FOXN4 (forkhead box N4) - Rat Genome Database
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Gene: FOXN4 (forkhead box N4) Canis lupus familiaris
Analyze
Symbol: FOXN4
Name: forkhead box N4
RGD ID: 12378656
Description: ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cell differentiation (ortholog); neuron fate commitment (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: forkhead box protein N4; LOW QUALITY PROTEIN: forkhead box protein N4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2617,728,878 - 17,755,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12617,730,638 - 17,757,173 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISO)

References

Genomics

Comparative Map Data
FOXN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2617,728,878 - 17,755,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12617,730,638 - 17,757,173 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
FOXN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12109,277,978 - 109,309,284 (-)EnsemblGRCh38hg38GRCh38
GRCh3812109,277,978 - 109,309,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712109,715,783 - 109,747,025 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh3712109,715,783 - 109,747,089 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,200,167 - 108,231,408 (-)NCBINCBI36hg18NCBI36
Celera12109,340,232 - 109,371,435 (-)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12106,733,988 - 106,765,245 (-)NCBIHuRef
CHM1_112109,683,689 - 109,714,932 (-)NCBICHM1_1
Foxn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,392,225 - 114,412,486 (-)NCBIGRCm39mm39
GRCm385114,254,164 - 114,274,418 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,254,164 - 114,273,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,704,173 - 114,723,770 (-)NCBIGRCm37mm9NCBIm37
MGSCv365114,515,163 - 114,534,760 (-)NCBImm8
Celera5111,360,917 - 111,380,534 (-)NCBICelera
Cytogenetic Map5FNCBI
Foxn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21242,336,706 - 42,359,932 (+)NCBI
Rnor_6.0 Ensembl1248,101,673 - 48,121,270 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01248,101,012 - 48,121,281 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01249,887,275 - 49,907,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,372,586 - 43,381,544 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11243,232,259 - 43,243,592 (+)NCBI
Celera1243,948,971 - 43,969,762 (+)NCBICelera
Cytogenetic Map12q16NCBI
Foxn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554559,183,475 - 9,210,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554559,182,405 - 9,210,365 (+)NCBIChiLan1.0ChiLan1.0
FOXN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112110,250,547 - 110,280,876 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,251,449 - 110,280,025 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012106,855,308 - 106,886,508 (-)NCBIMhudiblu_PPA_v0panPan3
Foxn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367691,061,907 - 1,081,350 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11441,589,128 - 41,614,488 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,135,477 - 44,145,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXN4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,499,654 - 104,536,338 (-)NCBI
ChlSab1.1 Ensembl11104,499,633 - 104,534,275 (-)Ensembl
Foxn4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474711,122,463 - 11,149,505 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 3 3 2 4 1
Below cutoff 5 5 19 6 5 6 6 6 8 6 6 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000017359   ⟹   ENSCAFP00000016069
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2617,728,878 - 17,755,602 (+)Ensembl
RefSeq Acc Id: XM_022410511   ⟹   XP_022266219
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12617,740,169 - 17,757,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_543440   ⟹   XP_543440
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12617,730,638 - 17,755,602 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_543440   ⟸   XM_543440
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022266219   ⟸   XM_022410511
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000016069   ⟸   ENSCAFT00000017359
Protein Domains
Fork-head

Promoters
RGD ID:13687945
Promoter ID:EPDNEW_C6013
Type:single initiation site
Name:FOXN4_1
Description:forkhead box N4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12617,729,532 - 17,729,592EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010915 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000016069 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017359 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene FOXN4 ENTREZGENE
Pfam Forkhead UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt E2R919_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40962 ENTREZGENE