AVPR1B (arginine vasopressin receptor 1B) - Rat Genome Database

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Gene: AVPR1B (arginine vasopressin receptor 1B) Canis lupus familiaris
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Symbol: AVPR1B
Name: arginine vasopressin receptor 1B
RGD ID: 12372785
Description: ENCODES a protein that exhibits identical protein binding (ortholog); peptide hormone binding (ortholog); vasopressin receptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); positive regulation of cellular pH reduction (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; G protein mediated signaling pathway via Galphas family; vasopressin signaling pathway; ASSOCIATED WITH ACTH-secreting pituitary adenoma (ortholog); alcohol dependence (ortholog); anxiety disorder (ortholog); FOUND IN dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vasopressin V1b receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,440,574 - 2,446,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,440,615 - 2,446,037 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,527,072 - 2,539,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,432,354 - 2,444,078 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,438,108 - 2,443,530 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,426,053 - 2,437,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,818,206 - 2,830,306 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0383,018,527 - 3,030,626 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AVPR1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,440,574 - 2,446,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,440,615 - 2,446,037 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,527,072 - 2,539,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,432,354 - 2,444,078 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,438,108 - 2,443,530 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,426,053 - 2,437,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,818,206 - 2,830,306 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0383,018,527 - 3,030,626 (-)NCBIUU_Cfam_GSD_1.0
AVPR1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,106,936 - 206,117,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,106,936 - 206,117,699 (-)EnsemblGRCh38hg38GRCh38
GRCh371206,223,943 - 206,234,395 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,390,567 - 204,398,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 341202,767,010 - 202,774,698NCBI
Celera1179,215,868 - 179,223,067 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,157,341 - 177,164,470 (+)NCBIHuRef
CHM1_11207,555,388 - 207,562,587 (-)NCBICHM1_1
T2T-CHM13v2.01205,370,978 - 205,381,434 (-)NCBIT2T-CHM13v2.0
Avpr1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,526,908 - 131,539,740 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,526,977 - 131,539,738 (+)EnsemblGRCm39 Ensembl
GRCm381131,599,114 - 131,612,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,599,239 - 131,612,000 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,495,691 - 133,508,577 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,426,660 - 133,439,546 (+)NCBIMGSCv36mm8
Celera1134,211,156 - 134,224,033 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.09NCBI
Avpr1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,598,116 - 45,611,680 (+)NCBIGRCr8
mRatBN7.21343,046,531 - 43,059,046 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,046,267 - 43,057,792 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01348,390,434 - 48,400,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,390,417 - 48,400,632 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,367,307 - 48,378,831 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,465,718 - 53,475,867 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map13q13NCBI
Avpr1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,705,305 - 41,716,173 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,706,088 - 41,716,173 (-)NCBIChiLan1.0ChiLan1.0
AVPR1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,254,921 - 43,264,892 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,220,427 - 43,230,407 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,713,548 - 181,723,645 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,996,869 - 186,007,043 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,999,627 - 186,007,043 (-)Ensemblpanpan1.1panPan2
Avpr1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,175,333 - 69,183,581 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,415,547 - 6,424,711 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,415,544 - 6,423,863 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AVPR1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,772,591 - 66,776,931 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,769,472 - 66,776,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,019,057 - 73,024,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AVPR1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,234,651 - 23,244,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,234,823 - 23,241,159 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,931,432 - 23,942,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Avpr1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,237,036 - 5,241,845 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,237,036 - 5,247,383 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AVPR1B
103 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
nervous system
reproductive system
respiratory system
5 6 14 11 3 3 8 6 7 8

Sequence


Ensembl Acc Id: ENSCAFT00000016207   ⟹   ENSCAFP00000014991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl382,440,615 - 2,446,037 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845049528   ⟹   ENSCAFP00845038857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl382,438,108 - 2,443,530 (-)Ensembl
RefSeq Acc Id: XM_038448342   ⟹   XP_038304270
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0382,432,354 - 2,444,078 (-)NCBI
RefSeq Acc Id: XM_038522259   ⟹   XP_038378187
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1382,426,053 - 2,437,770 (-)NCBI
RefSeq Acc Id: XM_038586063   ⟹   XP_038441991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0383,018,527 - 3,030,626 (-)NCBI
RefSeq Acc Id: XM_038650467   ⟹   XP_038506395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0382,818,206 - 2,830,306 (-)NCBI
RefSeq Acc Id: XM_545695   ⟹   XP_545695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1382,440,574 - 2,446,037 (-)NCBI
Dog10K_Boxer_Tasha382,527,072 - 2,539,143 (-)NCBI
Sequence:
RefSeq Acc Id: XP_545695   ⟸   XM_545695
- UniProtKB: A0A8P0NC80 (UniProtKB/TrEMBL),   A0A8C0MP84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000014991   ⟸   ENSCAFT00000016207
RefSeq Acc Id: XP_038378187   ⟸   XM_038522259
RefSeq Acc Id: XP_038506395   ⟸   XM_038650467
RefSeq Acc Id: XP_038304270   ⟸   XM_038448342
- UniProtKB: A0A8I3Q3G9 (UniProtKB/TrEMBL),   A0A8C0MP84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441991   ⟸   XM_038586063
- UniProtKB: A0A8C0MP84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845038857   ⟸   ENSCAFT00845049528

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010214 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007732 UniProtKB/TrEMBL
  ENSCAFG00040019090 UniProtKB/TrEMBL
  ENSCAFG00845028059 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016207.5 UniProtKB/TrEMBL
  ENSCAFT00030014170.1 UniProtKB/TrEMBL
  ENSCAFT00040035288.1 UniProtKB/TrEMBL
  ENSCAFT00845049528 ENTREZGENE
  ENSCAFT00845049528.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro DUF1856 UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vasoprsn_rcpt UniProtKB/TrEMBL
  Vprs_rcpt_V1B UniProtKB/TrEMBL
KEGG Report cfa:488578 UniProtKB/TrEMBL
NCBI Gene AVPR1B ENTREZGENE
PANTHER NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  VASOPRESSIN V1B RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  VASOPRESSINR UniProtKB/TrEMBL
  VASOPRSNV1BR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART DUF1856 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0MP84 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q3G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NC80 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38319 ENTREZGENE