VAMP3 (vesicle associated membrane protein 3) - Rat Genome Database

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Gene: VAMP3 (vesicle associated membrane protein 3) Canis lupus familiaris
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Symbol: VAMP3
Name: vesicle associated membrane protein 3
RGD ID: 12385880
Description: ENCODES a protein that exhibits SNARE binding (ortholog); syntaxin-1 binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); cellular response to interferon-gamma (ortholog); Golgi to plasma membrane protein transport (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); clathrin-coated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vesicle-associated membrane protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,430,711 - 61,440,626 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,430,740 - 61,439,063 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha561,439,454 - 61,449,379 (+)NCBI
ROS_Cfam_1.0561,647,556 - 61,657,492 (+)NCBI
UMICH_Zoey_3.1561,646,808 - 61,656,746 (+)NCBI
UNSW_CanFamBas_1.0561,511,261 - 61,521,200 (+)NCBI
UU_Cfam_GSD_1.0561,914,945 - 61,924,879 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
VAMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,430,711 - 61,440,626 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,430,740 - 61,439,063 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha561,439,454 - 61,449,379 (+)NCBI
ROS_Cfam_1.0561,647,556 - 61,657,492 (+)NCBI
UMICH_Zoey_3.1561,646,808 - 61,656,746 (+)NCBI
UNSW_CanFamBas_1.0561,511,261 - 61,521,200 (+)NCBI
UU_Cfam_GSD_1.0561,914,945 - 61,924,879 (+)NCBI
VAMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl17,771,296 - 7,781,432 (+)EnsemblGRCh38hg38GRCh38
GRCh3817,771,275 - 7,781,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3717,831,356 - 7,841,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3617,753,916 - 7,764,079 (+)NCBINCBI36hg18NCBI36
Build 3417,765,594 - 7,775,757NCBI
Celera16,939,057 - 6,949,218 (+)NCBI
Cytogenetic Map1p36.23NCBI
HuRef16,979,774 - 6,989,939 (+)NCBIHuRef
CHM1_117,819,031 - 7,829,192 (+)NCBICHM1_1
Vamp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394151,131,762 - 151,142,410 (-)NCBIGRCm39mm39
GRCm39 Ensembl4151,131,757 - 151,142,420 (-)Ensembl
GRCm384151,047,305 - 151,057,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4151,047,300 - 151,057,963 (-)EnsemblGRCm38mm10GRCm38
MGSCv374150,421,414 - 150,432,062 (-)NCBIGRCm37mm9NCBIm37
MGSCv364149,891,105 - 149,901,753 (-)NCBImm8
Celera4153,323,081 - 153,333,830 (-)NCBICelera
Cytogenetic Map4E2NCBI
Vamp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25161,498,109 - 161,508,704 (-)NCBI
Rnor_6.0 Ensembl5168,126,157 - 168,136,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05168,126,157 - 168,136,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05171,703,252 - 171,713,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,190,569 - 168,201,165 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15168,200,756 - 168,386,085 (-)NCBI
Celera5159,750,283 - 159,760,878 (-)NCBICelera
Cytogenetic Map5q36NCBI
Vamp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554865,103,106 - 5,112,176 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554865,103,228 - 5,112,157 (-)NCBIChiLan1.0ChiLan1.0
VAMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.117,782,810 - 7,792,958 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v016,534,115 - 6,544,275 (+)NCBIMhudiblu_PPA_v0panPan3
Vamp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505831,793,913 - 31,802,660 (+)NCBI
SpeTri2.0NW_0049366232,280,534 - 2,287,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1668,473,921 - 68,482,438 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VAMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120123,973,672 - 123,984,230 (-)NCBI
ChlSab1.1 Ensembl20123,971,992 - 123,984,187 (-)Ensembl
Vero_WHO_p1.0NW_02366605428,008,620 - 28,019,197 (-)NCBI
Vamp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248184,010,130 - 4,019,695 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000044350   ⟹   ENSCAFP00000039533
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl561,430,740 - 61,439,063 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089069   ⟹   ENSCAFP00000064107
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl561,430,740 - 61,437,872 (+)Ensembl
RefSeq Acc Id: XM_005620479   ⟹   XP_005620536
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1561,430,711 - 61,440,626 (+)NCBI
Dog10K_Boxer_Tasha561,439,454 - 61,449,379 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038476696   ⟹   XP_038332624
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1561,646,808 - 61,656,746 (+)NCBI
RefSeq Acc Id: XM_038537837   ⟹   XP_038393765
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0561,914,945 - 61,924,879 (+)NCBI
RefSeq Acc Id: XM_038601989   ⟹   XP_038457917
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0561,511,261 - 61,521,200 (+)NCBI
RefSeq Acc Id: XM_038666583   ⟹   XP_038522511
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0561,647,556 - 61,657,492 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005620536   ⟸   XM_005620479
- UniProtKB: J9P1V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000039533   ⟸   ENSCAFT00000044350
RefSeq Acc Id: ENSCAFP00000064107   ⟸   ENSCAFT00000089069
RefSeq Acc Id: XP_038332624   ⟸   XM_038476696
RefSeq Acc Id: XP_038457917   ⟸   XM_038601989
RefSeq Acc Id: XP_038522511   ⟸   XM_038666583
RefSeq Acc Id: XP_038393765   ⟸   XM_038537837
Promoters
RGD ID:13683373
Promoter ID:EPDNEW_C1439
Type:initiation region
Name:VAMP3_1
Description:vesicle associated membrane protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1561,430,741 - 61,430,801EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031447 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000039533 ENTREZGENE
NCBI Gene VAMP3 ENTREZGENE
UniProt J9P1V7 ENTREZGENE
VGNC ID VGNC:48223 ENTREZGENE