TMEM256 (transmembrane protein 256) - Rat Genome Database

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Gene: TMEM256 (transmembrane protein 256) Canis lupus familiaris
Analyze
Symbol: TMEM256
Name: transmembrane protein 256
RGD ID: 12383889
Description: ASSOCIATED WITH asphyxiating thoracic dystrophy 3 (ortholog); common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C5H17orf61
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,336,588 - 32,337,703 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,474,709 - 32,475,824 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,442,276 - 32,443,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,440,845 - 32,443,378 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,407,513 - 32,408,628 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,366,266 - 32,367,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,543,512 - 32,544,627 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
TMEM256
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,336,588 - 32,337,703 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,474,709 - 32,475,824 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,442,276 - 32,443,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,440,845 - 32,443,378 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,407,513 - 32,408,628 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,366,266 - 32,367,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,543,512 - 32,544,627 (-)NCBIUU_Cfam_GSD_1.0
TMEM256
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,402,975 - 7,404,097 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,402,975 - 7,404,097 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,306,294 - 7,307,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,247,018 - 7,248,142 (-)NCBINCBI36Build 36hg18NCBI36
Celera177,332,169 - 7,333,291 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,200,390 - 7,201,545 (-)NCBIHuRef
CHM1_1177,315,373 - 7,316,537 (-)NCBICHM1_1
T2T-CHM13v2.0177,307,020 - 7,308,140 (-)NCBIT2T-CHM13v2.0
Tmem256
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,729,375 - 69,730,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,729,340 - 69,730,444 (+)EnsemblGRCm39 Ensembl
GRCm381169,838,525 - 69,839,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,838,514 - 69,839,618 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,652,027 - 69,653,060 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,654,704 - 69,655,814 (+)NCBIMGSCv36mm8
Celera1177,399,482 - 77,400,515 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.89NCBI
Tmem256
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,056,959 - 55,058,869 (+)NCBIGRCr8
mRatBN7.21054,559,030 - 54,560,146 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,555,360 - 54,560,120 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,221,553 - 59,222,669 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,710,120 - 58,711,236 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,217,798 - 54,218,914 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,446,022 - 56,447,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,445,647 - 56,447,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,190,347 - 56,192,257 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,678,860 - 56,680,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1053,713,408 - 53,714,524 (+)NCBICelera
Cytogenetic Map10q24NCBI
Tmem256
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,520,854 - 9,522,045 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,520,854 - 9,522,051 (+)NCBIChiLan1.0ChiLan1.0
TMEM256
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,999,949 - 15,001,121 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,965,759 - 16,966,934 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,437,147 - 7,438,323 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,423,648 - 7,424,799 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,423,655 - 7,424,798 (-)Ensemblpanpan1.1panPan2
Tmem256
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,211,101 - 47,213,768 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595686,789 - 687,909 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595686,786 - 687,926 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100521350
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1173,130,766 - 73,131,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,463,843 - 82,464,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM256
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,779,412 - 6,780,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,779,067 - 6,780,693 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,627,991 - 14,629,161 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem256
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,017,352 - 10,018,582 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,017,349 - 10,018,658 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM256
8 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845038959   ⟹   ENSCAFP00845030512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl532,440,845 - 32,443,378 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845038990   ⟹   ENSCAFP00845030539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl532,442,296 - 32,443,348 (-)Ensembl
RefSeq Acc Id: XM_038475535   ⟹   XP_038331463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1532,407,513 - 32,408,628 (-)NCBI
RefSeq Acc Id: XM_038536703   ⟹   XP_038392631
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0532,543,512 - 32,544,627 (-)NCBI
RefSeq Acc Id: XM_038600874   ⟹   XP_038456802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0532,366,266 - 32,367,381 (-)NCBI
RefSeq Acc Id: XM_038665423   ⟹   XP_038521351
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0532,442,276 - 32,443,391 (-)NCBI
RefSeq Acc Id: XM_844600   ⟹   XP_849693
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1532,336,588 - 32,337,703 (-)NCBI
Dog10K_Boxer_Tasha532,474,709 - 32,475,824 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_849693   ⟸   XM_844600
- UniProtKB: A0A8C0QET2 (UniProtKB/TrEMBL),   A0A8I3PIS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038331463   ⟸   XM_038475535
RefSeq Acc Id: XP_038456802   ⟸   XM_038600874
RefSeq Acc Id: XP_038521351   ⟸   XM_038665423
- UniProtKB: A0A8C0QET2 (UniProtKB/TrEMBL),   A0A8I3PIS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392631   ⟸   XM_038536703
- UniProtKB: A0A8C0QET2 (UniProtKB/TrEMBL),   A0A8I3PIS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845030512   ⟸   ENSCAFT00845038959
RefSeq Acc Id: ENSCAFP00845030539   ⟸   ENSCAFT00845038990


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000023205 UniProtKB/TrEMBL
  ENSCAFG00030014328 UniProtKB/TrEMBL
  ENSCAFG00040004730 UniProtKB/TrEMBL
  ENSCAFG00845022094 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000035538.4 UniProtKB/TrEMBL
  ENSCAFT00000060019.2 UniProtKB/TrEMBL
  ENSCAFT00030026491.1 UniProtKB/TrEMBL
  ENSCAFT00040008889.1 UniProtKB/TrEMBL
  ENSCAFT00845038959.1 UniProtKB/TrEMBL
  ENSCAFT00845038990 ENTREZGENE
  ENSCAFT00845038990.1 UniProtKB/TrEMBL
InterPro DUF423 UniProtKB/TrEMBL
KEGG Report cfa:607800 UniProtKB/TrEMBL
NCBI Gene TMEM256 ENTREZGENE
PANTHER PTHR43461 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 256 UniProtKB/TrEMBL
Pfam DUF423 UniProtKB/TrEMBL
UniProt A0A8C0QET2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PIS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PIW8_CANLF UniProtKB/TrEMBL
  A0A8P0P9R7_CANLF UniProtKB/TrEMBL