RSBN1L (round spermatid basic protein 1 like) - Rat Genome Database

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Gene: RSBN1L (round spermatid basic protein 1 like) Canis lupus familiaris
Analyze
Symbol: RSBN1L
Name: round spermatid basic protein 1 like
RGD ID: 12370120
Description: ENCODES a protein that exhibits dioxygenase activity (inferred); metal ion binding (inferred); oxidoreductase activity (inferred); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysine-specific demethylase RSBN1L; round spermatid basic protein 1-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,756,082 - 17,798,398 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,768,269 - 17,795,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1817,330,969 - 17,391,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01818,057,222 - 18,117,763 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,057,222 - 18,117,754 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,807,484 - 17,872,393 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,747,312 - 17,807,574 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,016,773 - 18,081,582 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RSBN1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,756,082 - 17,798,398 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,768,269 - 17,795,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1817,330,969 - 17,391,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01818,057,222 - 18,117,763 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,057,222 - 18,117,754 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,807,484 - 17,872,393 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,747,312 - 17,807,574 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,016,773 - 18,081,582 (+)NCBIUU_Cfam_GSD_1.0
RSBN1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38777,696,459 - 77,783,022 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl777,696,459 - 77,783,022 (+)EnsemblGRCh38hg38GRCh38
GRCh37777,325,776 - 77,412,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36777,163,696 - 77,246,944 (+)NCBINCBI36Build 36hg18NCBI36
Build 34776,970,410 - 77,053,656NCBI
Celera772,026,342 - 72,109,715 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef771,928,217 - 72,012,210 (+)NCBIHuRef
CHM1_1777,256,099 - 77,339,362 (+)NCBICHM1_1
T2T-CHM13v2.0778,948,368 - 79,034,967 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,658,806 - 76,742,183 (+)NCBI
Rsbn1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39521,097,284 - 21,163,019 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl521,098,026 - 21,161,396 (-)EnsemblGRCm39 Ensembl
GRCm38520,892,290 - 20,957,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl520,893,028 - 20,956,398 (-)EnsemblGRCm38mm10GRCm38
MGSCv37520,398,842 - 20,457,640 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36520,398,842 - 20,457,640 (-)NCBIMGSCv36mm8
Celera517,850,675 - 17,909,612 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.83NCBI
Rsbn1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8415,014,405 - 15,093,287 (+)NCBIGRCr8
mRatBN7.2414,138,076 - 14,203,972 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,139,031 - 14,201,147 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx419,276,241 - 19,337,938 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0415,078,273 - 15,139,969 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0413,461,886 - 13,523,575 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,748,745 - 10,809,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,748,745 - 10,809,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,741,003 - 10,801,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,658,421 - 9,721,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.149,658,845 - 9,721,749 (+)NCBI
Celera49,701,222 - 9,762,558 (+)NCBICelera
Cytogenetic Map4q11NCBI
Rsbn1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,457,305 - 7,528,472 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,453,868 - 7,528,509 (-)NCBIChiLan1.0ChiLan1.0
RSBN1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2695,546,299 - 95,643,285 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17143,810,934 - 143,907,922 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0769,611,208 - 69,708,170 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1783,426,713 - 83,519,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl783,426,713 - 83,519,420 (+)Ensemblpanpan1.1panPan2
Rsbn1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511859,948,515 - 60,026,864 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647921,072,338 - 21,142,393 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647921,071,125 - 21,144,078 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSBN1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9102,363,944 - 102,435,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19102,366,605 - 102,435,215 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RSBN1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12171,154,647 - 71,232,304 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2171,151,157 - 71,231,601 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604232,692,288 - 32,772,848 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rsbn1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,873,588 - 26,950,361 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473926,873,245 - 26,954,038 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RSBN1L
473 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 11 1 6 10
Low 4 5 11 6 5 6 6 6 6 8 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000006930   ⟹   ENSCAFP00000006414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1817,768,269 - 17,795,197 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845040182   ⟹   ENSCAFP00845031473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1818,057,222 - 18,117,754 (+)Ensembl
RefSeq Acc Id: XM_038423580   ⟹   XP_038279508
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01818,057,222 - 18,117,763 (+)NCBI
RefSeq Acc Id: XM_038454302   ⟹   XP_038310230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1817,330,969 - 17,391,231 (+)NCBI
RefSeq Acc Id: XM_038500263   ⟹   XP_038356191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11817,807,484 - 17,872,393 (+)NCBI
RefSeq Acc Id: XM_038562814   ⟹   XP_038418742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01818,016,773 - 18,081,582 (+)NCBI
RefSeq Acc Id: XM_038626938   ⟹   XP_038482866
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01817,747,312 - 17,807,574 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000006414   ⟸   ENSCAFT00000006930
RefSeq Acc Id: XP_038356191   ⟸   XM_038500263
RefSeq Acc Id: XP_038482866   ⟸   XM_038626938
RefSeq Acc Id: XP_038279508   ⟸   XM_038423580
- UniProtKB: A0A8C0SZ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310230   ⟸   XM_038454302
- UniProtKB: A0A8C0N2P3 (UniProtKB/TrEMBL),   A0A8P0N731 (UniProtKB/TrEMBL),   A0A8C0SZ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418742   ⟸   XM_038562814
- UniProtKB: A0A8C0SZ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845031473   ⟸   ENSCAFT00845040182


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004323 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030012651 UniProtKB/TrEMBL
  ENSCAFG00040018198 UniProtKB/TrEMBL
  ENSCAFG00845022734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006930.5 UniProtKB/TrEMBL
  ENSCAFT00030023541.1 UniProtKB/TrEMBL
  ENSCAFT00040033589.1 UniProtKB/TrEMBL
  ENSCAFT00845040182 ENTREZGENE
  ENSCAFT00845040182.1 UniProtKB/TrEMBL
InterPro RSBN1/Dpy-21 UniProtKB/TrEMBL
NCBI Gene RSBN1L ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE RSBN1L UniProtKB/TrEMBL
  PTHR13354 UniProtKB/TrEMBL
UniProt A0A8C0N2P3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SZ64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PC44_CANLF UniProtKB/TrEMBL
  A0A8P0N731 ENTREZGENE
UniProt Secondary A0A8P0N731 UniProtKB/TrEMBL
VGNC ID VGNC:45772 ENTREZGENE