RPL34 (ribosomal protein L34) - Rat Genome Database

Name: RPL34
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: RPL34 (ribosomal protein L34) Canis lupus familiaris

Analyze

No known orthologs.

Symbol:

RPL34

Name:

ribosomal protein L34

RGD ID:

12385371

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic large ribosomal subunit (ortholog); synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

60S ribosomal protein L34

RGD Orthologs

Alliance Genes

More Info

homologs ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	28,989,797 - 28,994,375 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	28,989,880 - 28,994,375 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	13,026,633 - 13,031,203 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	29,218,326 - 29,222,896 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	29,217,834 - 29,224,473 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	25	18,724,120 - 18,724,473 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	29,213,106 - 29,217,596 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	28,957,186 - 28,961,757 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	10,894,388 - 10,899,012 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

cytosolic large ribosomal subunit (IBA,IEA,ISO)

cytosolic ribosome (IEA)

endoplasmic reticulum (IEA)

nucleolus (IEA)

ribonucleoprotein complex (IEA)

ribosome (IEA)

synapse (IEA,ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Variants

Variants in RPL34
62 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005639264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005639265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038444343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038444344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN346916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000061261 ⟹ ENSCAFP00000059809

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	32	28,989,880 - 28,994,375 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845043192 ⟹ ENSCAFP00845033865

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	18,724,120 - 18,724,473 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845052022 ⟹ ENSCAFP00845040812

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	32	29,217,834 - 29,224,473 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845052045 ⟹ ENSCAFP00845040829

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	32	29,218,381 - 29,224,473 (+)	Ensembl

RefSeq Acc Id:

XM_005639264 ⟹ XP_005639321

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	32	28,989,797 - 28,994,375 (+)	NCBI
Dog10K_Boxer_Tasha	32	13,026,633 - 13,031,203 (-)	NCBI

Sequence:

show sequence

GACGTAATTTCCGGTCCGACGCAGTCACAGTTAACCTTTAAACTTGCAAGCGCTTCCTTTTTCC
TCTTCCGGGGACGGCGTCCATAGGCGTTCAGAATGGTTCAGCGTTTGACATACCGTCGTAGGCT
GTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCCCGAACTCCTGGCAATAGAATCGTTTAC
CTTTATACCAAGAAGGTTGGGAAAGCGCCAAAGTCTGCATGTGGCGTGTGTCCTGGCCGACTTC
GAGGTGTTCGTGCGGTGAGACCTAAAGTCCTTATGAGATTGTCTAAAACGAAAAAACATGTCAG
CAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTT
ATTGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAAT
AAAAAAATGAGGATTTTTTTGAGTAATAAAAATCAAAAAGCTTGATCTGTTA

hide sequence

RefSeq Acc Id:

XM_005639265 ⟹ XP_005639322

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	32	28,989,886 - 28,994,375 (+)	NCBI
Dog10K_Boxer_Tasha	32	13,026,633 - 13,031,122 (-)	NCBI

Sequence:

show sequence

ATGGCTGCTCTTTCCTTTTCCCCGTCGCTCCTTGGTCTGCAATCGGCCGCCATCCGGGGAGGTG
GGGGAGCCAGGATCTGCGCAGCGCAGCCCTTGGAGCTGGCCTGGGAATAAGAGTTCAGGAGGGA
AGCTGGTGGCGTTCAGAATGGTTCAGCGTTTGACATACCGTCGTAGGCTGTCCTACAATACAGC
CTCTAACAAAACTAGGCTGTCCCGAACTCCTGGCAATAGAATCGTTTACCTTTATACCAAGAAG
GTTGGGAAAGCGCCAAAGTCTGCATGTGGCGTGTGTCCTGGCCGACTTCGAGGTGTTCGTGCGG
TGAGACCTAAAGTCCTTATGAGATTGTCTAAAACGAAAAAACATGTCAGCAGGGCCTATGGTGG
TTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATTGAGGAGCAGAAA
ATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAAAAAAATGAGGATT
TTTTTGAGTAATAAAAATCAAAAAGCTTGATCTGTTA

hide sequence

RefSeq Acc Id:

XM_038444343 ⟹ XP_038300271

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	32	29,218,326 - 29,222,896 (+)	NCBI

RefSeq Acc Id:

XM_038444344 ⟹ XP_038300272

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	32	29,218,407 - 29,222,896 (+)	NCBI

RefSeq Acc Id:

XM_038518730 ⟹ XP_038374658

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	32	29,213,106 - 29,217,596 (+)	NCBI

RefSeq Acc Id:

XM_038581935 ⟹ XP_038437863

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	32	10,894,388 - 10,899,012 (-)	NCBI

RefSeq Acc Id:

XM_038581936 ⟹ XP_038437864

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	32	10,894,388 - 10,898,931 (-)	NCBI

RefSeq Acc Id:

XM_038646678 ⟹ XP_038502606

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	32	28,957,186 - 28,961,757 (+)	NCBI

RefSeq Acc Id:

XM_038646679 ⟹ XP_038502607

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	32	28,957,267 - 28,961,757 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005639321	(Get FASTA)	NCBI Sequence Viewer
	XP_005639322	(Get FASTA)	NCBI Sequence Viewer
	XP_038300271	(Get FASTA)	NCBI Sequence Viewer
	XP_038300272	(Get FASTA)	NCBI Sequence Viewer
	XP_038374658	(Get FASTA)	NCBI Sequence Viewer
	XP_038437863	(Get FASTA)	NCBI Sequence Viewer
	XP_038437864	(Get FASTA)	NCBI Sequence Viewer
	XP_038502606	(Get FASTA)	NCBI Sequence Viewer
	XP_038502607	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000071706.1
	ENSCAFP00030039763.1
	ENSCAFP00030039791.1
	ENSCAFP00030039811.1
	ENSCAFP00030039832.1
	ENSCAFP00030039852.1
	ENSCAFP00040035063.1
	ENSCAFP00040035079.1
	ENSCAFP00040035120.1
	ENSCAFP00845033865.1
	ENSCAFP00845040812.1
	ENSCAFP00845040829
	ENSCAFP00845040829.1

RefSeq Acc Id:	XP_005639321 ⟸ XM_005639264
- UniProtKB:	A0A5F4D4Q9 (UniProtKB/TrEMBL), A0A8C0PL86 (UniProtKB/TrEMBL), A0A8C0TEP4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVL MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK hide sequence

RefSeq Acc Id:	XP_005639322 ⟸ XM_005639265
- UniProtKB:	A0A5F4D4Q9 (UniProtKB/TrEMBL), A0A8C0PL86 (UniProtKB/TrEMBL), A0A8C0TEP4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVL MRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK hide sequence

RefSeq Acc Id:

ENSCAFP00000059809 ⟸ ENSCAFT00000061261

RefSeq Acc Id:

XP_038374658 ⟸ XM_038518730

RefSeq Acc Id:

XP_038502606 ⟸ XM_038646678

RefSeq Acc Id:

XP_038502607 ⟸ XM_038646679

RefSeq Acc Id:	XP_038300271 ⟸ XM_038444343
- UniProtKB:	A0A5F4D4Q9 (UniProtKB/TrEMBL), A0A8C0PL86 (UniProtKB/TrEMBL), A0A8C0TEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038300272 ⟸ XM_038444344
- UniProtKB:	A0A5F4D4Q9 (UniProtKB/TrEMBL), A0A8C0PL86 (UniProtKB/TrEMBL), A0A8C0TEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038437863 ⟸ XM_038581935
- UniProtKB:	A0A5F4D4Q9 (UniProtKB/TrEMBL), A0A8C0PL86 (UniProtKB/TrEMBL), A0A8C0TEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038437864 ⟸ XM_038581936
- UniProtKB:	A0A5F4D4Q9 (UniProtKB/TrEMBL), A0A8C0PL86 (UniProtKB/TrEMBL), A0A8C0TEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845040812 ⟸ ENSCAFT00845052022

RefSeq Acc Id:

ENSCAFP00845040829 ⟸ ENSCAFT00845052045

RefSeq Acc Id:

ENSCAFP00845033865 ⟸ ENSCAFT00845043192

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000046934	Ensembl
	ENSCAFG00000059243	UniProtKB/TrEMBL
	ENSCAFG00030024739	UniProtKB/TrEMBL
	ENSCAFG00040021659	UniProtKB/TrEMBL
	ENSCAFG00845024457	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00845029396	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000107667.1	UniProtKB/TrEMBL
	ENSCAFT00030045531.1	UniProtKB/TrEMBL
	ENSCAFT00030045559.1	UniProtKB/TrEMBL
	ENSCAFT00030045583.1	UniProtKB/TrEMBL
	ENSCAFT00030045603.1	UniProtKB/TrEMBL
	ENSCAFT00030045628.1	UniProtKB/TrEMBL
	ENSCAFT00040040178.1	UniProtKB/TrEMBL
	ENSCAFT00040040193.1	UniProtKB/TrEMBL
	ENSCAFT00040040240.1	UniProtKB/TrEMBL
	ENSCAFT00845043192.1	UniProtKB/TrEMBL
	ENSCAFT00845052022.1	UniProtKB/TrEMBL
	ENSCAFT00845052045	ENTREZGENE
	ENSCAFT00845052045.1	UniProtKB/TrEMBL
Gene3D-CATH	6.20.340.10	UniProtKB/TrEMBL
	6.20.370.70	UniProtKB/TrEMBL
InterPro	Ribosomal_L34Ae	UniProtKB/TrEMBL
	Ribosomal_L34e_CS	UniProtKB/TrEMBL
KEGG Report	cfa:102152573	UniProtKB/TrEMBL
NCBI Gene	RPL34	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L34	UniProtKB/TrEMBL
	60S RIBOSOMAL PROTEIN L34	UniProtKB/TrEMBL
Pfam	Ribosomal_L34e	UniProtKB/TrEMBL
PRINTS	RIBOSOMALL34	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L34E	UniProtKB/TrEMBL
UniProt	A0A5F4D4Q9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PCS0_CANLF	UniProtKB/TrEMBL
	A0A8C0PCV2_CANLF	UniProtKB/TrEMBL
	A0A8C0PGA5_CANLF	UniProtKB/TrEMBL
	A0A8C0PL86	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RT20_CANLF	UniProtKB/TrEMBL
	A0A8C0TEP4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TEX4_CANLF	UniProtKB/TrEMBL
	A0A8C0TFH5_CANLF	UniProtKB/TrEMBL
	A0A8I3Q1D4_CANLF	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message