LTA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 12 | 1,070,608 - 1,073,053 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 12 | 1,071,192 - 1,073,067 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 12 | 1,207,912 - 1,208,854 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 12 | 1,215,963 - 1,218,298 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 12 | 1,216,437 - 1,217,676 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 12 | 1,075,453 - 1,076,395 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 12 | 1,143,379 - 1,144,321 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 12 | 1,210,162 - 1,211,104 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
LTA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 6 | 31,560,610 - 31,574,324 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 31,572,054 - 31,574,324 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 31,539,876 - 31,542,101 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 31,648,072 - 31,650,077 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 6 | 31,648,071 - 31,650,077 | NCBI | | | | | Celera | 6 | 33,138,091 - 33,140,313 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | p21.33 | NCBI | | | | | HuRef | 6 | 31,326,608 - 31,328,835 (+) | NCBI | | HuRef | | | CHM1_1 | 6 | 31,542,008 - 31,544,233 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 31,424,599 - 31,427,376 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Lta (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 17 | 35,422,141 - 35,424,568 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 17 | 35,422,141 - 35,424,327 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 17 | 35,203,165 - 35,205,578 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 17 | 35,203,165 - 35,205,351 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 17 | 35,340,110 - 35,342,296 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 17 | 34,811,215 - 34,813,235 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 17 | 38,299,868 - 38,302,049 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | B1 | NCBI | | | | | cM Map | 17 | 18.59 | NCBI | | | | |
|
Lta (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 20 | 3,622,291 - 3,625,852 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 20 | 3,618,853 - 3,621,324 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 20 | 3,618,853 - 3,620,859 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 20 | 4,318,695 - 4,320,726 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 20 | 3,680,759 - 3,682,786 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 20 | 4,218,329 - 4,220,348 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 20 | 4,851,889 - 4,854,677 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 20 | 4,852,496 - 4,854,677 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 20 | 6,932,260 - 6,935,077 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 20 | 3,657,842 - 3,659,848 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 20 | 3,658,068 - 3,660,075 (+) | NCBI | | | | | Celera | 20 | 4,404,630 - 4,406,751 (-) | NCBI | | Celera | | | Cytogenetic Map | 20 | p12 | NCBI | | | | |
|
Lta (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955437 | 114,640 - 115,529 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955437 | 114,216 - 116,003 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
LTA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 5 | 46,049,233 - 46,051,266 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 42,011,243 - 42,012,833 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 31,233,411 - 31,235,409 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 32,123,353 - 32,125,375 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 32,123,353 - 32,125,375 (+) | Ensembl | panpan1.1 | | panPan2 | |
|
Lta (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404946 | 35,620,316 - 35,621,609 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936727 | 1,940,081 - 1,941,022 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936727 | 1,940,081 - 1,941,022 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
LTA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 7 | 23,696,040 - 23,698,299 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 7 | 23,696,387 - 23,698,280 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 7 | 27,553,733 - 27,555,627 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | | Pig Cytomap | 7 | p11-q11 | NCBI | | | | |
|
LTA (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Vero_WHO_p1.0 | NW_023666044 | 31,473,740 - 31,476,648 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Lta (Heterocephalus glaber - naked mole-rat) |
|