038400579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038400580 (Get FASTA)   NCBI Sequence Viewer  
  XP_038464699 (Get FASTA)   NCBI Sequence Viewer  
  XP_038464700 (Get FASTA)   NCBI Sequence Viewer  
  XP_038464701 (Get FASTA)   NCBI Sequence Viewer  
  XP_038464702 (Get FASTA)   NCBI Sequence Viewer  
  XP_038464703 (Get FASTA)   NCBI Sequence Viewer  
  XP_038464704 (Get FASTA)   NCBI Sequence Viewer  
  XP_038529479 (Get FASTA)   NCBI Sequence Viewer  
  XP_038529480 (Get FASTA)   NCBI Sequence Viewer  
  XP_038529481 (Get FASTA)   NCBI Sequence Viewer  
  XP_038529482 (Get FASTA)   NCBI Sequence Viewer  
  XP_038529483 (Get FASTA)   NCBI Sequence Viewer  
  XP_038529484 (Get FASTA)   NCBI Sequence Viewer  
  XP_547798 (Get FASTA)   NCBI Sequence Viewer  
  XP_863277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000041750.3
  ENSCAFP00000071220.1
  ENSCAFP00030000918.1
  ENSCAFP00040004102.1
  ENSCAFP00845003145
  ENSCAFP00845003145.1
  ENSCAFP00845003149
  ENSCAFP00845003149.1
RefSeq Acc Id: XP_547798   ⟸   XM_547798
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LXF9 (UniProtKB/TrEMBL),   A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_863277   ⟸   XM_858184
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LBN6 (UniProtKB/TrEMBL),   A0A8I3MNX5 (UniProtKB/TrEMBL),   A0A8P0PLL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005623429   ⟸   XM_005623372
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277685   ⟸   XM_022421977
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L8U2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277683   ⟸   XM_022421975
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277684   ⟸   XM_022421976
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000041750   ⟸   ENSCAFT00000043946
RefSeq Acc Id: ENSCAFP00000020889   ⟸   ENSCAFT00000022500
RefSeq Acc Id: XP_038339129   ⟸   XM_038483201
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038339128   ⟸   XM_038483200
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038339124   ⟸   XM_038483196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038339126   ⟸   XM_038483198
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038339125   ⟸   XM_038483197
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038339127   ⟸   XM_038483199
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038464704   ⟸   XM_038608776
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038464703   ⟸   XM_038608775
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038464699   ⟸   XM_038608771
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038464701   ⟸   XM_038608773
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038464700   ⟸   XM_038608772
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038464702   ⟸   XM_038608774
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038529484   ⟸   XM_038673556
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LBN6 (UniProtKB/TrEMBL),   A0A8I3MNX5 (UniProtKB/TrEMBL),   A0A8P0PLL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038529483   ⟸   XM_038673555
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L8U2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038529479   ⟸   XM_038673551
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LXF9 (UniProtKB/TrEMBL),   A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038529481   ⟸   XM_038673553
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038529480   ⟸   XM_038673552
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038529482   ⟸   XM_038673554
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400580   ⟸   XM_038544652
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LBN6 (UniProtKB/TrEMBL),   A0A8I3MNX5 (UniProtKB/TrEMBL),   A0A8P0PLL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400579   ⟸   XM_038544651
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L8U2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400575   ⟸   XM_038544647
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LXF9 (UniProtKB/TrEMBL),   A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400577   ⟸   XM_038544649
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400576   ⟸   XM_038544648
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400578   ⟸   XM_038544650
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MMG7 (UniProtKB/TrEMBL),   A0A8P0NSQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845003149   ⟸   ENSCAFT00845003948
RefSeq Acc Id: ENSCAFP00845003145   ⟸   ENSCAFT00845003944

Promoters
RGD ID:13684192
Promoter ID:EPDNEW_C2260
Type:single initiation site
Name:LRR1_1
Description:leucine rich repeat protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,229,580 - 26,229,640EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014177 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000642 UniProtKB/TrEMBL
  ENSCAFG00040002507 UniProtKB/TrEMBL
  ENSCAFG00845002248 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000043946.4 UniProtKB/TrEMBL
  ENSCAFT00000107326.1 UniProtKB/TrEMBL
  ENSCAFT00030001058.1 UniProtKB/TrEMBL
  ENSCAFT00040004782.1 UniProtKB/TrEMBL
  ENSCAFT00845003944 ENTREZGENE
  ENSCAFT00845003944.1 UniProtKB/TrEMBL
  ENSCAFT00845003948 ENTREZGENE
  ENSCAFT00845003948.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene LRR1 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT PROTEIN 1 UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING UniProtKB/TrEMBL
Pfam LRR_4 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C0L8U2 ENTREZGENE
  A0A8C0LBN6 ENTREZGENE
  A0A8C0LXF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MMG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MNX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NSQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PLL8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42782 ENTREZGENE