CALY (calcyon neuron specific vesicular protein) - Rat Genome Database

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Gene: CALY (calcyon neuron specific vesicular protein) Canis lupus familiaris
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Symbol: CALY
Name: calcyon neuron specific vesicular protein
RGD ID: 12380019
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); positive regulation of clathrin coat assembly (ortholog); positive regulation of endocytosis (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); attention deficit hyperactivity disorder (ortholog); distal 10q deletion syndrome (ortholog); FOUND IN axon (ortholog); cytoplasmic vesicle (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dopamine receptor D1 interacting protein; DRD1IP; neuron-specific vesicular protein calcyon
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,918,341 - 40,925,161 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,918,343 - 40,925,070 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,973,435 - 40,980,278 (-)NCBI
ROS_Cfam_1.02841,555,317 - 41,556,483 (-)NCBI
UMICH_Zoey_3.12841,037,406 - 41,044,244 (-)NCBI
UNSW_CanFamBas_1.02841,027,020 - 41,033,840 (-)NCBI
UU_Cfam_GSD_1.02841,429,783 - 41,436,736 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CALY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,918,341 - 40,925,161 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,918,343 - 40,925,070 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,973,435 - 40,980,278 (-)NCBI
ROS_Cfam_1.02841,555,317 - 41,556,483 (-)NCBI
UMICH_Zoey_3.12841,037,406 - 41,044,244 (-)NCBI
UNSW_CanFamBas_1.02841,027,020 - 41,033,840 (-)NCBI
UU_Cfam_GSD_1.02841,429,783 - 41,436,736 (-)NCBI
CALY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810133,324,072 - 133,336,896 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl10133,324,072 - 133,336,935 (-)EnsemblGRCh38hg38GRCh38
GRCh3710135,137,576 - 135,150,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,988,923 - 135,000,401 (-)NCBINCBI36hg18NCBI36
Celera10128,367,054 - 128,378,600 (+)NCBI
Cytogenetic Map10q26.3NCBI
HuRef10128,683,130 - 128,686,340 (-)NCBIHuRef
CHM1_110135,420,111 - 135,432,452 (-)NCBICHM1_1
T2T-CHM13v2.010134,278,597 - 134,292,046 (-)NCBI
Caly
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,649,793 - 139,662,485 (-)NCBIGRCm39mm39
GRCm39 Ensembl7139,649,793 - 139,662,461 (-)Ensembl
GRCm387140,069,880 - 140,082,571 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,069,880 - 140,082,548 (-)EnsemblGRCm38mm10GRCm38
MGSCv377147,255,779 - 147,268,447 (-)NCBIGRCm37mm9NCBIm37
MGSCv367139,921,207 - 139,933,868 (-)NCBImm8
Celera7139,867,978 - 139,880,626 (-)NCBICelera
Cytogenetic Map7F4NCBI
Caly
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21194,862,671 - 194,873,861 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1194,862,672 - 194,873,551 (-)Ensembl
Rnor_6.01212,537,851 - 212,549,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,537,848 - 212,549,477 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,452,501 - 219,463,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,869,223 - 199,880,102 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11200,019,215 - 200,030,094 (-)NCBI
Celera1192,539,864 - 192,551,053 (-)NCBICelera
Cytogenetic Map1q41NCBI
Caly
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,983,133 - 10,987,331 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,983,602 - 10,993,371 (-)NCBIChiLan1.0ChiLan1.0
CALY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110134,236,280 - 134,239,613 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,235,262 - 134,239,613 (-)Ensemblpanpan1.1panPan2
Caly
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,089,321 - 6,097,309 (+)NCBI
SpeTri2.0NW_00493648619,463,989 - 19,471,976 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,307,090 - 141,316,292 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,307,092 - 141,316,460 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214153,271,921 - 153,275,710 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,170,933 - 53,182,147 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2653,170,193 - 53,182,136 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605441,306,141 - 41,317,478 (-)NCBIVero_WHO_p1.0
Caly
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,358,986 - 13,368,967 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473713,359,520 - 13,368,948 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 4 9
Medium 10 3 8 4
Low 5 1 2 3 5 2 1
Below cutoff 4 6 6 6 6 3 1 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005637908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005637909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022411755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000021300   ⟹   ENSCAFP00000019779
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2840,918,468 - 40,924,648 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072173   ⟹   ENSCAFP00000046215
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2840,918,402 - 40,925,070 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092751   ⟹   ENSCAFP00000063325
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2840,918,343 - 40,925,070 (-)Ensembl
RefSeq Acc Id: XM_005637908   ⟹   XP_005637965
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12840,918,341 - 40,925,161 (-)NCBI
Dog10K_Boxer_Tasha2840,973,435 - 40,980,278 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005637909   ⟹   XP_005637966
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12840,918,341 - 40,925,116 (-)NCBI
Dog10K_Boxer_Tasha2840,973,435 - 40,980,170 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022411755   ⟹   XP_022267463
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12840,918,341 - 40,923,806 (-)NCBI
Dog10K_Boxer_Tasha2840,973,435 - 40,978,912 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038439698   ⟹   XP_038295626
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02841,555,317 - 41,556,483 (-)NCBI
RefSeq Acc Id: XM_038515590   ⟹   XP_038371518
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12841,037,406 - 41,042,878 (-)NCBI
RefSeq Acc Id: XM_038515591   ⟹   XP_038371519
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12841,037,406 - 41,044,244 (-)NCBI
RefSeq Acc Id: XM_038515592   ⟹   XP_038371520
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12841,037,406 - 41,044,136 (-)NCBI
RefSeq Acc Id: XM_038579194   ⟹   XP_038435122
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02841,429,783 - 41,435,365 (-)NCBI
RefSeq Acc Id: XM_038579195   ⟹   XP_038435123
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02841,429,783 - 41,436,736 (-)NCBI
RefSeq Acc Id: XM_038579196   ⟹   XP_038435124
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02841,429,783 - 41,436,628 (-)NCBI
RefSeq Acc Id: XM_038643431   ⟹   XP_038499359
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02841,027,020 - 41,032,474 (-)NCBI
RefSeq Acc Id: XM_038643432   ⟹   XP_038499360
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02841,027,020 - 41,033,840 (-)NCBI
RefSeq Acc Id: XM_038643433   ⟹   XP_038499361
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02841,027,020 - 41,033,732 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005637965   ⟸   XM_005637908
- Peptide Label: isoform X9
- UniProtKB: E2RML3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005637966   ⟸   XM_005637909
- Peptide Label: isoform X9
- UniProtKB: E2RML3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022267463   ⟸   XM_022411755
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSCAFP00000019779   ⟸   ENSCAFT00000021300
RefSeq Acc Id: ENSCAFP00000063325   ⟸   ENSCAFT00000092751
RefSeq Acc Id: ENSCAFP00000046215   ⟸   ENSCAFT00000072173
RefSeq Acc Id: XP_038371519   ⟸   XM_038515591
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038371520   ⟸   XM_038515592
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038371518   ⟸   XM_038515590
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038499360   ⟸   XM_038643432
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038499361   ⟸   XM_038643433
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038499359   ⟸   XM_038643431
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038295626   ⟸   XM_038439698
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038435123   ⟸   XM_038579195
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038435124   ⟸   XM_038579196
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038435122   ⟸   XM_038579194
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013427 Ensembl
  ENSCAFG00030008254 UniProtKB/TrEMBL
  ENSCAFG00845026584 UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030013232.1 UniProtKB/TrEMBL
  ENSCAFP00030013283.1 UniProtKB/TrEMBL
  ENSCAFP00845036735.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030015173.1 UniProtKB/TrEMBL
  ENSCAFT00030015228.1 UniProtKB/TrEMBL
  ENSCAFT00845046837.1 UniProtKB/TrEMBL
InterPro NSG UniProtKB/TrEMBL
NCBI Gene CALY ENTREZGENE
PANTHER PTHR28546 UniProtKB/TrEMBL
Pfam Calcyon UniProtKB/TrEMBL
PIRSF Calcyon UniProtKB/TrEMBL
UniProt A0A8C0MKS6_CANLF UniProtKB/TrEMBL
  A0A8C0MUD7_CANLF UniProtKB/TrEMBL
  A0A8I3S5X9_CANLF UniProtKB/TrEMBL
  E2RML3 ENTREZGENE
VGNC ID VGNC:38676 ENTREZGENE