HOXC13 (homeobox C13) - Rat Genome Database

Name: HOXC13
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: HOXC13 (homeobox C13) Canis lupus familiaris

Analyze

Symbol:

HOXC13

Name:

homeobox C13

RGD ID:

12383769

Description:

ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN anatomical structure morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); hair follicle development (ortholog); ASSOCIATED WITH BILATERAL CLEFT LIP (ortholog); ectodermal dysplasia 4 (ortholog); ectodermal dysplasia 9 (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeo box C13; homeobox protein Hox-C13

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HOXC13 (homeobox C13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Hoxc13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hoxc13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hoxc13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HOXC13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hoxc13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HOXC13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HOXC13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hoxc13 (homeobox C13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HOXC10 (homeobox C10)	HGNC	OrthoDB, Panther
Homo sapiens (human):	HOXD13 (homeobox D13)	HGNC	OrthoDB

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,315,532 - 1,323,470 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,273,131 - 1,323,370 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,926,178 - 44,934,051 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,319,256 - 1,327,126 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,319,221 - 1,327,051 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,336,900 - 1,344,764 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,318,461 - 1,326,337 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,329,789 - 45,337,670 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

BILATERAL CLEFT LIP (ISO)

ectodermal dysplasia 4 (ISO)

ectodermal dysplasia 9 (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure morphogenesis (IEA,ISO)

anterior/posterior pattern specification (IEA,ISO)

hair follicle development (IEA,ISO)

nail development (IEA,ISO)

positive regulation of DNA-templated transcription (IEA)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

tongue morphogenesis (IEA,ISO)

Cellular Component

nucleus (IEA)

Molecular Function

chromatin binding (IEA)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

References

Additional References at PubMed

PMID:15596718	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HOXC13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,315,532 - 1,323,470 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,273,131 - 1,323,370 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,926,178 - 44,934,051 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,319,256 - 1,327,126 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,319,221 - 1,327,051 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,336,900 - 1,344,764 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,318,461 - 1,326,337 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,329,789 - 45,337,670 (+)	NCBI		UU_Cfam_GSD_1.0

HOXC13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,938,831 - 53,946,544 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	53,938,831 - 53,946,544 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,332,615 - 54,340,328 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,618,843 - 52,626,595 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	52,618,842 - 52,626,594	NCBI
Celera	12	53,982,194 - 53,989,933 (+)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,370,279 - 51,377,685 (+)	NCBI		HuRef
CHM1_1	12	54,299,300 - 54,307,033 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,904,353 - 53,912,048 (+)	NCBI		T2T-CHM13v2.0

Hoxc13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,829,566 - 102,837,249 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	102,829,538 - 102,837,249 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	102,921,131 - 102,928,814 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,921,103 - 102,928,814 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,751,562 - 102,759,245 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	102,749,165 - 102,756,848 (+)	NCBI		MGSCv36	mm8
Celera	15	105,078,954 - 105,086,637 (+)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	57.99	NCBI

Hoxc13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	135,937,126 - 135,943,962 (+)	NCBI		GRCr8
mRatBN7.2	7	134,058,640 - 134,065,479 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,058,640 - 134,064,800 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	144,531,814 - 144,538,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,531,814 - 144,537,966 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,323,171 - 142,329,323 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	141,685,004 - 141,691,159 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	130,489,719 - 130,491,373 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Hoxc13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	1,197,295 - 1,205,127 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	1,197,295 - 1,205,098 (+)	NCBI	ChiLan1.0	ChiLan1.0

HOXC13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	40,239,252 - 40,246,959 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	40,236,020 - 40,243,727 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,808,575 - 34,816,324 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,596,821 - 35,604,560 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,596,821 - 35,604,560 (-)	Ensembl	panpan1.1		panPan2

Hoxc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,997,436 - 62,004,487 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	11,160,343 - 11,166,616 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HOXC13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,151,084 - 19,158,646 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,151,096 - 19,159,008 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	19,624,272 - 19,632,185 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HOXC13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,039,034 - 50,057,178 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,049,509 - 50,055,895 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,985,021 - 195,992,836 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hoxc13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	1,993,854 - 2,000,500 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	1,993,854 - 2,001,623 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HOXC13
95 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium						6
Low								8
Below cutoff	2	5	1	1	1		3		7	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038438019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038512724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_851714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005302851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005315610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005380184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005413496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY308815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF381335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000010694 ⟹ ENSCAFP00000009915

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	1,273,131 - 1,277,395 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000010716 ⟹ ENSCAFP00000009935

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	1,315,524 - 1,323,370 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845032616 ⟹ ENSCAFP00845025509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	1,319,221 - 1,327,051 (-)	Ensembl

RefSeq Acc Id:

XM_038438019 ⟹ XP_038293947

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	1,319,256 - 1,327,126 (-)	NCBI

RefSeq Acc Id:

XM_038512724 ⟹ XP_038368652

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	1,336,900 - 1,344,764 (-)	NCBI

RefSeq Acc Id:

XM_038577825 ⟹ XP_038433753

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	45,329,789 - 45,337,670 (+)	NCBI

RefSeq Acc Id:

XM_038640478 ⟹ XP_038496406

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	1,318,461 - 1,326,337 (-)	NCBI

RefSeq Acc Id:

XM_851714 ⟹ XP_856807

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	1,315,532 - 1,323,470 (-)	NCBI
Dog10K_Boxer_Tasha	27	44,926,178 - 44,934,051 (+)	NCBI

Sequence:

show sequence

GGAGGAGGAGGAGGAGGAGGGAGGGGAGAGGAGCGAGGTGTCTCCCTAGCTCGCTGCCTCTGGC
AAGTGGAGTTTTTAGAAAGTTCGCGCAGACCATGTCATGACCACTTCGCTGCTCCTGCATCCGC
GCTGGCCGGAGAGCCTTATGTACGTCTATGAGGACAGCGCGGCGGAGGGCGGCGGCGGCGGCGG
CGGCGCGGGCGGCGCGGGGGGCGGCTGCAGCGGAGCGAGCCCCGGCAAGGCCCCCAGCATGGAC
GGGCTGGGCAGCGGCTGCCCCGCCAGCCACTGCCGCGACCTGCTCCCGCACCCCGTGCTGGGCC
GCCCGCCCGCCCCCCTGGGCGCCCCGCAGGGCGCCGTCTACACGGACATCCCGGCCCCGGAGGC
GGCGCGCCAGTGCGCCCCGCCGCCGGCGCCCCCCACCTCGTCCAGCGCCACCCTGGGCTACGGC
TACCCGTTCGGGGGCAGCTACTACGGCTGCCGCCTGTCGCACAACGTGAACCTGCAGCAGAAGC
CCTGCGCCTACCACCCGGGCGACAAGTACGCGGAGCCGTCGGGCGCCCTGCCCGGGGACGACCT
GTCCTCCAGGGCCAAGGAGTTCGCCTTCTACCCCAGCTTCGCCAGCTCCTACCAGGCGGTGCCC
GGCTACCTGGACGTGTCGGTGGTGCCCGGCATCAGCGGGCACCCGGAGCCGCGCCACGACGCGC
TCATCCCCGTCGAAGGCTACCAGCACTGGGCGCTCTCCAACGGCTGGGACAGTCAGGTGTACTG
CTCCAAGGAGCAGTCGCAGTCCGCGCACCTCTGGAAGTCCCCCTTCCCAGATGTGGTTCCCCTA
CAGCCCGAGGTGAGCAGCTACCGGCGCGGGCGCAAGAAACGCGTGCCCTACACCAAGGTGCAGC
TGAAGGAGCTAGAAAAGGAGTACGCTGCCAGCAAGTTCATCACCAAAGAGAAGCGCCGGCGCAT
CTCTGCCACCACGAACCTCTCCGAGCGCCAGGTCACCATCTGGTTCCAGAACCGACGGGTCAAA
GAGAAGAAGGTGGTCAGCAAATCGAAAGCGCCTCATCTCCACTCCACCTGACCAACCGGCTGGC
CACCTGCCCCGTCTATTTATGTCGCCGCTTTGTACCATAACCGAACCCAACGAAGGACACTTCG
CCGGTGCAGACGAATATTTAATGTTAACAAGAAAGAGTAACTGCGCCATGGGAGGCAGAGAGGC
TCGGAGGGCGAGCTCTGCAGCCCCCCACTCCCCACCCCATCCTCAGCCCCCCACCGCCATGCAG
ATGGGACCTATGAGGCCTAGAGAGCTTCTAGAGAGCTTCGGCGGTGGGGCTGGGTGGGCTGTGG
GAGGAAGGCTGGGAGCCTGCACTCCCCTTTGCCCTCATCCCCCGCCTCGCCAGAAAGCTGAGAG
GCAGGGAGCGAAACGCCCGATCATTCCAACCAAAGCAGGGCTGGGGGACCCCAAATGACCCCAT
TCTTGCCTCATCCTTTGCCAGGCAGTTGGTGACCCTCCTGAGGGTGGGGCCCAGCGCAGACCTG
GCCGAGCTCAGTGGCTTCGGCCTTCCCCTTCCTCGTCCCGCTCCCTGTCCCGCCCGCACTCCTT
AGTTAGGCGAGATTTCCCGGTTAAGATTCTCTGTGCATATTTTAAAAGTCACGTTAATATTAAT
GATAATTGTTAGGGATCCGGCATTGTGACTGGAGTACACACAGCGCATAGGTTTTCTTTCTTTC
CTGTTTCAACAAAAGCTGGAATTGGTGGAGGAGCTGCCTATCCCCACCTCAACCAGGAAACTGA
ATTTCTCTGGAGGAGCTGACTCTGCCCCACGGTCTCCTCCTGGGCTCTGCTCTCTCAGTCCCCT
GCAGAAATCCAAGGAGGATGGAAACTCCAACCACGCTGCTAAATATCTTCCCCCTTCTCCTTCC
TTCCCTCCATCCCTCTCCCTCCCGGGGATCAGGCCAGGCACAGAAGCAGAACGTTTTTCTAAGG
AAAGGACGAACTTCTCTTCCAAGGGGATGGAGAGTGGGTCCCCGGCAGAGCCCCTCCCCAGTTG
CTCCTCCGCGGAGGCAATCGCTGAGAGAGCCTCACACTTTCACTTCTACCGATTGTCCAGAGGA
AAGCAGTTTTCTTCCAGGAGGCCAAAATAACCAGCCCCCAATTAACCAGCTAATGTAGACGCTG
CCTAACATTTCCCTCCTCGAAGGCCAACTTGCTGCCGAGGGGGGAGGTCCCTCTCCCTTCTCCC
TTCCCACTGGTGCATTACAAAACAGTGTTCTTTTGAAATGTTCATCAGAAATAGGCTTTTTTAA
AATGTTGTGTATCTGTATATAGTATTGTGATGTCTGAATGACAATGTACTGAATGCAAAAAGAA
AAAAACAACCCCACAGACCTGTTTTTAAAATAAAATCTTTTTTTTTTTTGCCTTGA

hide sequence

RefSeq Acc Id:

XR_005302851

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	1,320,685 - 1,323,646 (-)	NCBI

RefSeq Acc Id:

XR_005315610

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	27	44,929,661 - 44,932,622 (+)	NCBI

RefSeq Acc Id:

XR_005380184

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	45,333,280 - 45,336,241 (+)	NCBI

RefSeq Acc Id:

XR_005413496

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	1,319,890 - 1,322,851 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038293947	(Get FASTA)	NCBI Sequence Viewer
	XP_038368652	(Get FASTA)	NCBI Sequence Viewer
	XP_038433753	(Get FASTA)	NCBI Sequence Viewer
	XP_038496406	(Get FASTA)	NCBI Sequence Viewer
	XP_856807	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AIK66440	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000009935.4
	ENSCAFP00030030227.1
	ENSCAFP00040032970.1
	ENSCAFP00845025509
	ENSCAFP00845025509.1

RefSeq Acc Id:

XP_856807 ⟸ XM_851714

- UniProtKB:

A0A8I3NWE9 (UniProtKB/TrEMBL), A0A8P0SC12 (UniProtKB/TrEMBL), A0A8C0TAU1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTSLLLHPRWPESLMYVYEDSAAEGGGGGGGAGGAGGGCSGASPGKAPSMDGLGSGCPASHCR
DLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRL
SHNVNLQQKPCAYHPGDKYAEPSGALPGDDLSSRAKEFAFYPSFASSYQAVPGYLDVSVVPGIS
GHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRK
KRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPH
LHST

hide sequence

RefSeq Acc Id:

ENSCAFP00000009935 ⟸ ENSCAFT00000010716

RefSeq Acc Id:

ENSCAFP00000009915 ⟸ ENSCAFT00000010694

RefSeq Acc Id:

XP_038368652 ⟸ XM_038512724

RefSeq Acc Id:

XP_038496406 ⟸ XM_038640478

RefSeq Acc Id:	XP_038293947 ⟸ XM_038438019
- UniProtKB:	A0A8I3NWE9 (UniProtKB/TrEMBL), A0A8P0SC12 (UniProtKB/TrEMBL), A0A8C0TAU1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038433753 ⟸ XM_038577825
- UniProtKB:	A0A8C0RND4 (UniProtKB/TrEMBL), A0A8C0TAU1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845025509 ⟸ ENSCAFT00845032616

Protein Domains

Homeobox

Promoters

RGD ID:

13688071

Promoter ID:

EPDNEW_C6140

Type:

multiple initiation site

Name:

HOXC13_1

Description:

homeobox C13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	1,323,297 - 1,323,357	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006648	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018851	UniProtKB/TrEMBL
	ENSCAFG00040020440	UniProtKB/TrEMBL
	ENSCAFG00845018448	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000010716.6	UniProtKB/TrEMBL
	ENSCAFT00030034660.1	UniProtKB/TrEMBL
	ENSCAFT00040037823.1	UniProtKB/TrEMBL
	ENSCAFT00845032616	ENTREZGENE
	ENSCAFT00845032616.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	HoxA13_N	UniProtKB/TrEMBL
KEGG Report	cfa:486503	UniProtKB/TrEMBL
NCBI Gene	HOXC13	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN HOX-C13	UniProtKB/TrEMBL
	SEGMENTATION PROTEIN FUSHI TARAZU-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	HoxA13_N	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A0A0QHB7_CANLF	UniProtKB/TrEMBL
	A0A8C0RND4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TAU1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NWE9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SC12	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:41758	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM