RPL31 (ribosomal protein L31) - Rat Genome Database

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Gene: RPL31 (ribosomal protein L31) Canis lupus familiaris
Analyze
Symbol: RPL31
Name: ribosomal protein L31
RGD ID: 12384462
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN cytoplasmic translation (inferred); translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L31; large ribosomal subunit protein eL31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC610034  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,400,195 - 29,400,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,400,216 - 29,400,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1041,758,134 - 41,767,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01042,700,902 - 42,710,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1042,693,031 - 42,709,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,412,727 - 42,421,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01042,695,934 - 42,705,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01042,887,691 - 42,896,808 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,400,195 - 29,400,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,400,216 - 29,400,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1041,758,134 - 41,767,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01042,700,902 - 42,710,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1042,693,031 - 42,709,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,412,727 - 42,421,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01042,695,934 - 42,705,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01042,887,691 - 42,896,808 (-)NCBIUU_Cfam_GSD_1.0
RPL31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382101,002,289 - 101,019,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2101,002,229 - 101,024,032 (+)EnsemblGRCh38hg38GRCh38
GRCh372101,618,751 - 101,636,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362100,985,123 - 101,002,587 (+)NCBINCBI36Build 36hg18NCBI36
Build 342101,077,268 - 101,081,398NCBI
Celera295,822,605 - 95,840,060 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef295,382,734 - 95,400,192 (+)NCBIHuRef
CHM1_12101,623,013 - 101,640,477 (+)NCBICHM1_1
T2T-CHM13v2.02101,460,986 - 101,478,421 (+)NCBIT2T-CHM13v2.0
Rpl31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,406,987 - 39,410,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,406,923 - 39,410,992 (+)EnsemblGRCm39 Ensembl
GRCm38139,367,851 - 39,371,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,367,842 - 39,371,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv37139,424,696 - 39,428,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36139,312,465 - 39,316,453 (+)NCBIMGSCv36mm8
Celera1592,888,049 - 92,888,542 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map118.3NCBI
Rpl31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,143,044 - 49,147,155 (+)NCBIGRCr8
mRatBN7.2941,647,397 - 41,651,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx950,143,377 - 50,147,422 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0955,266,125 - 55,270,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,548,123 - 53,552,167 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,086,959 - 46,090,444 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,774,871 - 45,778,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4938,439,431 - 38,442,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1938,440,871 - 38,444,883 (+)NCBI
Celera939,396,969 - 39,400,454 (+)NCBICelera
Cytogenetic Map9q22NCBI
Rpl31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554706,912,537 - 6,916,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554706,912,109 - 6,916,232 (+)NCBIChiLan1.0ChiLan1.0
RPL31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,206,182 - 27,225,988 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,208,963 - 27,226,498 (-)NCBINHGRI_mPanPan1
PanPan1.12A101,978,288 - 101,996,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A101,978,759 - 101,996,058 (+)Ensemblpanpan1.1panPan2
Rpl31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629286,478,127 - 86,482,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493666186,547 - 91,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493666186,834 - 91,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,281,339 - 53,295,304 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1353,289,993 - 53,295,387 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2355,836,226 - 55,841,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,710,622 - 4,714,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041172,330,229 - 172,335,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,795,872 - 5,800,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,795,374 - 5,800,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL31
9 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 5 17 1 7 1 6 2 9 10 7
Medium 8 10 7 1 7 5 5 8 2 4
Low
Below cutoff 10 7 38 10 10 10 12 11 21 16 18 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000003480   ⟹   ENSCAFP00000003226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1041,832,854 - 41,841,792 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000018083   ⟹   ENSCAFP00000038384
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3229,400,216 - 29,400,593 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000068489   ⟹   ENSCAFP00000059024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1041,825,185 - 41,841,792 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023317   ⟹   ENSCAFP00845018293
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1042,693,031 - 42,709,603 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845023343   ⟹   ENSCAFP00845018318
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1042,700,902 - 42,709,603 (-)Ensembl
RefSeq Acc Id: NM_001252203   ⟹   NP_001239132
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13229,400,195 - 29,400,624 (+)NCBI
Dog10K_Boxer_Tasha1041,758,134 - 41,767,485 (-)NCBI
ROS_Cfam_1.01042,700,902 - 42,710,022 (-)NCBI
UMICH_Zoey_3.11042,412,727 - 42,421,780 (-)NCBI
UNSW_CanFamBas_1.01042,695,934 - 42,705,287 (-)NCBI
UU_Cfam_GSD_1.01042,887,691 - 42,896,808 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001239132   ⟸   NM_001252203
- UniProtKB: E2R8G3 (UniProtKB/TrEMBL),   A0A8C0RQC2 (UniProtKB/TrEMBL),   J9NYL5 (UniProtKB/TrEMBL),   A0A8C0KUX0 (UniProtKB/TrEMBL),   A0A8C0RDD5 (UniProtKB/TrEMBL),   A0A8C0S7L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000038384   ⟸   ENSCAFT00000018083
RefSeq Acc Id: ENSCAFP00000059024   ⟸   ENSCAFT00000068489
RefSeq Acc Id: ENSCAFP00000003226   ⟸   ENSCAFT00000003480
RefSeq Acc Id: ENSCAFP00845018318   ⟸   ENSCAFT00845023343
RefSeq Acc Id: ENSCAFP00845018293   ⟸   ENSCAFT00845023317


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002215 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000011382 Ensembl
  ENSCAFG00000053707 UniProtKB/TrEMBL
  ENSCAFG00030005627 UniProtKB/TrEMBL
  ENSCAFG00030017484 UniProtKB/TrEMBL
  ENSCAFG00030021297 UniProtKB/TrEMBL
  ENSCAFG00040009631 UniProtKB/TrEMBL
  ENSCAFG00040010675 UniProtKB/TrEMBL
  ENSCAFG00040014269 UniProtKB/TrEMBL
  ENSCAFG00040015326 UniProtKB/TrEMBL
  ENSCAFG00845013103 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFG00845030299 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003480.5 UniProtKB/TrEMBL
  ENSCAFT00000068489.2 UniProtKB/TrEMBL
  ENSCAFT00000096784.1 UniProtKB/TrEMBL
  ENSCAFT00030010296.1 UniProtKB/TrEMBL
  ENSCAFT00030032179.1 UniProtKB/TrEMBL
  ENSCAFT00030039100.1 UniProtKB/TrEMBL
  ENSCAFT00030039150.1 UniProtKB/TrEMBL
  ENSCAFT00040017860.1 UniProtKB/TrEMBL
  ENSCAFT00040019739.1 UniProtKB/TrEMBL
  ENSCAFT00040026314.1 UniProtKB/TrEMBL
  ENSCAFT00040026364.1 UniProtKB/TrEMBL
  ENSCAFT00040028223.1 UniProtKB/TrEMBL
  ENSCAFT00845023317.1 UniProtKB/TrEMBL
  ENSCAFT00845023343 ENTREZGENE
  ENSCAFT00845023343.1 UniProtKB/TrEMBL
  ENSCAFT00845053758.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.440.10 UniProtKB/TrEMBL
InterPro Ribosomal_L31e UniProtKB/TrEMBL
  Ribosomal_L31e_CS UniProtKB/TrEMBL
  Ribosomal_L31e_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:609530 UniProtKB/TrEMBL
NCBI Gene RPL31 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  PTHR10956 UniProtKB/TrEMBL
Pfam Ribosomal_L31e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L31E UniProtKB/TrEMBL
SMART Ribosomal_L31e UniProtKB/TrEMBL
Superfamily-SCOP SSF54575 UniProtKB/TrEMBL
UniProt A0A8C0KUX0 ENTREZGENE
  A0A8C0NY70_CANLF UniProtKB/TrEMBL
  A0A8C0RDD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RQC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S7L4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NRD8_CANLF UniProtKB/TrEMBL
  E2R8G3 ENTREZGENE, UniProtKB/TrEMBL
  J9NYL5 ENTREZGENE
UniProt Secondary J9NYL5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 RPL31  ribosomal protein L31  RPL31  ribosomal protein L31  Data merged from RGD:13329443 737654 PROVISIONAL