TNFRSF4 (TNF receptor superfamily member 4) - Rat Genome Database

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Gene: TNFRSF4 (TNF receptor superfamily member 4) Canis lupus familiaris
Analyze
Symbol: TNFRSF4
Name: TNF receptor superfamily member 4
RGD ID: 12367355
Description: ENCODES a protein that exhibits tumor necrosis factor receptor activity (inferred); INVOLVED IN cellular defense response (ortholog); inflammatory response (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); cervical squamous cell carcinoma (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,401,410 - 56,404,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,401,384 - 56,404,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,478,386 - 56,481,328 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,604,302 - 56,607,244 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1556,595,039 - 56,597,980 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,487,321 - 56,490,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,877,316 - 56,880,258 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,401,410 - 56,404,410 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,401,384 - 56,404,761 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,478,386 - 56,481,328 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,604,302 - 56,607,244 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1556,595,039 - 56,597,980 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,487,321 - 56,490,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,877,316 - 56,880,258 (-)NCBIUU_Cfam_GSD_1.0
TNFRSF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,211,340 - 1,214,153 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,211,326 - 1,214,153 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,146,720 - 1,149,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,136,569 - 1,139,375 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,186,629 - 1,189,435NCBI
Celera11,434,142 - 1,436,950 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1418,421 - 421,246 (-)NCBIHuRef
CHM1_111,133,180 - 1,136,022 (-)NCBICHM1_1
T2T-CHM13v2.01639,783 - 642,610 (-)NCBIT2T-CHM13v2.0
Tnfrsf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,098,049 - 156,101,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,098,300 - 156,101,069 (+)EnsemblGRCm39 Ensembl
GRCm384156,013,595 - 156,016,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,013,843 - 156,016,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,387,804 - 155,390,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,857,495 - 154,860,389 (+)NCBIMGSCv36mm8
Celera4158,276,449 - 158,279,355 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.68NCBI
Tnfrsf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,889,134 - 171,891,824 (+)NCBIGRCr8
mRatBN7.25166,606,909 - 166,609,599 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,606,909 - 166,609,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,310,441 - 169,313,132 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,131,863 - 171,134,554 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,094,395 - 171,097,086 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,447,784 - 173,450,474 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,447,784 - 173,450,474 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,921,804 - 176,924,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,856,351 - 172,859,041 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,866,845 - 172,869,536 (+)NCBI
Celera5164,807,766 - 164,810,456 (+)NCBICelera
Cytogenetic Map5q36NCBI
Tnfrsf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,567,220 - 9,569,676 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,565,424 - 9,569,836 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,011,897 - 227,014,893 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,707,527 - 225,711,573 (+)NCBINHGRI_mPanPan1
PanPan1.111,168,706 - 1,171,341 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,168,935 - 1,171,337 (-)Ensemblpanpan1.1panPan2
Tnfrsf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,561,562 - 27,567,137 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,901,749 - 1,904,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,523,804 - 63,526,666 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,523,850 - 63,526,672 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,011,607 - 58,014,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,231,064 - 130,234,525 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,231,584 - 130,234,313 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,799,764 - 34,803,311 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,373,810 - 8,376,204 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,372,092 - 8,376,108 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TNFRSF4
24 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 2 4 5 1 2
Below cutoff 3 4 19 3 2 3 1 3 10 8 8 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038477660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_546720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000030700   ⟹   ENSCAFP00000028534
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl556,401,384 - 56,404,761 (-)Ensembl
RefSeq Acc Id: XM_038477660   ⟹   XP_038333588
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1556,595,039 - 56,597,980 (-)NCBI
RefSeq Acc Id: XM_038477661   ⟹   XP_038333589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1556,595,039 - 56,597,980 (-)NCBI
RefSeq Acc Id: XM_038477663   ⟹   XP_038333591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1556,595,039 - 56,597,980 (-)NCBI
RefSeq Acc Id: XM_038505061   ⟹   XP_038360989
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha556,478,386 - 56,481,328 (-)NCBI
RefSeq Acc Id: XM_038505068   ⟹   XP_038360996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha556,478,386 - 56,481,328 (-)NCBI
RefSeq Acc Id: XM_038505072   ⟹   XP_038361000
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha556,478,386 - 56,481,328 (-)NCBI
RefSeq Acc Id: XM_038535544   ⟹   XP_038391472
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0556,877,316 - 56,880,258 (-)NCBI
RefSeq Acc Id: XM_038535545   ⟹   XP_038391473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0556,877,316 - 56,880,258 (-)NCBI
RefSeq Acc Id: XM_038535546   ⟹   XP_038391474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0556,877,316 - 56,880,258 (-)NCBI
RefSeq Acc Id: XM_038599761   ⟹   XP_038455689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0556,487,321 - 56,490,255 (-)NCBI
RefSeq Acc Id: XM_038599762   ⟹   XP_038455690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0556,487,321 - 56,490,255 (-)NCBI
RefSeq Acc Id: XM_038599763   ⟹   XP_038455691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0556,487,321 - 56,490,255 (-)NCBI
RefSeq Acc Id: XM_038664291   ⟹   XP_038520219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0556,604,302 - 56,607,244 (-)NCBI
RefSeq Acc Id: XM_038664292   ⟹   XP_038520220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0556,604,302 - 56,607,244 (-)NCBI
RefSeq Acc Id: XM_038664293   ⟹   XP_038520221
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0556,604,302 - 56,607,244 (-)NCBI
RefSeq Acc Id: ENSCAFP00000028534   ⟸   ENSCAFT00000030700
RefSeq Acc Id: XP_038333589   ⟸   XM_038477661
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038333591   ⟸   XM_038477663
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038333588   ⟸   XM_038477660
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455690   ⟸   XM_038599762
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038455691   ⟸   XM_038599763
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038455689   ⟸   XM_038599761
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038520220   ⟸   XM_038664292
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KEZ3 (UniProtKB/TrEMBL),   A0A8C0PXQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520221   ⟸   XM_038664293
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038520219   ⟸   XM_038664291
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PXQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038360996   ⟸   XM_038505068
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KEZ3 (UniProtKB/TrEMBL),   A0A8C0PXQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038361000   ⟸   XM_038505072
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038360989   ⟸   XM_038505061
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PXQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391473   ⟸   XM_038535545
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KEZ3 (UniProtKB/TrEMBL),   A0A8C0PXQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391474   ⟸   XM_038535546
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038391472   ⟸   XM_038535544
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PXQ5 (UniProtKB/TrEMBL)
Protein Domains
TNFR-Cys


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019328 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000091 UniProtKB/TrEMBL
  ENSCAFG00040003243 UniProtKB/TrEMBL
  ENSCAFG00845022948 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030700.5 UniProtKB/TrEMBL
  ENSCAFT00030000123.1 UniProtKB/TrEMBL
  ENSCAFT00040006143.1 UniProtKB/TrEMBL
  ENSCAFT00845040491.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_4 UniProtKB/TrEMBL
  TNFRSF4_N UniProtKB/TrEMBL
NCBI Gene TNFRSF4 ENTREZGENE
PANTHER PTHR47881 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 4 UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/TrEMBL
PRINTS TNFACTORR4 UniProtKB/TrEMBL
PROSITE TNFR_NGFR_1 UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
SMART TNFR UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A8C0KEZ3 ENTREZGENE
  A0A8C0PXQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PKB9_CANLF UniProtKB/TrEMBL
  A0A8P0NKI3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47665 ENTREZGENE