LOC100686441 (keratin-associated protein 13-1-like) - Rat Genome Database

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Gene: LOC100686441 (keratin-associated protein 13-1-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC100686441
Name: keratin-associated protein 13-1-like
RGD ID: 12370475
Description: FOUND IN cytosol (inferred); intermediate filament (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13125,303,621 - 25,304,440 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3125,294,636 - 25,295,178 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03125,418,467 - 25,419,009 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13125,366,312 - 25,366,854 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03125,377,819 - 25,378,361 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03125,846,218 - 25,846,766 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC100686441
17 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003433958   ⟹   XP_003434006
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13125,303,621 - 25,304,440 (+)NCBI
Dog10K_Boxer_Tasha3125,294,636 - 25,295,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038443767   ⟹   XP_038299695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03125,418,467 - 25,419,009 (+)NCBI
RefSeq Acc Id: XM_038518231   ⟹   XP_038374159
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13125,366,312 - 25,366,854 (+)NCBI
RefSeq Acc Id: XM_038581729   ⟹   XP_038437657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03125,846,218 - 25,846,766 (+)NCBI
RefSeq Acc Id: XM_038646133   ⟹   XP_038502061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03125,377,819 - 25,378,361 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003434006 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299695 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374159 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437657 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000070309.1
Reference Protein Sequences
RefSeq Acc Id: XP_003434006   ⟸   XM_003433958
- UniProtKB: A0A8P0TMX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038374159   ⟸   XM_038518231
RefSeq Acc Id: XP_038502061   ⟸   XM_038646133
RefSeq Acc Id: XP_038299695   ⟸   XM_038443767
- UniProtKB: A0A8P0TMX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437657   ⟸   XM_038581729
- UniProtKB: A0A8P0TMX6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000055584 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000103679.1 UniProtKB/TrEMBL
InterPro KRTAP_PMG UniProtKB/TrEMBL
KEGG Report cfa:100686441 UniProtKB/TrEMBL
NCBI Gene LOC100686441 ENTREZGENE
Pfam PMG UniProtKB/TrEMBL
UniProt A0A8P0TMX6 ENTREZGENE, UniProtKB/TrEMBL