CNTN2 (contactin 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CNTN2 (contactin 2) Canis lupus familiaris
Analyze
Symbol: CNTN2
Name: contactin 2
RGD ID: 12378909
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); cell adhesion mediator activity (inferred); INVOLVED IN axonogenesis (ortholog); cell-matrix adhesion (ortholog); protein localization to juxtaparanode region of axon (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: contactin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,570,598 - 1,600,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,576,898 - 1,596,621 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,661,917 - 1,694,727 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,564,191 - 1,597,016 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl381,563,948 - 1,596,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1381,560,461 - 1,593,270 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,951,695 - 1,980,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,151,770 - 2,184,597 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CNTN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,570,598 - 1,600,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,576,898 - 1,596,621 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,661,917 - 1,694,727 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,564,191 - 1,597,016 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl381,563,948 - 1,596,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1381,560,461 - 1,593,270 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,951,695 - 1,980,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,151,770 - 2,184,597 (+)NCBIUU_Cfam_GSD_1.0
CNTN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,042,949 - 205,078,289 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,042,937 - 205,078,289 (+)EnsemblGRCh38hg38GRCh38
GRCh371205,012,077 - 205,047,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,278,963 - 203,313,761 (+)NCBINCBI36Build 36hg18NCBI36
Build 341201,743,996 - 201,778,793NCBI
Celera1178,147,407 - 178,182,200 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,177,847 - 176,212,673 (+)NCBIHuRef
CHM1_11206,435,687 - 206,470,502 (+)NCBICHM1_1
T2T-CHM13v2.01204,307,317 - 204,342,659 (+)NCBIT2T-CHM13v2.0
Cntn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,437,163 - 132,470,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,437,165 - 132,470,994 (-)EnsemblGRCm39 Ensembl
GRCm381132,509,425 - 132,543,251 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,509,427 - 132,543,256 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,406,002 - 134,439,517 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,336,973 - 134,370,462 (-)NCBIMGSCv36mm8
Celera1135,118,092 - 135,152,003 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.42NCBI
Cntn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,497,269 - 46,528,112 (-)NCBIGRCr8
mRatBN7.21343,942,868 - 43,975,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,947,265 - 43,975,887 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,554,249 - 46,582,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,842,379 - 47,871,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,103,086 - 45,131,717 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,280,913 - 49,314,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,285,310 - 49,313,940 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,356,315 - 54,389,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,399,915 - 45,428,789 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,413,957 - 45,442,832 (-)NCBI
Celera1344,281,845 - 44,310,387 (-)NCBICelera
Cytogenetic Map13q13NCBI
Cntn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540640,831,850 - 40,858,569 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540640,831,897 - 40,862,445 (+)NCBIChiLan1.0ChiLan1.0
CNTN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,298,727 - 44,333,562 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,264,002 - 44,298,806 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,645,259 - 180,680,081 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,931,902 - 184,966,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,931,497 - 184,966,482 (+)Ensemblpanpan1.1panPan2
Cntn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934470,057,146 - 70,080,384 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365577,297,422 - 7,320,846 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365577,297,429 - 7,320,666 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,736,740 - 65,776,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,737,488 - 65,776,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CNTN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,262,092 - 24,296,740 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,261,651 - 24,296,850 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,018,404 - 25,053,686 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cntn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,056,339 - 6,073,588 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,052,591 - 6,080,421 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CNTN2
490 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022415311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000037921   ⟹   ENSCAFP00000033568
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl381,576,898 - 1,596,621 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845044957   ⟹   ENSCAFP00845035232
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl381,563,948 - 1,596,983 (+)Ensembl
RefSeq Acc Id: XM_038448290   ⟹   XP_038304218
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0381,564,191 - 1,597,016 (+)NCBI
RefSeq Acc Id: XM_038448291   ⟹   XP_038304219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0381,564,741 - 1,597,016 (+)NCBI
RefSeq Acc Id: XM_038463928   ⟹   XP_038319856
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha381,661,917 - 1,694,727 (+)NCBI
RefSeq Acc Id: XM_038463930   ⟹   XP_038319858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha381,662,467 - 1,694,727 (+)NCBI
RefSeq Acc Id: XM_038522224   ⟹   XP_038378152
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1381,560,470 - 1,593,270 (+)NCBI
RefSeq Acc Id: XM_038522225   ⟹   XP_038378153
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1381,560,461 - 1,593,270 (+)NCBI
RefSeq Acc Id: XM_038522226   ⟹   XP_038378154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1381,561,022 - 1,593,270 (+)NCBI
RefSeq Acc Id: XM_038586010   ⟹   XP_038441938
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0382,151,770 - 2,184,597 (+)NCBI
RefSeq Acc Id: XM_038650428   ⟹   XP_038506356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0381,951,704 - 1,980,625 (+)NCBI
RefSeq Acc Id: XM_038650429   ⟹   XP_038506357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0381,951,695 - 1,980,625 (+)NCBI
RefSeq Acc Id: XM_038650430   ⟹   XP_038506358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0381,952,256 - 1,980,625 (+)NCBI
Ensembl Acc Id: ENSCAFP00000033568   ⟸   ENSCAFT00000037921
RefSeq Acc Id: XP_038378153   ⟸   XM_038522225
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378152   ⟸   XM_038522224
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378154   ⟸   XM_038522226
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038506357   ⟸   XM_038650429
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038506356   ⟸   XM_038650428
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038506358   ⟸   XM_038650430
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038304218   ⟸   XM_038448290
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SUJ1 (UniProtKB/TrEMBL),   A0A8I3Q6Z5 (UniProtKB/TrEMBL),   A0A8C0JYN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038304219   ⟸   XM_038448291
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SUJ1 (UniProtKB/TrEMBL),   A0A8I3Q6Z5 (UniProtKB/TrEMBL),   A0A8C0JYN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319856   ⟸   XM_038463928
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SUJ1 (UniProtKB/TrEMBL),   A0A8I3Q6Z5 (UniProtKB/TrEMBL),   A0A8C0JYN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319858   ⟸   XM_038463930
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SUJ1 (UniProtKB/TrEMBL),   A0A8I3Q6Z5 (UniProtKB/TrEMBL),   A0A8C0JYN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441938   ⟸   XM_038586010
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JYN6 (UniProtKB/TrEMBL),   A0A8C0SUJ1 (UniProtKB/TrEMBL),   A0A8I3Q6Z5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845035232   ⟸   ENSCAFT00845044957
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024609 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040016658 UniProtKB/TrEMBL
  ENSCAFG00845025464 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000037921.4 UniProtKB/TrEMBL
  ENSCAFT00040030766.1 UniProtKB/TrEMBL
  ENSCAFT00040030884.1 UniProtKB/TrEMBL
  ENSCAFT00845044957 ENTREZGENE
  ENSCAFT00845044957.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Contactin-1_2_Ig1 UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene CNTN2 ENTREZGENE
PANTHER CONTACTIN-2 UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C0JYN6 ENTREZGENE
  A0A8C0SUJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z032_CANLF UniProtKB/TrEMBL
  A0A8I3Q6Z5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39433 ENTREZGENE