HCN4 (hyperpolarization activated cyclic nucleotide gated potassium channel 4) - Rat Genome Database

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Gene: HCN4 (hyperpolarization activated cyclic nucleotide gated potassium channel 4) Canis lupus familiaris
Analyze
Symbol: HCN4
Name: hyperpolarization activated cyclic nucleotide gated potassium channel 4
RGD ID: 12375578
Description: ENCODES a protein that exhibits identical protein binding (inferred); intracellular cAMP-activated cation channel activity (inferred); monoatomic ion channel activity (inferred); INVOLVED IN cellular response to aldosterone (ortholog); in utero embryonic development (ortholog); monoatomic cation transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); HCN channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cardiac hyperpolarization-activated current subunit 4; potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13036,637,492 - 36,656,194 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3036,639,908 - 36,656,406 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3036,573,522 - 36,617,524 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03036,844,740 - 36,888,776 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3036,844,723 - 36,889,181 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13036,796,738 - 36,840,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03036,822,594 - 36,866,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,078,286 - 37,122,259 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:15914112   PMID:25404650  


Genomics

Comparative Map Data
HCN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13036,637,492 - 36,656,194 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3036,639,908 - 36,656,406 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3036,573,522 - 36,617,524 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03036,844,740 - 36,888,776 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3036,844,723 - 36,889,181 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13036,796,738 - 36,840,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03036,822,594 - 36,866,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,078,286 - 37,122,259 (-)NCBIUU_Cfam_GSD_1.0
HCN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381573,319,859 - 73,368,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1573,319,859 - 73,368,958 (-)EnsemblGRCh38hg38GRCh38
GRCh371573,612,200 - 73,661,299 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361571,400,988 - 71,448,230 (-)NCBINCBI36Build 36hg18NCBI36
Build 341571,400,987 - 71,448,230NCBI
Celera1550,490,801 - 50,540,207 (-)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1550,443,643 - 50,492,812 (-)NCBIHuRef
CHM1_11573,730,167 - 73,779,572 (-)NCBICHM1_1
T2T-CHM13v2.01571,136,994 - 71,186,091 (-)NCBIT2T-CHM13v2.0
Hcn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,730,232 - 58,770,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl958,730,695 - 58,770,458 (+)EnsemblGRCm39 Ensembl
GRCm38958,822,949 - 58,863,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,823,412 - 58,863,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv37958,671,319 - 58,708,762 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36958,621,649 - 58,659,092 (+)NCBIMGSCv36mm8
Celera956,052,112 - 56,089,597 (+)NCBICelera
Cytogenetic Map9BNCBI
Hcn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2859,222,206 - 59,259,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl859,221,653 - 59,259,639 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx864,753,125 - 64,790,548 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0863,030,680 - 63,068,103 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0860,895,392 - 60,932,815 (+)NCBIRnor_WKY
Rnor_6.0863,599,907 - 63,637,327 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,600,663 - 63,639,654 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0863,367,893 - 63,405,313 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,629,828 - 62,667,248 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1862,648,881 - 62,686,299 (+)NCBI
Celera858,680,131 - 58,717,545 (+)NCBICelera
Cytogenetic Map8q24NCBI
Hcn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,139,852 - 4,181,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,139,852 - 4,181,377 (+)NCBIChiLan1.0ChiLan1.0
HCN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11570,994,405 - 71,043,256 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1570,997,020 - 71,042,285 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01552,231,906 - 52,285,220 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Hcn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640114,675,949 - 114,722,220 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647132,529,847 - 32,570,284 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647132,527,551 - 32,570,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HCN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,010,283 - 60,050,689 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,010,396 - 60,052,258 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,633,705 - 64,677,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HCN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12610,107,342 - 10,158,885 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2610,110,579 - 10,156,292 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048131,447,372 - 131,496,994 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hcn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781968,748 - 1,008,200 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624781968,608 - 1,007,969 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HCN4
386 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 1
Low 5 2 14 4 6 12 9 6
Below cutoff 3 7 6 2 6 6 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000047649   ⟹   ENSCAFP00000042974
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3036,639,908 - 36,656,406 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048090   ⟹   ENSCAFP00845037733
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3036,844,723 - 36,889,181 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048158   ⟹   ENSCAFP00845037774
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3036,844,723 - 36,889,009 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048216   ⟹   ENSCAFP00845037819
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3036,844,723 - 36,888,776 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845048265   ⟹   ENSCAFP00845037858
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3036,844,723 - 36,888,328 (-)Ensembl
RefSeq Acc Id: XM_038441755   ⟹   XP_038297683
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03036,844,740 - 36,888,776 (-)NCBI
RefSeq Acc Id: XM_038461068   ⟹   XP_038316996
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3036,573,522 - 36,617,524 (-)NCBI
RefSeq Acc Id: XM_038517529   ⟹   XP_038373457
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13036,796,738 - 36,840,679 (-)NCBI
RefSeq Acc Id: XM_038579892   ⟹   XP_038435820
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03037,078,286 - 37,122,259 (-)NCBI
RefSeq Acc Id: XM_038644105   ⟹   XP_038500033
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03036,822,594 - 36,866,568 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000042974   ⟸   ENSCAFT00000047649
RefSeq Acc Id: XP_038373457   ⟸   XM_038517529
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500033   ⟸   XM_038644105
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038297683   ⟸   XM_038441755
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038316996   ⟸   XM_038461068
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038435820   ⟸   XM_038579892
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCAFP00845037774   ⟸   ENSCAFT00845048158
RefSeq Acc Id: ENSCAFP00845037819   ⟸   ENSCAFT00845048216
RefSeq Acc Id: ENSCAFP00845037858   ⟸   ENSCAFT00845048265
RefSeq Acc Id: ENSCAFP00845037733   ⟸   ENSCAFT00845048090
Protein Domains
Cyclic nucleotide-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031809 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845027098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000042974.3 UniProtKB/TrEMBL
  ENSCAFP00000067578.1 UniProtKB/TrEMBL
  ENSCAFP00000071457.1 UniProtKB/TrEMBL
  ENSCAFP00000072357.1 UniProtKB/TrEMBL
  ENSCAFP00000072441.1 UniProtKB/TrEMBL
  ENSCAFP00000072577.1 UniProtKB/TrEMBL
  ENSCAFP00000074010.1 UniProtKB/TrEMBL
  ENSCAFP00000075105.1 UniProtKB/TrEMBL
  ENSCAFP00845037733.1 UniProtKB/TrEMBL
  ENSCAFP00845037774.1 UniProtKB/TrEMBL
  ENSCAFP00845037819 ENTREZGENE
  ENSCAFP00845037819.1 UniProtKB/TrEMBL
  ENSCAFP00845037858.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000047649.3 UniProtKB/TrEMBL
  ENSCAFT00000095027.1 UniProtKB/TrEMBL
  ENSCAFT00000101658.1 UniProtKB/TrEMBL
  ENSCAFT00000103937.1 UniProtKB/TrEMBL
  ENSCAFT00000104120.1 UniProtKB/TrEMBL
  ENSCAFT00000105800.1 UniProtKB/TrEMBL
  ENSCAFT00000108772.1 UniProtKB/TrEMBL
  ENSCAFT00000109811.1 UniProtKB/TrEMBL
  ENSCAFT00845048090.1 UniProtKB/TrEMBL
  ENSCAFT00845048158.1 UniProtKB/TrEMBL
  ENSCAFT00845048216 ENTREZGENE
  ENSCAFT00845048216.1 UniProtKB/TrEMBL
  ENSCAFT00845048265.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_CS UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  Ion_trans_N UniProtKB/TrEMBL
  K_chnl_volt-dep_EAG/ELK/ERG UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
NCBI Gene HCN4 ENTREZGENE
PANTHER I[[H]] CHANNEL, ISOFORM E UniProtKB/TrEMBL
  POTASSIUM/SODIUM HYPERPOLARIZATION-ACTIVATED CYCLIC NUCLEOTIDE-GATED CHANNEL 4 UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  Ion_trans_N UniProtKB/TrEMBL
PRINTS EAGCHANLFMLY UniProtKB/TrEMBL
  PRICHEXTENSN UniProtKB/TrEMBL
PROSITE CNMP_BINDING_1 UniProtKB/TrEMBL
  CNMP_BINDING_3 UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8I3PSU5_CANLF UniProtKB/TrEMBL
  A0A8I3PXZ5_CANLF UniProtKB/TrEMBL
  A0A8I3QDK2_CANLF UniProtKB/TrEMBL
  A0A8I3S694_CANLF UniProtKB/TrEMBL
  A0A8P0NTF9_CANLF UniProtKB/TrEMBL
  A0A8P0PM77_CANLF UniProtKB/TrEMBL
  A0A8P0PNQ6_CANLF UniProtKB/TrEMBL
  A0A8P0PQW5_CANLF UniProtKB/TrEMBL
  A0A8P0TJG9_CANLF UniProtKB/TrEMBL
  A0A8P0TQR1_CANLF UniProtKB/TrEMBL
  A0A8P0TR15_CANLF UniProtKB/TrEMBL
  A0A8P0TUV6_CANLF UniProtKB/TrEMBL
  Q68J49_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:58306 ENTREZGENE