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Gene: GABRB1 (gamma-aminobutyric acid type A receptor subunit beta1) Canis lupus familiaris

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Symbol:

GABRB1

Name:

gamma-aminobutyric acid type A receptor subunit beta1

RGD ID:

12383392

Description:

ENCODES a protein that exhibits G protein-coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential (ortholog); GABA receptor binding (ortholog); GABA-A receptor activity (ortholog); INVOLVED IN cellular response to histamine (ortholog); central nervous system neuron development (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 45 (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); nuclear envelope (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

gamma-aminobutyric acid (GABA) A receptor, beta 1; gamma-aminobutyric acid receptor subunit beta-1; gamma-aminobutyric acid type A receptor beta1 subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	43,011,491 - 43,349,876 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	42,992,569 - 43,349,923 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	42,942,633 - 43,300,315 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	43,598,384 - 43,955,432 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	43,598,012 - 43,955,599 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	43,276,378 - 43,634,632 (+)	NCBI		UMICH_Zoey_3.1
UU_Cfam_GSD_1.0	13	43,691,479 - 44,049,754 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adult respiratory distress syndrome (ISO)

autistic disorder (ISO)

developmental and epileptic encephalopathy 45 (ISO)

hepatic encephalopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to histamine (ISO)

central nervous system neuron development (ISO)

chloride transmembrane transport (IBA,IEA)

chloride transport (IEA)

gamma-aminobutyric acid signaling pathway (ISO)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (ISO)

ovulation cycle (ISO)

response to progesterone (ISO)

response to toxic substance (ISO)

Cellular Component

chloride channel complex (IEA)

dendrite (ISO)

GABA-A receptor complex (IBA)

GABA-ergic synapse (ISO)

membrane (IEA)

nuclear envelope (ISO)

plasma membrane (IEA)

postsynaptic membrane (IEA)

postsynaptic specialization membrane (ISO)

presynaptic active zone membrane (ISO)

receptor complex (ISO)

Schaffer collateral - CA1 synapse (ISO)

synapse (IEA)

Molecular Function

chloride channel activity (IBA,IEA)

extracellular ligand-gated monoatomic ion channel activity (IEA)

G protein-coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential (ISO)

GABA receptor binding (ISO)

GABA-A receptor activity (IBA,IEA,ISO)

GABA-gated chloride ion channel activity (ISO)

ligand-gated monoatomic ion channel activity (ISO)

ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ISO)

monoatomic anion channel activity (ISO)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

GABRB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	43,011,491 - 43,349,876 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	42,992,569 - 43,349,923 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	42,942,633 - 43,300,315 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	43,598,384 - 43,955,432 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	43,598,012 - 43,955,599 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	43,276,378 - 43,634,632 (+)	NCBI		UMICH_Zoey_3.1
UU_Cfam_GSD_1.0	13	43,691,479 - 44,049,754 (+)	NCBI		UU_Cfam_GSD_1.0

GABRB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	46,993,647 - 47,426,447 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	46,993,723 - 47,426,447 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	47,033,584 - 47,428,464 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	46,728,336 - 47,123,202 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	46,874,506 - 47,269,373	NCBI
Celera	4	47,482,542 - 47,877,035 (+)	NCBI		Celera
Cytogenetic Map	4	p12	NCBI
HuRef	4	46,352,751 - 46,747,922 (+)	NCBI		HuRef
CHM1_1	4	47,032,490 - 47,427,496 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	46,998,964 - 47,393,806 (+)	NCBI		T2T-CHM13v2.0

Gabrb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	71,815,264 - 72,306,915 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	71,815,456 - 72,306,380 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	71,657,921 - 72,149,572 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	71,658,113 - 72,149,037 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	72,091,255 - 72,528,483 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	71,979,151 - 72,416,379 (+)	NCBI		MGSCv36	mm8
Celera	5	68,964,933 - 69,390,319 (+)	NCBI		Celera
Cytogenetic Map	5	C3.2	NCBI
cM Map	5	38.18	NCBI

Gabrb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	36,434,339 - 36,917,920 (-)	NCBI		GRCr8
mRatBN7.2	14	36,068,725 - 36,548,946 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	36,080,393 - 36,548,948 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	36,416,572 - 36,894,556 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	37,721,331 - 38,199,312 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	36,209,655 - 36,687,660 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	38,631,192 - 39,112,598 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	38,643,385 - 39,112,600 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	38,453,142 - 38,924,073 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	38,530,259 - 39,005,615 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	38,532,649 - 39,008,000 (-)	NCBI
Celera	14	35,310,585 - 35,771,142 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Gabrb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	1,132,860 - 1,514,376 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	1,126,223 - 1,514,291 (-)	NCBI	ChiLan1.0	ChiLan1.0

GABRB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	80,428,758 - 80,876,408 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	80,688,929 - 81,138,103 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	74,727,321 - 75,164,407 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	85,458,810 - 85,894,427 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	85,459,225 - 85,857,321 (-)	Ensembl	panpan1.1		panPan2

Gabrb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	32,699,565 - 33,078,224 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	13,220,236 - 13,586,209 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	13,219,962 - 13,593,868 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GABRB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	36,978,547 - 37,355,008 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	36,978,014 - 37,354,950 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	39,176,670 - 39,275,449 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GABRB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	2,829,385 - 3,254,292 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	2,832,450 - 3,217,326 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	48,873,122 - 49,316,579 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gabrb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	19,600,946 - 20,017,278 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	19,595,802 - 20,019,368 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GABRB1
3122 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005628158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022426961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038556011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038556012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038556013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038556014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038685558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038688595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038688604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038688618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000002993 ⟹ ENSCAFP00000002776

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	13	42,992,569 - 43,349,923 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845015078 ⟹ ENSCAFP00845011701

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	13	43,598,012 - 43,955,599 (+)	Ensembl

RefSeq Acc Id:

XM_005628158 ⟹ XP_005628215

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	13	43,011,491 - 43,349,876 (+)	NCBI
Dog10K_Boxer_Tasha	13	42,962,056 - 43,300,062 (+)	NCBI

Sequence:

show sequence

GCGTCGACGGCACGAGGGGCCGCGTGCGGACGGCTCCTTGGGGACGCCGGGGAAGCTGATGCGA
CGACCCCTGCTGGGAGCGGAGGACAGCAGAGGCTCAGGATTATACACTCACCATGTATTTCCAG
CAGTCTTGGAAAGACAAAAGGCTTTCTTATTCTGGAATCCCGCTAAACCTCACATTAGACAACA
GGGTAGCTGACCAACTCTGGGTGCCAGACACCTACTTTCTGAATGACAAGAAATCATTTGTGCA
TGGAGTTACAGTGAAAAATCGAATGATCCGACTTCATCCTGATGGAACAGTTCTCTATGGACTC
CGGATCACAACCACAGCTGCATGTATGATGGATCTACGTAGATATCCTCTGGATGAACAGAACT
GCACTCTGGAGATTGAAAGTTATGGCTATACCACGGATGACATTGAGTTTTACTGGAATGGAGG
AGAGGGAGCAGTAACTGGAGTCAATAAAATAGAGCTTCCTCAGTTTTCAATTGTCGACTACAAG
ATGGTATCCAAGAAAGTGGAGTTCACAACTGGGGCATATCCACGACTGTCACTAAGTTTTCGTC
TAAAGAGAAACATTGGTTACTTCATTTTACAAACCTACATGCCTTCCACACTGATTACAATTCT
GTCCTGGGTGTCTTTTTGGATCAACTATGATGCATCTGCAGCCAGAGTTGCACTAGGAATCACC
ACTGTGCTGACAATGACAACCATCAGCACTCACCTCAGGGAGACCTTGCCAAAGATCCCGTATG
TCAAAGCGATTGATATTTACCTGATGGGTTGCTTTGTGTTTGTGTTCCTGGCTCTGCTGGAATA
TGCCTTTGTAAATTACATCTTCTTTGGAAAAGGCCCTCAGAAAAAGGGAGCTAGCAAACAAGAC
CAGAGCGCCAATGAAAAGAACAAACTGGAGATGAATAAAGTTCAGGTGGACGCGCACGGCAACA
TCCTGCTGAGCGCCCTGGAGCTGCGGACCGAGGCGAGCGGCTCCGAGGTGCTGACGGGCGCCAG
CGAGCCCCAGGCGGCCGGCGTGTTCGCCTTCGACAGCGCCAGCGTCCAGTTCCGCCGGCCGCTC
AGCAGCCGCGACGCCTACGGCCGCGCCCCCGACCGGCTGGGCGCGCACGGCAAGGGCCGCATCC
GGCGGCGGGCGTCGCAGCTCAAGGTCAAGATCCCCGACCTGACGGACGTGAACTCCATAGACAA
GTGGTCCCGAATGTTCTTCCCCATCACCTTCTCCCTCTTTAACGTCGTCTACTGGCTTTACTAT
GTCCACTGAGGGGCGGCCCGGCGGCCCGGGTCACGCGCGCCCGCGCCT

hide sequence

RefSeq Acc Id:

XM_038493698 ⟹ XP_038349626

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	43,276,394 - 43,634,374 (+)	NCBI

RefSeq Acc Id:

XM_038493699 ⟹ XP_038349627

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	43,276,378 - 43,634,632 (+)	NCBI

RefSeq Acc Id:

XM_038493700 ⟹ XP_038349628

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	43,295,985 - 43,634,379 (+)	NCBI

RefSeq Acc Id:

XM_038493701 ⟹ XP_038349629

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	43,295,649 - 43,634,625 (+)	NCBI

RefSeq Acc Id:

XM_038556011 ⟹ XP_038411939

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	43,691,495 - 44,049,496 (+)	NCBI

RefSeq Acc Id:

XM_038556012 ⟹ XP_038411940

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	43,691,479 - 44,049,754 (+)	NCBI

RefSeq Acc Id:

XM_038556013 ⟹ XP_038411941

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	43,710,998 - 44,049,501 (+)	NCBI

RefSeq Acc Id:

XM_038556014 ⟹ XP_038411942

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	43,710,662 - 44,049,747 (+)	NCBI

RefSeq Acc Id:

XM_038685555 ⟹ XP_038541483

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	43,598,400 - 43,955,174 (+)	NCBI

RefSeq Acc Id:

XM_038685556 ⟹ XP_038541484

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	43,598,384 - 43,955,432 (+)	NCBI

RefSeq Acc Id:

XM_038685557 ⟹ XP_038541485

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	43,616,231 - 43,955,179 (+)	NCBI

RefSeq Acc Id:

XM_038685558 ⟹ XP_038541486

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	43,615,895 - 43,955,425 (+)	NCBI

RefSeq Acc Id:

XM_038688595 ⟹ XP_038544523

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	13	42,942,649 - 43,300,057 (+)	NCBI

RefSeq Acc Id:

XM_038688604 ⟹ XP_038544532

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	13	42,942,633 - 43,300,315 (+)	NCBI

RefSeq Acc Id:

XM_038688618 ⟹ XP_038544546

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	13	42,961,720 - 43,300,308 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005628215	(Get FASTA)	NCBI Sequence Viewer
	XP_038349626	(Get FASTA)	NCBI Sequence Viewer
	XP_038349627	(Get FASTA)	NCBI Sequence Viewer
	XP_038349628	(Get FASTA)	NCBI Sequence Viewer
	XP_038349629	(Get FASTA)	NCBI Sequence Viewer
	XP_038411939	(Get FASTA)	NCBI Sequence Viewer
	XP_038411940	(Get FASTA)	NCBI Sequence Viewer
	XP_038411941	(Get FASTA)	NCBI Sequence Viewer
	XP_038411942	(Get FASTA)	NCBI Sequence Viewer
	XP_038541483	(Get FASTA)	NCBI Sequence Viewer
	XP_038541484	(Get FASTA)	NCBI Sequence Viewer
	XP_038541485	(Get FASTA)	NCBI Sequence Viewer
	XP_038541486	(Get FASTA)	NCBI Sequence Viewer
	XP_038544523	(Get FASTA)	NCBI Sequence Viewer
	XP_038544532	(Get FASTA)	NCBI Sequence Viewer
	XP_038544546	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000002776.5
	ENSCAFP00040039785.1
	ENSCAFP00040039799.1
	ENSCAFP00845011701
	ENSCAFP00845011701.1

RefSeq Acc Id:	XP_005628215 ⟸ XM_005628158
- Peptide Label:	isoform X3
- UniProtKB:	F1PEG2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYFQQSWKDKRLSYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTV LYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSI VDYKMVSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVA LGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQKKGA SKQDQSANEKNKLEMNKVQVDAHGNILLSALELRTEASGSEVLTGASEPQAAGVFAFDSASVQF RRPLSSRDAYGRAPDRLGAHGKGRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNVVY WLYYVH hide sequence

Ensembl Acc Id:

ENSCAFP00000002776 ⟸ ENSCAFT00000002993

RefSeq Acc Id:	XP_038349627 ⟸ XM_038493699
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038349626 ⟸ XM_038493698
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038349629 ⟸ XM_038493701
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038349628 ⟸ XM_038493700
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038541484 ⟸ XM_038685556
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038541483 ⟸ XM_038685555
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TSB9 (UniProtKB/TrEMBL), A0A8I3MZR1 (UniProtKB/TrEMBL), A0A8C0Z659 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038541486 ⟸ XM_038685558
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038541485 ⟸ XM_038685557
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038544532 ⟸ XM_038688604
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038544523 ⟸ XM_038688595
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TSB9 (UniProtKB/TrEMBL), A0A8I3MZR1 (UniProtKB/TrEMBL), A0A8C0Z659 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038544546 ⟸ XM_038688618
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038411940 ⟸ XM_038556012
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038411939 ⟸ XM_038556011
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TSB9 (UniProtKB/TrEMBL), A0A8C0Z659 (UniProtKB/TrEMBL), A0A8I3MZR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038411942 ⟸ XM_038556014
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038411941 ⟸ XM_038556013
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSCAFP00845011701 ⟸ ENSCAFT00845015078

Protein Domains

Neurotransmitter-gated ion-channel ligand-binding Neurotransmitter-gated ion-channel transmembrane

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000001889	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040024473	UniProtKB/TrEMBL
	ENSCAFG00845008573	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000002993.5	UniProtKB/TrEMBL
	ENSCAFT00040045570.1	UniProtKB/TrEMBL
	ENSCAFT00040045584.1	UniProtKB/TrEMBL
	ENSCAFT00845015078	ENTREZGENE
	ENSCAFT00845015078.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.390	UniProtKB/TrEMBL
	2.70.170.10	UniProtKB/TrEMBL
InterPro	GABAA/Glycine_rcpt	UniProtKB/TrEMBL
	GABAAb_rcpt	UniProtKB/TrEMBL
	Neur_chan_lig-bd	UniProtKB/TrEMBL
	Neur_chan_lig-bd_sf	UniProtKB/TrEMBL
	Neur_channel	UniProtKB/TrEMBL
	Neuro-gated_channel_TM_sf	UniProtKB/TrEMBL
	Neuro_actylchol_rec	UniProtKB/TrEMBL
	Neurotrans-gated_channel_TM	UniProtKB/TrEMBL
	Neurotransmitter_ion_chnl_CS	UniProtKB/TrEMBL
NCBI Gene	GABRB1	ENTREZGENE
PANTHER	GAMMA-AMINOBUTYRIC ACID RECEPTOR SUBUNIT BETA-1	UniProtKB/TrEMBL
	PTHR18945	UniProtKB/TrEMBL
Pfam	Neur_chan_LBD	UniProtKB/TrEMBL
	Neur_chan_memb	UniProtKB/TrEMBL
PRINTS	GABAARBETA	UniProtKB/TrEMBL
	GABAARECEPTR	UniProtKB/TrEMBL
	NRIONCHANNEL	UniProtKB/TrEMBL
PROSITE	NEUROTR_ION_CHANNEL	UniProtKB/TrEMBL
Superfamily-SCOP	SSF63712	UniProtKB/TrEMBL
	SSF90112	UniProtKB/TrEMBL
UniProt	A0A8C0TSB9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Z659	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MZR1	ENTREZGENE, UniProtKB/TrEMBL
	F1PEG2	ENTREZGENE
VGNC ID	VGNC:41058	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-05-11	GABRB1	gamma-aminobutyric acid type A receptor subunit beta1	GABRB1	gamma-aminobutyric acid type A receptor beta1 subunit	Symbol and/or name change	19259463	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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