CALY (calcyon neuron specific vesicular protein)

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Gene: CALY (calcyon neuron specific vesicular protein) Canis lupus familiaris

Analyze

Symbol:

CALY

Name:

calcyon neuron specific vesicular protein

RGD ID:

12380019

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); positive regulation of clathrin coat assembly (ortholog); positive regulation of endocytosis (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); attention deficit hyperactivity disorder (ortholog); distal 10q deletion syndrome (ortholog); FOUND IN axon (ortholog); cytoplasmic vesicle (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

dopamine receptor D1 interacting protein; DRD1IP; neuron-specific vesicular protein calcyon

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	40,918,341 - 40,925,161 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	40,918,343 - 40,925,070 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	40,973,435 - 40,980,278 (-)	NCBI
ROS_Cfam_1.0	28	41,555,317 - 41,556,483 (-)	NCBI
UMICH_Zoey_3.1	28	41,037,406 - 41,044,244 (-)	NCBI
UNSW_CanFamBas_1.0	28	41,027,020 - 41,033,840 (-)	NCBI
UU_Cfam_GSD_1.0	28	41,429,783 - 41,436,736 (-)	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Disease Models (ISO)

attention deficit hyperactivity disorder (ISO)

distal 10q deletion syndrome (ISO)

Memory Disorders (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde axonal transport (ISO)

clathrin coat assembly (IBA,IEA)

dopamine receptor signaling pathway (IEA)

endosomal transport (IBA)

positive regulation of clathrin coat assembly (ISO)

positive regulation of endocytosis (ISO)

positive regulation of retrograde axon cargo transport (ISO)

postsynaptic neurotransmitter receptor internalization (ISO)

Cellular Component

axon (ISO)

cellular anatomical entity (IEA)

cytoplasmic vesicle (ISO)

endosome (IBA)

glutamatergic synapse (ISO)

integral component of membrane (IBA,IEA)

integral component of plasma membrane (ISO)

membrane (IEA)

postsynaptic endocytic zone (ISO)

Molecular Function

clathrin light chain binding (IBA,IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

References

Genomics

Comparative Map Data

CALY
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	40,918,341 - 40,925,161 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	40,918,343 - 40,925,070 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	40,973,435 - 40,980,278 (-)	NCBI
ROS_Cfam_1.0	28	41,555,317 - 41,556,483 (-)	NCBI
UMICH_Zoey_3.1	28	41,037,406 - 41,044,244 (-)	NCBI
UNSW_CanFamBas_1.0	28	41,027,020 - 41,033,840 (-)	NCBI
UU_Cfam_GSD_1.0	28	41,429,783 - 41,436,736 (-)	NCBI

CALY
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	133,324,072 - 133,336,896 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	10	133,324,072 - 133,336,935 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	135,137,576 - 135,150,400 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	134,988,923 - 135,000,401 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	10	128,367,054 - 128,378,600 (+)	NCBI
Cytogenetic Map	10	q26.3	NCBI
HuRef	10	128,683,130 - 128,686,340 (-)	NCBI		HuRef
CHM1_1	10	135,420,111 - 135,432,452 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	134,278,597 - 134,292,046 (-)	NCBI

Caly
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	139,649,793 - 139,662,485 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	7	139,649,793 - 139,662,461 (-)	Ensembl
GRCm38	7	140,069,880 - 140,082,571 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	140,069,880 - 140,082,548 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	147,255,779 - 147,268,447 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	139,921,207 - 139,933,868 (-)	NCBI			mm8
Celera	7	139,867,978 - 139,880,626 (-)	NCBI		Celera
Cytogenetic Map	7	F4	NCBI

Caly
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	194,862,671 - 194,873,861 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	194,862,672 - 194,873,551 (-)	Ensembl
Rnor_6.0	1	212,537,851 - 212,549,040 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	212,537,848 - 212,549,477 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	219,452,501 - 219,463,690 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	199,869,223 - 199,880,102 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	200,019,215 - 200,030,094 (-)	NCBI
Celera	1	192,539,864 - 192,551,053 (-)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Caly
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	10,983,133 - 10,987,331 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	10,983,602 - 10,993,371 (-)	NCBI	ChiLan1.0	ChiLan1.0

CALY
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	10	134,236,280 - 134,239,613 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	134,235,262 - 134,239,613 (-)	Ensembl	panpan1.1		panPan2

Caly
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	6,089,321 - 6,097,309 (+)	NCBI
SpeTri2.0	NW_004936486	19,463,989 - 19,471,976 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CALY
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	141,307,090 - 141,316,292 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	141,307,092 - 141,316,460 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	153,271,921 - 153,275,710 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CALY
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	53,170,933 - 53,182,147 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	26	53,170,193 - 53,182,136 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666054	41,306,141 - 41,317,478 (-)	NCBI	Vero_WHO_p1.0

Caly
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	13,358,986 - 13,368,967 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624737	13,359,520 - 13,368,948 (+)	NCBI	HetGla_female_1.0		hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High			4						9
Medium			10						3	8	4
Low	5	1	2				3	5			2	1
Below cutoff		4	6	6	6	6	3	1			4	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005637908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005637909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022411755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038439698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCAFT00000021300 ⟹ ENSCAFP00000019779

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	40,918,468 - 40,924,648 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000072173 ⟹ ENSCAFP00000046215

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	40,918,402 - 40,925,070 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000092751 ⟹ ENSCAFP00000063325

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	40,918,343 - 40,925,070 (-)	Ensembl

RefSeq Acc Id:

XM_005637908 ⟹ XP_005637965

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	40,918,341 - 40,925,161 (-)	NCBI
Dog10K_Boxer_Tasha	28	40,973,435 - 40,980,278 (-)	NCBI

Sequence:

show sequence

GCGACAGCAGCCTCGGTCTCGGCTCGGCCCCTCCCCCGCCCCGCCCCGGCTGCGAAGCGTCTGG
AACCGCATCCTTCCTCCGCATCCTCGTCCTGCGGCCGCGCCGTGCAGCAGCTGCCCGTCGGAGC
CGCCTGCCGAGGACCGCTGCTCACCATGGTGAAGCTGGGCTGCAGCTTCTCCGGGAAGCCGGGC
AAAGACCCAGGGGATCAGGACGGGGCCACCACAGACAGCGTCCCTCTCATCAGCCCCCTGGATG
TCAGCCAGCTCCAGCCACCGTTCCCTGACCAGGTGGTTATCAAGACACAGACGGAATACCAGCT
GTCCTCCCCGGACCAGCCAAAGAAGTTCCCCGACCTGGAGGCCCAGAAGCTGGCCTGTAACCAC
CCAGAGGAAGGGCGCAGGCTGCCCACCGCGCGGATGATCGCCTTTGCCATGGCGCTCCTGGGCT
GTGTCCTCATCATGTACAAGGCCATCTGGTATGACCAGTTCACCTGCCCCGACGGCTTCCTGCT
CCGGCACAAGATCTGCACCCCGCTGACCCTGGAGATGTACTACACGGAGATGGACCCCGAGCGC
CACCGAAGCATCCTGGCCGCCATCGGGGCCTACCCGCTGAGCCGCAAGCACGGCACCGAGACGC
CCTCGGCCTGGGGGGAGAACTACCGCGCCGTCAAGGAGGGGCCCAAGGCGCCCACCCAGGCGGG
CGCGGCGGCGGGGGCGGGCGCGGCGGGGGCGGCGGCCACCGAGCCCCCGGGAAAGCCCTCGGCC
CCGGGAGAGAAGGAGGCGCCGCGGAAGGCAGCGGGCAGCGCCCCGCCCCCGGCCCCGGCCCCCC
AGTGACGGCGCCCGCACCTGCGGCCCGGCGCCCCCGGCGGCACCCGTGACCGCCCTCGCCCGAC
GCGCTCCCCTCCTGTGGTCGTGCCCCGCCTCCGGGACCCCTCGCTGATGCCCCTGCCCCCTGAG
CTTCCAGCTCTGCTGCTTTTCTCTAAGTAAAGATTCACATCCAG

hide sequence

RefSeq Acc Id:

XM_005637909 ⟹ XP_005637966

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	40,918,341 - 40,925,116 (-)	NCBI
Dog10K_Boxer_Tasha	28	40,973,435 - 40,980,170 (-)	NCBI

Sequence:

show sequence

CCGGCTGCGAAGCGTCTGGAACCGCATCCTTCCTCCGCATCCTCGTCCTGCGGCCGCGCCGTGC
AGCAGCTGCCCGTCGGAGCCGCCTGTGAGCCATTTCCACATTTCTCCTTGTGGAGCGGGGGCGA
GGGGGGCCGAGTGTGCAGGGGCGTGTGCACGGCCGCGCGAGGTGCGCGTGCAGGTGCGCGTGCA
GGCCGAGGACCGCTGCTCACCATGGTGAAGCTGGGCTGCAGCTTCTCCGGGAAGCCGGGCAAAG
ACCCAGGGGATCAGGACGGGGCCACCACAGACAGCGTCCCTCTCATCAGCCCCCTGGATGTCAG
CCAGCTCCAGCCACCGTTCCCTGACCAGGTGGTTATCAAGACACAGACGGAATACCAGCTGTCC
TCCCCGGACCAGCCAAAGAAGTTCCCCGACCTGGAGGCCCAGAAGCTGGCCTGTAACCACCCAG
AGGAAGGGCGCAGGCTGCCCACCGCGCGGATGATCGCCTTTGCCATGGCGCTCCTGGGCTGTGT
CCTCATCATGTACAAGGCCATCTGGTATGACCAGTTCACCTGCCCCGACGGCTTCCTGCTCCGG
CACAAGATCTGCACCCCGCTGACCCTGGAGATGTACTACACGGAGATGGACCCCGAGCGCCACC
GAAGCATCCTGGCCGCCATCGGGGCCTACCCGCTGAGCCGCAAGCACGGCACCGAGACGCCCTC
GGCCTGGGGGGAGAACTACCGCGCCGTCAAGGAGGGGCCCAAGGCGCCCACCCAGGCGGGCGCG
GCGGCGGGGGCGGGCGCGGCGGGGGCGGCGGCCACCGAGCCCCCGGGAAAGCCCTCGGCCCCGG
GAGAGAAGGAGGCGCCGCGGAAGGCAGCGGGCAGCGCCCCGCCCCCGGCCCCGGCCCCCCAGTG
ACGGCGCCCGCACCTGCGGCCCGGCGCCCCCGGCGGCACCCGTGACCGCCCTCGCCCGACGCGC
TCCCCTCCTGTGGTCGTGCCCCGCCTCCGGGACCCCTCGCTGATGCCCCTGCCCCCTGAGCTTC
CAGCTCTGCTGCTTTTCTCTAAGTAAAGATTCACATCCAG

hide sequence

RefSeq Acc Id:

XM_022411755 ⟹ XP_022267463

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	40,918,341 - 40,923,806 (-)	NCBI
Dog10K_Boxer_Tasha	28	40,973,435 - 40,978,912 (-)	NCBI

Sequence:

show sequence

ATGACGTCACACGGACGTCACGCTCTGTCGGAGGAGGCTCGTCTCCTAGAGGACCCCAGAGGCG
GAGCTACCTGTCCCGGGGCCGGCGGCCGGAGAAGATGACGTAAAACAAACGTGCAACCTGATGA
TTGAAGGCCGAGGACCGCTGCTCACCATGGTGAAGCTGGGCTGCAGCTTCTCCGGGAAGCCGGG
CAAAGACCCAGGGGATCAGGACGGGGCCACCACAGACAGCGTCCCTCTCATCAGCCCCCTGGAT
GTCAGCCAGCTCCAGCCACCGTTCCCTGACCAGGTGGTTATCAAGACACAGACGGAATACCAGC
TGTCCTCCCCGGACCAGCCAAAGAAGTTCCCCGACCTGGAGGCCCAGAAGCTGGCCTGTAACCA
CCCAGAGGAAGGGCGCAGGCTGCCCACCGCGCGGATGATCGCCTTTGCCATGGCGCTCCTGGGC
TGTGTCCTCATCATGTACAAGGCCATCTGGTATGACCAGTTCACCTGCCCCGACGGCTTCCTGC
TCCGGCACAAGATCTGCACCCCGCTGACCCTGGAGATGTACTACACGGAGATGGACCCCGAGCG
CCACCGAAGCATCCTGGCCGCCATCGGGGCCTACCCGCTGAGCCGCAAGCACGGCACCGAGACG
CCCTCGGCCTGGGGGGAGAACTACCGCGCCGTCAAGGAGGGGCCCAAGGCGCCCACCCAGGCGG
GCGCGGCGGCGGGGGCGGGCGCGGCGGGGGCGGCGGCCACCGAGCCCCCGGGAAAGCCCTCGGC
CCCGGGAGAGAAGGAGGCGCCGCGGAAGGCAGCGGGCAGCGCCCCGCCCCCGGCCCCGGCCCCC
CAGTGACGGCGCCCGCACCTGCGGCCCGGCGCCCCCGGCGGCACCCGTGACCGCCCTCGCCCGA
CGCGCTCCCCTCCTGTGGTCGTGCCCCGCCTCCGGGACCCCTCGCTGATGCCCCTGCCCCCTGA
GCTTCCAGCTCTGCTGCTTTTCTCTAAGTAAAGATTCACATCCAG

hide sequence

RefSeq Acc Id:

XM_038439698 ⟹ XP_038295626

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	41,555,317 - 41,556,483 (-)	NCBI

RefSeq Acc Id:

XM_038515590 ⟹ XP_038371518

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	41,037,406 - 41,042,878 (-)	NCBI

RefSeq Acc Id:

XM_038515591 ⟹ XP_038371519

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	41,037,406 - 41,044,244 (-)	NCBI

RefSeq Acc Id:

XM_038515592 ⟹ XP_038371520

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	41,037,406 - 41,044,136 (-)	NCBI

RefSeq Acc Id:

XM_038579194 ⟹ XP_038435122

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	41,429,783 - 41,435,365 (-)	NCBI

RefSeq Acc Id:

XM_038579195 ⟹ XP_038435123

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	41,429,783 - 41,436,736 (-)	NCBI

RefSeq Acc Id:

XM_038579196 ⟹ XP_038435124

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	41,429,783 - 41,436,628 (-)	NCBI

RefSeq Acc Id:

XM_038643431 ⟹ XP_038499359

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	41,027,020 - 41,032,474 (-)	NCBI

RefSeq Acc Id:

XM_038643432 ⟹ XP_038499360

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	41,027,020 - 41,033,840 (-)	NCBI

RefSeq Acc Id:

XM_038643433 ⟹ XP_038499361

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	41,027,020 - 41,033,732 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005637965	(Get FASTA)	NCBI Sequence Viewer
	XP_005637966	(Get FASTA)	NCBI Sequence Viewer
	XP_022267463	(Get FASTA)	NCBI Sequence Viewer
	XP_038295626	(Get FASTA)	NCBI Sequence Viewer
	XP_038371518	(Get FASTA)	NCBI Sequence Viewer
	XP_038371519	(Get FASTA)	NCBI Sequence Viewer
	XP_038371520	(Get FASTA)	NCBI Sequence Viewer
	XP_038435122	(Get FASTA)	NCBI Sequence Viewer
	XP_038435123	(Get FASTA)	NCBI Sequence Viewer
	XP_038435124	(Get FASTA)	NCBI Sequence Viewer
	XP_038499359	(Get FASTA)	NCBI Sequence Viewer
	XP_038499360	(Get FASTA)	NCBI Sequence Viewer
	XP_038499361	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_005637965 ⟸ XM_005637908
- Peptide Label:	isoform X9
- UniProtKB:	E2RML3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLGCSFSGKPGKDPGDQDGATTDSVPLISPLDVSQLQPPFPDQVVIKTQTEYQLSSPDQPKK FPDLEAQKLACNHPEEGRRLPTARMIAFAMALLGCVLIMYKAIWYDQFTCPDGFLLRHKICTPL TLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPSAWGENYRAVKEGPKAPTQAGAAAGAGAA GAAATEPPGKPSAPGEKEAPRKAAGSAPPPAPAPQ hide sequence

RefSeq Acc Id:	XP_005637966 ⟸ XM_005637909
- Peptide Label:	isoform X9
- UniProtKB:	E2RML3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLGCSFSGKPGKDPGDQDGATTDSVPLISPLDVSQLQPPFPDQVVIKTQTEYQLSSPDQPKK FPDLEAQKLACNHPEEGRRLPTARMIAFAMALLGCVLIMYKAIWYDQFTCPDGFLLRHKICTPL TLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPSAWGENYRAVKEGPKAPTQAGAAAGAGAA GAAATEPPGKPSAPGEKEAPRKAAGSAPPPAPAPQ hide sequence

RefSeq Acc Id:

XP_022267463 ⟸ XM_022411755

- Peptide Label:

isoform X8

- Sequence:

show sequence

MIEGRGPLLTMVKLGCSFSGKPGKDPGDQDGATTDSVPLISPLDVSQLQPPFPDQVVIKTQTEY
QLSSPDQPKKFPDLEAQKLACNHPEEGRRLPTARMIAFAMALLGCVLIMYKAIWYDQFTCPDGF
LLRHKICTPLTLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPSAWGENYRAVKEGPKAPTQ
AGAAAGAGAAGAAATEPPGKPSAPGEKEAPRKAAGSAPPPAPAPQ

hide sequence

RefSeq Acc Id:

ENSCAFP00000019779 ⟸ ENSCAFT00000021300

RefSeq Acc Id:

ENSCAFP00000063325 ⟸ ENSCAFT00000092751

RefSeq Acc Id:

ENSCAFP00000046215 ⟸ ENSCAFT00000072173

RefSeq Acc Id:	XP_038371519 ⟸ XM_038515591
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038371520 ⟸ XM_038515592
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038371518 ⟸ XM_038515590
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038499360 ⟸ XM_038643432
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038499361 ⟸ XM_038643433
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038499359 ⟸ XM_038643431
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038295626 ⟸ XM_038439698
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038435123 ⟸ XM_038579195
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038435124 ⟸ XM_038579196
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038435122 ⟸ XM_038579194
- Peptide Label:	isoform X6

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013427	Ensembl
	ENSCAFG00030008254	UniProtKB/TrEMBL
	ENSCAFG00845026584	UniProtKB/TrEMBL
Ensembl Protein	ENSCAFP00030013232.1	UniProtKB/TrEMBL
	ENSCAFP00030013283.1	UniProtKB/TrEMBL
	ENSCAFP00845036735.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00030015173.1	UniProtKB/TrEMBL
	ENSCAFT00030015228.1	UniProtKB/TrEMBL
	ENSCAFT00845046837.1	UniProtKB/TrEMBL
InterPro	NSG	UniProtKB/TrEMBL
NCBI Gene	CALY	ENTREZGENE
PANTHER	PTHR28546	UniProtKB/TrEMBL
Pfam	Calcyon	UniProtKB/TrEMBL
PIRSF	Calcyon	UniProtKB/TrEMBL
UniProt	A0A8C0MKS6_CANLF	UniProtKB/TrEMBL
	A0A8C0MUD7_CANLF	UniProtKB/TrEMBL
	A0A8I3S5X9_CANLF	UniProtKB/TrEMBL
	E2RML3	ENTREZGENE
VGNC ID	VGNC:38676	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD