PPARGC1A (PPARG coactivator 1 alpha) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PPARGC1A (PPARG coactivator 1 alpha) Canis lupus familiaris
Analyze
Symbol: PPARGC1A
Name: PPARG coactivator 1 alpha
RGD ID: 12385531
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); adipose tissue development (ortholog); aging (ortholog); PARTICIPATES IN aldosterone signaling pathway; mTOR signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney failure (ortholog); Albuminuria (ortholog); FOUND IN apical dendrite (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: peroxisome proliferator-activated receptor gamma coactivator 1-alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,645,942 - 86,284,570 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl386,016,140 - 86,281,269 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha388,158,508 - 88,796,824 (+)NCBI
ROS_Cfam_1.0386,620,570 - 87,261,415 (+)NCBI
UMICH_Zoey_3.1385,752,591 - 86,391,823 (+)NCBI
UNSW_CanFamBas_1.0385,858,991 - 86,497,911 (+)NCBI
UU_Cfam_GSD_1.0386,243,892 - 86,883,362 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abdominal obesity-metabolic syndrome  (ISO)
acute kidney failure  (ISO)
Albuminuria  (ISO)
Alzheimer's disease  (ISO)
amblyopia  (ISO)
amyotrophic lateral sclerosis  (ISO)
Bowen's Disease  (ISO)
Brain Injuries  (ISO)
Cardiomegaly  (ISO)
cardiovascular system disease  (ISO)
Carotid Artery Injuries  (ISO)
chronic kidney disease  (ISO)
chronic obstructive pulmonary disease  (ISO)
colitis  (ISO)
congenital hypothyroidism  (ISO)
congestive heart failure  (ISO)
Diabetic Nephropathies  (ISO)
diabetic retinopathy  (ISO)
dilated cardiomyopathy  (ISO)
Diseases of the Aged  (ISO)
Experimental Diabetes Mellitus  (ISO)
fatty liver disease  (ISO)
Fetal Growth Retardation  (ISO)
glucose intolerance  (ISO)
heart disease  (ISO)
Huntington's disease  (ISO)
hyperglycemia  (ISO)
hyperthyroidism  (ISO)
Insulin Resistance  (ISO)
Kearns-Sayre syndrome  (ISO)
kidney cancer  (ISO)
kidney failure  (ISO)
Kidney Reperfusion Injury  (ISO)
Left Ventricular Hypertrophy  (ISO)
Lewy body dementia  (ISO)
macular degeneration  (ISO)
malignant fibrous histiocytoma  (ISO)
melanoma  (ISO)
Metabolic Syndrome  (ISO)
Muscular Dystrophy, Animal  (ISO)
myocardial infarction  (ISO)
Myocardial Reperfusion Injury  (ISO)
nephrotic syndrome  (ISO)
neuronal ceroid lipofuscinosis 1  (ISO)
non-alcoholic fatty liver disease  (ISO)
obesity  (ISO)
Parkinson's disease  (ISO)
Parkinsonism  (ISO)
placental insufficiency  (ISO)
prediabetes syndrome  (ISO)
primary biliary cholangitis  (ISO)
pulmonary emphysema  (ISO)
renal fibrosis  (ISO)
Right Ventricular Hypertrophy  (ISO)
Sarcopenia  (ISO)
schizophrenia  (ISO)
sciatic neuropathy  (ISO)
Sepsis  (ISO)
Sleep Initiation and Maintenance Disorders  (ISO)
Spinal Cord Injuries  (ISO)
Takotsubo Cardiomyopathy  (ISO)
type 1 diabetes mellitus  (ISO)
type 2 diabetes mellitus  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adaptive thermogenesis  (ISO)
adipose tissue development  (ISO)
aging  (ISO)
androgen metabolic process  (ISO)
autophagy of mitochondrion  (ISO)
cellular response to caffeine  (ISO)
cellular response to estradiol stimulus  (ISO)
cellular response to fatty acid  (ISO)
cellular response to follicle-stimulating hormone stimulus  (ISO)
cellular response to fructose stimulus  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to hypoxia  (ISO)
cellular response to interleukin-6  (ISO)
cellular response to ionomycin  (ISO)
cellular response to lipopolysaccharide  (ISO)
cellular response to nitrite  (ISO)
cellular response to oxidative stress  (ISO,ISS)
cellular response to potassium ion  (ISO)
cellular response to resveratrol  (ISO)
cellular response to thyroid hormone stimulus  (ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
cerebellum development  (ISO)
circadian regulation of gene expression  (ISO)
energy homeostasis  (ISS)
fatty acid oxidation  (ISO)
flavone metabolic process  (ISO)
forebrain development  (ISO)
galactose metabolic process  (ISO)
gluconeogenesis  (ISO)
mitochondrion organization  (IEA,ISO)
negative regulation of glycolytic process  (ISO)
negative regulation of mitochondrial fission  (ISO)
negative regulation of neuron apoptotic process  (ISO,ISS)
negative regulation of neuron death  (ISO)
negative regulation of protein phosphorylation  (ISO)
negative regulation of signaling receptor activity  (ISO)
negative regulation of smooth muscle cell migration  (ISO)
negative regulation of smooth muscle cell proliferation  (ISO)
positive regulation of ATP biosynthetic process  (ISS)
positive regulation of cellular metabolic process  (ISO)
positive regulation of cellular respiration  (ISO)
positive regulation of cold-induced thermogenesis  (ISO)
positive regulation of DNA-binding transcription factor activity  (IBA,ISS)
positive regulation of fatty acid oxidation  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of glomerular visceral epithelial cell apoptotic process  (ISO)
positive regulation of mitochondrial DNA metabolic process  (ISO)
positive regulation of mitochondrion organization  (ISS)
positive regulation of muscle tissue development  (ISO)
positive regulation of progesterone biosynthetic process  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,ISO,ISS)
positive regulation of transcription, DNA-templated  (ISO,ISS)
regulation of circadian rhythm  (ISO)
regulation of NMDA receptor activity  (ISO)
regulation of transcription, DNA-templated  (ISO)
respiratory electron transport chain  (ISO,ISS)
response to activity  (ISO)
response to cold  (ISO)
response to dietary excess  (ISO)
response to electrical stimulus  (ISO)
response to electrical stimulus involved in regulation of muscle adaptation  (ISO)
response to epinephrine  (ISO)
response to fructose  (ISO)
response to hypoxia  (ISO)
response to ischemia  (ISO)
response to leucine  (ISO)
response to metformin  (ISO)
response to methionine  (ISO)
response to muscle activity  (ISO,ISS)
response to norepinephrine  (ISO)
response to nutrient levels  (ISO)
response to organic cyclic compound  (ISO)
response to reactive oxygen species  (ISO)
response to starvation  (ISO)
response to thyroid hormone  (ISO)
response to xenobiotic stimulus  (ISO)
rhythmic process  (IEA)
skeletal muscle atrophy  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PPARGC1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,645,942 - 86,284,570 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl386,016,140 - 86,281,269 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha388,158,508 - 88,796,824 (+)NCBI
ROS_Cfam_1.0386,620,570 - 87,261,415 (+)NCBI
UMICH_Zoey_3.1385,752,591 - 86,391,823 (+)NCBI
UNSW_CanFamBas_1.0385,858,991 - 86,497,911 (+)NCBI
UU_Cfam_GSD_1.0386,243,892 - 86,883,362 (+)NCBI
PPARGC1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl423,755,041 - 23,904,089 (-)EnsemblGRCh38hg38GRCh38
GRCh38423,792,021 - 24,472,905 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37423,793,644 - 24,474,528 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36423,402,742 - 23,500,798 (-)NCBINCBI36hg18NCBI36
Build 34423,469,913 - 23,567,969NCBI
Celera424,243,466 - 24,341,439 (-)NCBI
Cytogenetic Map4p15.2NCBI
HuRef423,138,364 - 23,236,560 (-)NCBIHuRef
CHM1_1423,791,582 - 23,889,913 (-)NCBICHM1_1
Ppargc1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39551,611,591 - 52,273,337 (-)NCBIGRCm39mm39
GRCm39 Ensembl551,611,592 - 51,725,068 (-)Ensembl
GRCm38551,454,249 - 52,115,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl551,454,250 - 51,567,726 (-)EnsemblGRCm38mm10GRCm38
MGSCv37551,845,488 - 51,945,160 (-)NCBIGRCm37mm9NCBIm37
MGSCv36551,745,901 - 51,842,109 (-)NCBImm8
Celera548,830,811 - 48,929,055 (-)NCBICelera
Cytogenetic Map5C1NCBI
Ppargc1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21458,860,752 - 59,516,525 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1463,095,720 - 63,187,009 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01463,095,291 - 63,190,688 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01463,182,479 - 63,286,252 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41464,278,115 - 64,370,912 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11464,280,505 - 64,373,303 (+)NCBI
Celera1458,516,257 - 58,607,916 (+)NCBICelera
Cytogenetic Map14q11NCBI
Ppargc1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554801,078,322 - 1,188,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955480543,397 - 1,188,376 (+)NCBIChiLan1.0ChiLan1.0
PPARGC1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1423,483,377 - 24,160,574 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl423,483,377 - 23,581,212 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0418,196,431 - 18,876,889 (-)NCBIMhudiblu_PPA_v0panPan3
Ppargc1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528551,179,331 - 51,786,516 (+)NCBI
SpeTri2.0NW_0049364774,881,230 - 5,488,208 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPARGC1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl817,841,844 - 17,961,909 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1817,841,844 - 18,527,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap8p2.1-p2.3NCBI
PPARGC1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12725,882,385 - 26,563,530 (+)NCBI
ChlSab1.1 Ensembl2726,465,499 - 26,564,582 (+)Ensembl
Vero_WHO_p1.0NW_02366604772,634,061 - 73,114,795 (+)NCBI
Ppargc1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247557,826,219 - 8,460,746 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 6 1 1 5 5
Low 5 14 5 5 6 7 8 5 6
Below cutoff 2 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005618656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038482198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000035962   ⟹   ENSCAFP00000031277
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,183,261 - 86,281,269 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000064436   ⟹   ENSCAFP00000059186
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,016,140 - 86,281,269 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000072675   ⟹   ENSCAFP00000062622
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,169,642 - 86,281,269 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077062   ⟹   ENSCAFP00000058356
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,183,261 - 86,256,006 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077957   ⟹   ENSCAFP00000050389
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,183,261 - 86,188,836 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086816   ⟹   ENSCAFP00000064881
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,169,604 - 86,281,269 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000088851   ⟹   ENSCAFP00000050517
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,127,169 - 86,281,269 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089485   ⟹   ENSCAFP00000043833
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,183,261 - 86,281,269 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000091352   ⟹   ENSCAFP00000055262
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl386,188,054 - 86,281,269 (+)Ensembl
RefSeq Acc Id: XM_005618656   ⟹   XP_005618713
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1386,169,606 - 86,284,570 (+)NCBI
Dog10K_Boxer_Tasha388,682,415 - 88,796,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112658   ⟹   XP_013968133
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1385,645,942 - 86,284,570 (+)NCBI
Dog10K_Boxer_Tasha388,158,509 - 88,796,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417271   ⟹   XP_022272979
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1385,966,361 - 86,284,570 (+)NCBI
Dog10K_Boxer_Tasha388,478,764 - 88,796,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038472580   ⟹   XP_038328508
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1385,935,760 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472581   ⟹   XP_038328509
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1386,073,399 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472582   ⟹   XP_038328510
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1385,752,591 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472583   ⟹   XP_038328511
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1386,089,584 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472584   ⟹   XP_038328512
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1386,089,450 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472585   ⟹   XP_038328513
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1386,291,025 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472586   ⟹   XP_038328514
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1386,277,481 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038472587   ⟹   XP_038328515
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1385,752,592 - 86,391,823 (+)NCBI
RefSeq Acc Id: XM_038482175   ⟹   XP_038338103
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha388,341,440 - 88,796,824 (+)NCBI
RefSeq Acc Id: XM_038482187   ⟹   XP_038338115
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha388,158,508 - 88,796,824 (+)NCBI
RefSeq Acc Id: XM_038482189   ⟹   XP_038338117
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha388,494,726 - 88,796,824 (+)NCBI
RefSeq Acc Id: XM_038482198   ⟹   XP_038338126
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha388,494,592 - 88,796,824 (+)NCBI
RefSeq Acc Id: XM_038533566   ⟹   XP_038389494
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,427,284 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533567   ⟹   XP_038389495
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,564,476 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533568   ⟹   XP_038389496
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,243,892 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533569   ⟹   XP_038389497
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,580,644 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533570   ⟹   XP_038389498
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,580,510 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533571   ⟹   XP_038389499
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,782,526 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533572   ⟹   XP_038389500
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,768,938 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038533573   ⟹   XP_038389501
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0386,243,893 - 86,883,362 (+)NCBI
RefSeq Acc Id: XM_038597848   ⟹   XP_038453776
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0386,042,376 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597849   ⟹   XP_038453777
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0386,179,896 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597850   ⟹   XP_038453778
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0385,858,991 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597851   ⟹   XP_038453779
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0386,196,069 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597852   ⟹   XP_038453780
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0386,195,935 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597853   ⟹   XP_038453781
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0386,397,002 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597854   ⟹   XP_038453782
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0386,383,409 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038597855   ⟹   XP_038453783
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0385,858,992 - 86,497,911 (+)NCBI
RefSeq Acc Id: XM_038662071   ⟹   XP_038517999
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,804,337 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662072   ⟹   XP_038518000
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,942,118 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662073   ⟹   XP_038518001
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,620,570 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662074   ⟹   XP_038518002
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,958,320 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662075   ⟹   XP_038518003
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,958,186 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662076   ⟹   XP_038518004
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0387,160,278 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662077   ⟹   XP_038518005
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0387,146,705 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_038662078   ⟹   XP_038518006
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0386,620,571 - 87,261,415 (+)NCBI
RefSeq Acc Id: XM_846648   ⟹   XP_851741
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1386,183,139 - 86,284,570 (+)NCBI
Dog10K_Boxer_Tasha388,695,978 - 88,796,824 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005618713 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968133 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328508 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328509 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328510 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328511 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328512 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328513 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038338103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038338115 (Get FASTA)   NCBI Sequence Viewer  
  XP_038338117 (Get FASTA)   NCBI Sequence Viewer  
  XP_038338126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389494 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389495 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389497 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389498 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389499 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389500 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453779 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453782 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517999 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518000 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518001 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518002 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518003 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518004 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518005 (Get FASTA)   NCBI Sequence Viewer  
  XP_038518006 (Get FASTA)   NCBI Sequence Viewer  
  XP_851741 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013968133   ⟸   XM_014112658
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005618713   ⟸   XM_005618656
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_851741   ⟸   XM_846648
- Peptide Label: isoform X2
- UniProtKB: E2QWA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272979   ⟸   XM_022417271
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000059186   ⟸   ENSCAFT00000064436
RefSeq Acc Id: ENSCAFP00000050517   ⟸   ENSCAFT00000088851
RefSeq Acc Id: ENSCAFP00000031277   ⟸   ENSCAFT00000035962
RefSeq Acc Id: ENSCAFP00000058356   ⟸   ENSCAFT00000077062
RefSeq Acc Id: ENSCAFP00000050389   ⟸   ENSCAFT00000077957
RefSeq Acc Id: ENSCAFP00000055262   ⟸   ENSCAFT00000091352
RefSeq Acc Id: ENSCAFP00000064881   ⟸   ENSCAFT00000086816
RefSeq Acc Id: ENSCAFP00000062622   ⟸   ENSCAFT00000072675
RefSeq Acc Id: ENSCAFP00000043833   ⟸   ENSCAFT00000089485
RefSeq Acc Id: XP_038328510   ⟸   XM_038472582
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328515   ⟸   XM_038472587
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038328508   ⟸   XM_038472580
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328509   ⟸   XM_038472581
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328512   ⟸   XM_038472584
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328511   ⟸   XM_038472583
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328514   ⟸   XM_038472586
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038328513   ⟸   XM_038472585
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038453778   ⟸   XM_038597850
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453783   ⟸   XM_038597855
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038453776   ⟸   XM_038597848
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453777   ⟸   XM_038597849
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453780   ⟸   XM_038597852
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453779   ⟸   XM_038597851
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453782   ⟸   XM_038597854
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038453781   ⟸   XM_038597853
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038518001   ⟸   XM_038662073
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518006   ⟸   XM_038662078
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038517999   ⟸   XM_038662071
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518000   ⟸   XM_038662072
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518003   ⟸   XM_038662075
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518002   ⟸   XM_038662074
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038518005   ⟸   XM_038662077
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038518004   ⟸   XM_038662076
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038338115   ⟸   XM_038482187
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338103   ⟸   XM_038482175
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338126   ⟸   XM_038482198
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338117   ⟸   XM_038482189
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389496   ⟸   XM_038533568
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389501   ⟸   XM_038533573
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038389494   ⟸   XM_038533566
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389495   ⟸   XM_038533567
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389498   ⟸   XM_038533570
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389497   ⟸   XM_038533569
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389500   ⟸   XM_038533572
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038389499   ⟸   XM_038533571
- Peptide Label: isoform X2
Protein Domains
RRM

Promoters
RGD ID:13682844
Promoter ID:EPDNEW_C912
Type:multiple initiation site
Name:PPARGC1A_1
Description:PPARG coactivator 1 alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1386,183,249 - 86,183,309EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016519 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000031277 ENTREZGENE
  ENSCAFP00000064881 ENTREZGENE
NCBI Gene PPARGC1A ENTREZGENE
UniProt E2QWA6 ENTREZGENE
VGNC ID VGNC:44837 ENTREZGENE