MIR885 (microRNA mir-885) - Rat Genome Database

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Gene: MIR885 (microRNA mir-885) Canis lupus familiaris
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Symbol: MIR885
Name: microRNA mir-885 (Ensembl:microRNA 885)
RGD ID: 12382808
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-885; microRNA 885
RGD Orthologs
Human
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1207,968,529 - 7,968,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl207,968,529 - 7,968,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,003,162 - 8,003,235 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0207,998,461 - 7,998,534 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl207,998,461 - 7,998,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1207,720,406 - 7,720,479 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,066,318 - 8,066,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,039,953 - 8,040,026 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:18215311  


Genomics

Comparative Map Data
MIR885
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1207,968,529 - 7,968,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl207,968,529 - 7,968,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,003,162 - 8,003,235 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0207,998,461 - 7,998,534 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl207,998,461 - 7,998,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1207,720,406 - 7,720,479 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,066,318 - 8,066,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,039,953 - 8,040,026 (+)NCBIUU_Cfam_GSD_1.0
MIR885
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38310,394,489 - 10,394,562 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl310,394,489 - 10,394,562 (-)EnsemblGRCh38hg38GRCh38
GRCh37310,436,173 - 10,436,246 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36310,411,172 - 10,411,245 (-)NCBINCBI36Build 36hg18NCBI36
Celera310,371,636 - 10,371,709 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef310,370,949 - 10,371,022 (-)NCBIHuRef
CHM1_1310,386,240 - 10,386,313 (-)NCBICHM1_1
T2T-CHM13v2.0310,388,823 - 10,388,896 (-)NCBIT2T-CHM13v2.0
MIR885
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,597,531 - 66,597,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11366,597,531 - 66,597,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium
Low 1
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000040858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl207,968,529 - 7,968,602 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl207,998,461 - 7,998,534 (+)Ensembl
RefSeq Acc Id: NR_049521
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1207,968,529 - 7,968,602 (+)NCBI
Dog10K_Boxer_Tasha208,003,162 - 8,003,235 (+)NCBI
ROS_Cfam_1.0207,998,461 - 7,998,534 (+)NCBI
UMICH_Zoey_3.1207,720,406 - 7,720,479 (+)NCBI
UNSW_CanFamBas_1.0208,066,318 - 8,066,391 (+)NCBI
UU_Cfam_GSD_1.0208,039,953 - 8,040,026 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000026575 Ensembl
  ENSCAFG00845007684 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845013517 ENTREZGENE
miRBase MI0010432 ENTREZGENE
NCBI Gene MIR885 ENTREZGENE
RNAcentral URS0000246356 RNACentral
  URS00002EFA21 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR885  microRNA mir-885    microRNA 885  Symbol and/or name change 5135510 APPROVED