UBA52 (ubiquitin A-52 residue ribosomal protein fusion product 1) - Rat Genome Database

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Gene: UBA52 (ubiquitin A-52 residue ribosomal protein fusion product 1) Canis lupus familiaris
Analyze
Symbol: UBA52
Name: ubiquitin A-52 residue ribosomal protein fusion product 1
RGD ID: 12363688
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN response to insecticide (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Brain Injuries (ortholog); colon carcinoma (ortholog); Diabetic Nephropathies (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: UB-RPL40; UBCEP2; ubiquitin-60S ribosomal protein L40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC612529  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,477,128 - 44,480,023 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,477,130 - 44,479,948 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,391,819 - 44,394,638 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,963,325 - 44,966,217 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,963,327 - 44,966,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,200,687 - 44,203,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,610,646 - 44,613,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,886,089 - 44,888,908 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10964405   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UBA52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,477,128 - 44,480,023 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,477,130 - 44,479,948 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,391,819 - 44,394,638 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,963,325 - 44,966,217 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,963,327 - 44,966,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,200,687 - 44,203,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,610,646 - 44,613,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,886,089 - 44,888,908 (-)NCBIUU_Cfam_GSD_1.0
UBA52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,563,766 - 18,577,550 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,571,730 - 18,577,550 (+)EnsemblGRCh38hg38GRCh38
GRCh371918,682,534 - 18,688,360 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,543,614 - 18,549,270 (+)NCBINCBI36Build 36hg18NCBI36
Build 341918,543,667 - 18,547,050NCBI
Celera1918,584,823 - 18,590,479 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,245,210 - 18,250,866 (+)NCBIHuRef
CHM1_11918,682,813 - 18,688,469 (+)NCBICHM1_1
T2T-CHM13v2.01918,698,806 - 18,712,614 (+)NCBIT2T-CHM13v2.0
Uba52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,960,913 - 70,963,067 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,960,913 - 70,963,451 (-)EnsemblGRCm39 Ensembl
GRCm38870,508,263 - 70,510,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,973,092 - 3,973,595 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl870,508,263 - 70,510,801 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,032,165 - 73,034,266 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,437,255 - 73,439,356 (-)NCBIMGSCv36mm8
Celera873,064,684 - 73,066,785 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Uba52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,952,583 - 18,954,780 (+)NCBIGRCr8
mRatBN7.21618,918,614 - 18,920,807 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,900,616 - 18,920,807 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,960,438 - 18,962,595 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,093,260 - 20,095,416 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,013,400 - 19,015,557 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,668,925 - 20,671,127 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,668,971 - 20,671,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,524,450 - 20,526,606 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,425,401 - 19,427,557 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,425,406 - 19,427,555 (+)NCBI
Celera1619,110,027 - 19,112,183 (+)NCBICelera
Cytogenetic Map16p14NCBI
Uba52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,006,147 - 3,018,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,007,074 - 3,009,886 (-)NCBIChiLan1.0ChiLan1.0
UBA52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,430,681 - 23,434,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,439,183 - 22,442,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,040,946 - 18,052,445 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,018,821 - 19,022,263 (+)NCBIpanpan1.1PanPan1.1panPan2
Uba52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,157,851 - 203,160,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,706,994 - 2,719,846 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,706,990 - 2,709,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBA52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,238,906 - 59,240,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,238,802 - 59,241,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,061,299 - 59,064,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBA52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,040,127 - 17,043,569 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,040,064 - 17,045,737 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660742,294,542 - 2,298,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uba52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,736,899 - 1,750,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,745,903 - 1,748,750 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBA52
31 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 5 14 6 6 6 6 8 10 6
Medium 5 8 6 6 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000023383   ⟹   ENSCAFP00000021714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2044,477,130 - 44,479,948 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845036939   ⟹   ENSCAFP00845028922
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2044,963,327 - 44,966,145 (-)Ensembl
RefSeq Acc Id: NM_001128095   ⟹   NP_001121567
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12044,477,128 - 44,479,948 (-)NCBI
Dog10K_Boxer_Tasha2044,391,819 - 44,394,638 (-)NCBI
ROS_Cfam_1.02044,963,325 - 44,966,145 (-)NCBI
UMICH_Zoey_3.12044,200,687 - 44,203,507 (-)NCBI
UNSW_CanFamBas_1.02044,610,646 - 44,613,463 (-)NCBI
UU_Cfam_GSD_1.02044,886,089 - 44,888,908 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038426361   ⟹   XP_038282289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02044,963,325 - 44,966,217 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001121567   ⟸   NM_001128095
- UniProtKB: Q7JK34 (UniProtKB/Swiss-Prot),   P63049 (UniProtKB/Swiss-Prot),   Q9XSV1 (UniProtKB/Swiss-Prot),   P63050 (UniProtKB/Swiss-Prot),   A0A8C0KHI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000021714   ⟸   ENSCAFT00000023383
RefSeq Acc Id: XP_038282289   ⟸   XM_038426361
- Peptide Label: isoform X1
- UniProtKB: Q7JK34 (UniProtKB/Swiss-Prot),   P63050 (UniProtKB/Swiss-Prot),   P63049 (UniProtKB/Swiss-Prot),   Q9XSV1 (UniProtKB/Swiss-Prot),   A0A8C0KHI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845028922   ⟸   ENSCAFT00845036939
Protein Domains
Ubiquitin-like

Promoters
RGD ID:13686936
Promoter ID:EPDNEW_C5006
Type:initiation region
Name:UBA52_1
Description:Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal proteinL40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12044,479,940 - 44,480,000EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014723 Ensembl, UniProtKB/Swiss-Prot
  ENSCAFG00030016247 UniProtKB/Swiss-Prot
  ENSCAFG00040016838 UniProtKB/Swiss-Prot
  ENSCAFG00040023038 UniProtKB/Swiss-Prot
  ENSCAFG00805020732 UniProtKB/Swiss-Prot
  ENSCAFG00845020932 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSCAFT00000023383.5 UniProtKB/Swiss-Prot
  ENSCAFT00030029916.1 UniProtKB/Swiss-Prot
  ENSCAFT00040031071.1 UniProtKB/Swiss-Prot
  ENSCAFT00040042825.1 UniProtKB/Swiss-Prot
  ENSCAFT00805037436 UniProtKB/Swiss-Prot
  ENSCAFT00845036939 ENTREZGENE
  ENSCAFT00845036939.1 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.1060.50 UniProtKB/Swiss-Prot
InterPro L40e_sf UniProtKB/Swiss-Prot
  Ribosomal_L40e UniProtKB/Swiss-Prot
  Ubiquitin-like_dom UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_CS UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report cfa:403722 UniProtKB/Swiss-Prot
NCBI Gene UBA52 ENTREZGENE
PANTHER UBIQUITIN UniProtKB/Swiss-Prot
  UBIQUITIN-60S RIBOSOMAL PROTEIN L40 UniProtKB/Swiss-Prot
Pfam Ribosomal_L40e UniProtKB/Swiss-Prot
  ubiquitin UniProtKB/Swiss-Prot
PRINTS UBIQUITIN UniProtKB/Swiss-Prot
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot
  UBIQUITIN_2 UniProtKB/Swiss-Prot
SMART Ribosomal_L40e UniProtKB/Swiss-Prot
  UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
UniProt A0A8C0KHI3 ENTREZGENE
  P63049 ENTREZGENE
  P63050 ENTREZGENE
  Q7JK34 ENTREZGENE
  Q9XSV1 ENTREZGENE
  RL40_CANLF UniProtKB/Swiss-Prot
UniProt Secondary P63049 UniProtKB/Swiss-Prot
  Q7JK34 UniProtKB/Swiss-Prot
  Q9XSV1 UniProtKB/Swiss-Prot
VGNC ID VGNC:59398 ENTREZGENE