FOXF1 (forkhead box F1) - Rat Genome Database

Name: FOXF1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: FOXF1 (forkhead box F1) Canis lupus familiaris

Analyze

Symbol:

FOXF1

Name:

forkhead box F1

RGD ID:

12385068

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN animal organ morphogenesis (ortholog); cell-cell adhesion (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH congenital diaphragmatic hernia (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

forkhead box protein F1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXF1 (forkhead box F1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Foxf1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Foxf1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Foxf1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXF1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxf1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXF1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FOXF1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxf1 (forkhead box F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	66,343,776 - 66,347,785 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	66,345,150 - 66,347,935 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	66,355,810 - 66,359,808 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	66,565,325 - 66,569,328 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	66,566,196 - 66,569,484 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	66,588,163 - 66,592,141 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	66,423,363 - 66,427,352 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	66,836,698 - 66,840,702 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital diaphragmatic hernia (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

heart disease (ISO)

immunodeficiency 32B (ISO)

Infantile Hypertrophic Pyloric Stenosis 5 (ISO)

mastocytosis (ISO)

Megaduodenum (ISO)

obstructive lung disease (ISO)

persistent fetal circulation syndrome (ISO)

primary pulmonary hypertension (ISO)

VACTERL association (ISO)

ventricular septal defect (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ morphogenesis (IEA,ISO)

blood vessel development (IEA)

cardiac left ventricle morphogenesis (IEA)

cell-cell adhesion (IEA,ISO)

cellular response to cytokine stimulus (IEA,ISO)

cellular response to organic cyclic compound (IEA,ISO)

detection of wounding (IEA,ISO)

determination of left/right symmetry (IEA,ISO)

digestive tract development (IEA)

ductus arteriosus closure (IEA)

embryonic digestive tract development (IEA,ISO)

embryonic digestive tract morphogenesis (IEA)

embryonic ectodermal digestive tract morphogenesis (IEA)

embryonic foregut morphogenesis (IEA,ISO)

endocardial cushion development (IEA)

epithelial cell differentiation involved in mammary gland alveolus development (IEA,ISO)

epithelial tube branching involved in lung morphogenesis (IEA,ISO)

establishment of epithelial cell apical/basal polarity (IEA,ISO)

extracellular matrix organization (IEA,ISO)

heart development (IEA)

in utero embryonic development (IEA,ISO)

lateral mesodermal cell differentiation (IEA,ISO)

lung alveolus development (IEA,ISO)

lung development (IEA,ISO)

lung lobe morphogenesis (IEA,ISO)

lung morphogenesis (IEA,ISO)

lung vasculature development (IEA)

mesenchyme migration (IEA,ISO)

mesoderm development (IEA,ISO)

mesodermal cell differentiation (IEA,ISO)

midgut development (IEA)

morphogenesis of a branching structure (IEA)

negative regulation of inflammatory response (IEA,ISO)

negative regulation of mast cell degranulation (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

pancreas development (IEA)

positive regulation of cell migration (IEA,ISO)

positive regulation of cell-substrate adhesion (IEA,ISO)

positive regulation of DNA-templated transcription (IEA)

positive regulation of mesenchymal cell proliferation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

respiratory tube development (IEA)

right lung morphogenesis (IEA,ISO)

smooth muscle cell differentiation (IEA,ISO)

smoothened signaling pathway (IEA,ISO)

somitogenesis (IEA,ISO)

trachea development (IEA,ISO)

ureter development (IEA)

vasculogenesis (IEA,ISO)

venous blood vessel development (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

forkhead class A signaling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

FOXF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	66,343,776 - 66,347,785 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	66,345,150 - 66,347,935 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	66,355,810 - 66,359,808 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	66,565,325 - 66,569,328 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	66,566,196 - 66,569,484 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	66,588,163 - 66,592,141 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	66,423,363 - 66,427,352 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	66,836,698 - 66,840,702 (-)	NCBI		UU_Cfam_GSD_1.0

FOXF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	86,510,527 - 86,515,422 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	86,510,527 - 86,515,422 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	86,544,133 - 86,549,028 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	85,101,634 - 85,105,571 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	85,101,658 - 85,105,548	NCBI
Celera	16	70,844,972 - 70,848,909 (+)	NCBI		Celera
Cytogenetic Map	16	q24.1	NCBI
HuRef	16	72,283,842 - 72,287,779 (+)	NCBI		HuRef
CHM1_1	16	87,955,849 - 87,959,786 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	92,578,744 - 92,583,639 (+)	NCBI		T2T-CHM13v2.0

Foxf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	121,811,100 - 121,814,883 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	121,811,125 - 121,814,883 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	121,084,386 - 121,088,154 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	121,084,386 - 121,088,144 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	123,608,374 - 123,610,779 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	123,970,451 - 123,972,856 (+)	NCBI		MGSCv36	mm8
Celera	8	125,302,426 - 125,304,831 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	70.31	NCBI

Foxf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	66,062,635 - 66,066,427 (+)	NCBI		GRCr8
mRatBN7.2	19	49,153,949 - 49,157,741 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	49,153,699 - 49,157,738 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	55,945,226 - 55,949,016 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	56,628,949 - 56,632,741 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	58,843,413 - 58,847,205 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	53,012,306 - 53,016,100 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	53,012,332 - 53,016,086 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	63,756,636 - 63,760,430 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	19	48,400,056 - 48,404,066 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Foxf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	1,317,114 - 1,346,590 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955541	1,341,715 - 1,345,397 (+)	NCBI	ChiLan1.0	ChiLan1.0

FOXF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	96,269,228 - 96,274,680 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	102,186,430 - 102,190,920 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	67,183,416 - 67,188,211 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	86,515,150 - 86,519,949 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	86,516,119 - 86,519,949 (+)	Ensembl	panpan1.1		panPan2

Foxf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408261	4 - 1,756 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004943883	4 - 1,756 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	2,592,993 - 2,597,659 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	2,579,348 - 2,598,122 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	2,799,092 - 2,801,627 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FOXF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	71,898,473 - 71,902,624 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	71,898,786 - 71,903,661 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	3,803,343 - 3,807,492 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Foxf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	2,599,106 - 2,603,336 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	2,599,211 - 2,603,031 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FOXF1
32 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	4										5
Low	1		22	6	2	6	5		12	8	5	6
Below cutoff		5			4		1	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038476940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038538114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038602232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_546792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000031689 ⟹ ENSCAFP00000029503

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	66,345,150 - 66,347,935 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845007608 ⟹ ENSCAFP00845006014

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	66,566,196 - 66,569,484 (-)	Ensembl

RefSeq Acc Id:

XM_038476940 ⟹ XP_038332868

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	66,588,163 - 66,592,141 (-)	NCBI

RefSeq Acc Id:

XM_038538114 ⟹ XP_038394042

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	66,836,698 - 66,840,702 (-)	NCBI

RefSeq Acc Id:

XM_038602232 ⟹ XP_038458160

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	66,423,363 - 66,427,352 (-)	NCBI

RefSeq Acc Id:

XM_038666849 ⟹ XP_038522777

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	66,565,325 - 66,569,328 (-)	NCBI

RefSeq Acc Id:

XM_546792 ⟹ XP_546792

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	66,343,776 - 66,347,785 (-)	NCBI
Dog10K_Boxer_Tasha	5	66,355,810 - 66,359,808 (-)	NCBI

Sequence:

show sequence

GGCAGCAGCCACCCGATGTCTTCGGCGCCCGAGAAGCAGCAGCCACCGCACGGCGGCGGCGGCG
ACAAAAGAGGCGGCGGGGGCGGCGGGGGAGGCGGCGCGGCCATGGACCCTGTGGCGTCCGGGCC
GGCCAAGGCCAAGAAGACCAACGCGGGCTTCCGGCGCCCCGAGAAGCCGCCCTACTCGTACATC
GCGCTCATCGTCATGGCCATCCAGAGCTCGCCCACCAAGCGCCTGACGCTCAGCGAGATCTACC
AGTTCCTGCAGAGCCGCTTCCCCTTCTTCCGCGGCTCCTACCAGGGCTGGAAGAACTCGGTGCG
CCACAACCTCTCGCTCAACGAGTGCTTCATCAAGCTGCCCAAGGGCCTCGGGCGGCCCGGCAAG
GGCCACTACTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAGGAGGGCTCCTTTCGGCGGC
GGCCCCGCGGCTTCCGAAGGAAATGCCAGGCGCTCAAGCCCATGTACAGCATGATGAACGGGCT
GGGCTTCAACCACCTCCCGGACACCTACGGCTTCCAGGGCTCCGCCGGCGGCCTCTCCTGCCCG
CCCAACAGCCTGGCGCTGGAGAGCGGCCTGGGCATGATGAACGGCCACTTGCCGGCCAACGTGG
ACGGCATGGCTCTGCCCAGCCACTCGGTGCCACACCTGCCCGCCAACGGCGGCCACTCGTACAT
GGGCAGCTGCGGCGGCGCGGCGGCCGGCGAGTACCCGCACCACGACAGCTCAGTGCCCGCCTCC
CCGCTGCTGCCCGCCGCCGCCAGCGGGGTCATGGAGCCCCACGCCGTCTACTCGGGCTCCACGG
CCGCCTGGCCGCCCTCGGCCTCCGCGGCGCTCAACAGCGGCGCCTCCTACATCAAGCAGCAGCC
CCTGTCCCCCTGCAACCCCGCAGCCAACCCCCTGTCTGGCAGCCTCTCCACGCACTCCCTGGAC
CAGCCGTATCTACACCAGAACAGTCACAACGCCCCAGCCGACCTGCAAGGCATCCCGAGGTATC
ACTCCCAGTCTCCCGGCATGTGTGACCGCAAGGAGTTCGTCTTCTCCTTCAACACCATGGCGTC
CTCATCCATGCACTCGGCGGGCAGTGGCTCCTACTACCACCAGCAGGTCACCTACCAAGACATC
AAGCCCTGCGTGATGTGAGGCCGCAGCTGGCGGGGCCCTCCAGGCACGGGCGGCCTGGCTCGGG
GACCCCCGGAACCCATCGCAAGAAACTGCTTTATTCTTGAGGTATAACCGTAGGCAGAAGACAA
GGGTTTGACCCCTACCCACCCGGATTATTTGGAAAGGAATCCCCAAGGCAAAGACCCAGCTTGG
TGGTCAGCACCTCCTCCCACACTCCTTCAAAAAATTAACAAATGGTGGCTGTGGGGCCTGCTCT
GACTACAGCTGTTGGTAGAAGTATCTATTTTCGATCCAGTGGAAGCCGGCTGAGAAGGTGCTGT
ATTGGGGGAAACCCTCGACATCCAAACAAGAATTCTGCTGAGGCCTCTCCCCGCCTTCCCTCCA
ATGGCAAAAGTGGGGGAAGGTTTTCAGAAGAAAGGCAAACATGTGAGACCATCATTATCAAATA
CTTTTATTTTTTGGTTGAGTATTTATCTTTTAATTTTTAATTTTTTTTTTTTTTTGGAAAGAAT
GTCTTGGAATGCGCAAGTCTCCTCTTAGAGCCGTGTTTTGCAGGGAAGGGGGGGCAAGAAATCA
CGTCTTCCTCCCCATCTCAGAAGCCCTCCAGCAACCACAGGTGGATCTTTGTGCGGACTTGCAT
TTCTGAAGCCACTGTTCGTCTTACAAAAGGAAACTAGAAGGAGCCCAGAAGCAGGGGCTCCCCG
GGCCTCTGCCGTCCCCTCAGCCCTCCTCTGTCTTCTCTACAGTCCTTTTTGGTTTTGTTTCGAA
TTGCATTTTGACTCTTTTGGCGGGTGTTTTTCTCACAAGACCCGACTGTCTCCCGATCTCTACT
GTAAAAAAACGTGCTGGTGTGAGAGCGAGGGGAACACAGCGCGGCGCGGGGGCAGGGAAGGCCG
GTGAGCGCACGAATTCAGGATTGCGGCGACGCAGAAAGGTTAAGGCACTTTTTTAAACTATAGC
AAGGCTCATCCTGTTATTTATTCTACTTTCTTTCCCTAATAATCGAAACACCGCATAGGCTCCT
CCGTTTATCAGTATTAATGGTGTAACTTTGTTGGCAATATTTGCCGCGTAGAATTTTTTTTTTT
TTAGAGAACCATTGTAAATTTGAAACAAAGTCCGATCTGTGTAAAAACAAATTTCCATATGTTT
ATATAAATATATATATAAAATGAAGGACTACCCCCTTTTTTTTAGTATTTGGCTGCTGGGGTGC
AGCATTTGTGACACGTATTTCAAATTTCCTTCTGCACTGTATAAAATGACAATTTGAGGATGTT
TTGCCTTTTGTGTATTTTTTCCTAAAAAAAAGAACAAAAATAAAAATGTATAACATTTGTACAT
GGCCTTTAACATTGTATCAACTAGAAATAAAATCGCATGAGTATTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038332868	(Get FASTA)	NCBI Sequence Viewer
	XP_038394042	(Get FASTA)	NCBI Sequence Viewer
	XP_038458160	(Get FASTA)	NCBI Sequence Viewer
	XP_038522777	(Get FASTA)	NCBI Sequence Viewer
	XP_546792	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029503.3
	ENSCAFP00030029850.1
	ENSCAFP00845006014
	ENSCAFP00845006014.1

RefSeq Acc Id:

XP_546792 ⟸ XM_546792

- UniProtKB:

A0A8C0JVL8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSAPEKQQPPHGGGGDKRGGGGGGGGGAAMDPVASGPAKAKKTNAGFRRPEKPPYSYIALIVM
AIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWT
IDPASEFMFEEGSFRRRPRGFRRKCQALKPMYSMMNGLGFNHLPDTYGFQGSAGGLSCPPNSLA
LESGLGMMNGHLPANVDGMALPSHSVPHLPANGGHSYMGSCGGAAAGEYPHHDSSVPASPLLPA
AASGVMEPHAVYSGSTAAWPPSASAALNSGASYIKQQPLSPCNPAANPLSGSLSTHSLDQPYLH
QNSHNAPADLQGIPRYHSQSPGMCDRKEFVFSFNTMASSSMHSAGSGSYYHQQVTYQDIKPCVM

hide sequence

RefSeq Acc Id:

ENSCAFP00000029503 ⟸ ENSCAFT00000031689

RefSeq Acc Id:

XP_038332868 ⟸ XM_038476940

RefSeq Acc Id:

XP_038458160 ⟸ XM_038602232

RefSeq Acc Id:	XP_038522777 ⟸ XM_038666849
- UniProtKB:	A0A8C0JVL8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038394042 ⟸ XM_038538114
- UniProtKB:	A0A8C0JVL8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845006014 ⟸ ENSCAFT00845007608

Protein Domains

Fork-head

Promoters

RGD ID:

13683406

Promoter ID:

EPDNEW_C1476

Type:

multiple initiation site

Name:

FOXF1_1

Description:

forkhead box F1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	66,347,811 - 66,347,871	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019918	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018609	UniProtKB/TrEMBL
	ENSCAFG00845004240	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000031689.4	UniProtKB/TrEMBL
	ENSCAFT00030034238.1	UniProtKB/TrEMBL
	ENSCAFT00845007608	ENTREZGENE
	ENSCAFT00845007608.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Fork_head_dom	UniProtKB/TrEMBL
	TF_fork_head_CS_1	UniProtKB/TrEMBL
	TF_fork_head_CS_2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	FOXF1	ENTREZGENE
PANTHER	FORKHEAD BOX PROTEIN BINIOU	UniProtKB/TrEMBL
	FORKHEAD BOX PROTEIN F1	UniProtKB/TrEMBL
Pfam	Forkhead	UniProtKB/TrEMBL
PRINTS	FORKHEAD	UniProtKB/TrEMBL
PROSITE	FORK_HEAD_1	UniProtKB/TrEMBL
	FORK_HEAD_2	UniProtKB/TrEMBL
	FORK_HEAD_3	UniProtKB/TrEMBL
SMART	SM00339	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8C0JVL8	ENTREZGENE
	A0A8C0NNH6_CANLF	UniProtKB/TrEMBL
	A0A8I3RTE0_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:40949	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)