ATG9B (autophagy related 9B) - Rat Genome Database

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Gene: ATG9B (autophagy related 9B) Canis lupus familiaris
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Symbol: ATG9B
Name: autophagy related 9B
RGD ID: 12381187
Description: INVOLVED IN autophagosome assembly (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH genetic disease (ortholog); lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATG9 autophagy related 9 homolog B; autophagy-related protein 9B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,072,436 - 15,082,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,072,312 - 15,080,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,680,763 - 15,688,684 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,794,726 - 16,802,656 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,795,686 - 16,802,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,167,172 - 15,175,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,748,627 - 15,756,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,799,326 - 15,807,261 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ATG9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,072,436 - 15,082,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,072,312 - 15,080,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,680,763 - 15,688,684 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,794,726 - 16,802,656 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,795,686 - 16,802,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,167,172 - 15,175,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,748,627 - 15,756,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,799,326 - 15,807,261 (-)NCBIUU_Cfam_GSD_1.0
ATG9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,012,209 - 151,024,499 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,012,209 - 151,024,499 (-)EnsemblGRCh38hg38GRCh38
GRCh377150,709,297 - 150,721,586 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,340,233 - 150,352,519 (-)NCBINCBI36Build 36hg18NCBI36
Build 347150,146,953 - 150,159,234NCBI
Celera7145,266,630 - 145,278,919 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,521,635 - 144,533,925 (-)NCBIHuRef
CHM1_17150,717,703 - 150,729,992 (-)NCBICHM1_1
T2T-CHM13v2.07152,185,332 - 152,201,351 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,038,886 - 150,051,176 (-)NCBI
Atg9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,589,179 - 24,597,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,589,179 - 24,597,141 (-)EnsemblGRCm39 Ensembl
GRCm38524,384,181 - 24,392,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,384,181 - 24,392,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37523,889,999 - 23,897,961 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36523,894,246 - 23,902,208 (-)NCBIMGSCv36mm8
Celera521,333,933 - 21,341,895 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.49NCBI
Atg9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,678,548 - 11,686,097 (+)NCBIGRCr8
mRatBN7.2410,784,934 - 10,793,832 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,786,114 - 10,793,651 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,932,374 - 15,939,036 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,752,565 - 11,759,227 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0410,104,349 - 10,111,011 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,314,369 - 7,322,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,314,369 - 7,321,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,325,733 - 7,332,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.446,151,128 - 6,157,788 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera46,400,691 - 6,407,351 (+)NCBICelera
Cytogenetic Map4q11NCBI
Atg9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,458,398 - 5,465,551 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,458,152 - 5,467,260 (-)NCBIChiLan1.0ChiLan1.0
ATG9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,435,449 - 187,449,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,445,713 - 39,459,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,600,894 - 142,614,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,752,882 - 154,764,744 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,756,535 - 154,764,744 (-)Ensemblpanpan1.1panPan2
Atg9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,447,684 - 6,459,777 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,446,667 - 6,453,511 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,445,824 - 6,453,582 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,200,639 - 6,208,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,200,246 - 6,208,988 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,570,334 - 6,579,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,197,387 - 119,209,578 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,198,125 - 119,206,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,164,824 - 15,177,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,591,297 - 5,598,739 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,589,366 - 5,600,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATG9B
128 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00000062956   ⟹   ENSCAFP00000051011
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1615,072,312 - 15,080,397 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845017982   ⟹   ENSCAFP00845014009
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1616,795,686 - 16,802,641 (-)Ensembl
RefSeq Acc Id: XM_038452479   ⟹   XP_038308407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,680,763 - 15,688,684 (-)NCBI
RefSeq Acc Id: XM_038497291   ⟹   XP_038353219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11615,167,172 - 15,175,100 (-)NCBI
RefSeq Acc Id: XM_038559716   ⟹   XP_038415644
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,799,326 - 15,807,261 (-)NCBI
RefSeq Acc Id: XM_038623714   ⟹   XP_038479642
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,748,627 - 15,756,553 (-)NCBI
RefSeq Acc Id: XM_038689476   ⟹   XP_038545404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,794,726 - 16,802,656 (-)NCBI
RefSeq Acc Id: ENSCAFP00000051011   ⟸   ENSCAFT00000062956
RefSeq Acc Id: XP_038353219   ⟸   XM_038497291
RefSeq Acc Id: XP_038479642   ⟸   XM_038623714
RefSeq Acc Id: XP_038545404   ⟸   XM_038689476
- UniProtKB: A0A8C0PF30 (UniProtKB/TrEMBL),   A0A8I3N3R3 (UniProtKB/TrEMBL),   A0A8C0Q3F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308407   ⟸   XM_038452479
- UniProtKB: A0A8C0PF30 (UniProtKB/TrEMBL),   A0A8I3N3R3 (UniProtKB/TrEMBL),   A0A8C0Q3F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415644   ⟸   XM_038559716
- UniProtKB: A0A8C0PF30 (UniProtKB/TrEMBL),   A0A8C0Q3F3 (UniProtKB/TrEMBL),   A0A8I3N3R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845014009   ⟸   ENSCAFT00845017982


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000041918 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030024440 UniProtKB/TrEMBL
  ENSCAFG00040004995 UniProtKB/TrEMBL
  ENSCAFG00845010124 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000062956.2 UniProtKB/TrEMBL
  ENSCAFT00030045020.1 UniProtKB/TrEMBL
  ENSCAFT00040009492.1 UniProtKB/TrEMBL
  ENSCAFT00040009592.1 UniProtKB/TrEMBL
  ENSCAFT00845017982 ENTREZGENE
  ENSCAFT00845017982.1 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_9 UniProtKB/TrEMBL
NCBI Gene ATG9B ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 9B UniProtKB/TrEMBL
  PTHR13038 UniProtKB/TrEMBL
Pfam ATG9 UniProtKB/TrEMBL
UniProt A0A8C0PF30 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q3F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QFX9_CANLF UniProtKB/TrEMBL
  A0A8I3N3R3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111352 ENTREZGENE