GTF2A1L (general transcription factor IIA subunit 1 like) - Rat Genome Database

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Gene: GTF2A1L (general transcription factor IIA subunit 1 like) Canis lupus familiaris
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Symbol: GTF2A1L
Name: general transcription factor IIA subunit 1 like (Ensembl:ral transcription factor IIA subunit 1 like)
RGD ID: 12361552
Description: INVOLVED IN regulation of endocytosis (ortholog); ASSOCIATED WITH Anorchia (ortholog); familial male-limited precocious puberty (ortholog); hypogonadism (ortholog); FOUND IN cytoplasm (inferred); male germ cell nucleus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: general transcription factor IIA, 1-like; TFIIA-alpha and beta-like factor
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11050,488,530 - 50,533,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1050,488,530 - 50,533,516 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1050,342,097 - 50,387,075 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01051,367,683 - 51,409,702 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1051,367,683 - 51,409,702 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11051,067,592 - 51,112,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01051,354,835 - 51,396,815 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01051,542,817 - 51,587,936 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
GTF2A1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11050,488,530 - 50,533,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1050,488,530 - 50,533,516 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1050,342,097 - 50,387,075 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01051,367,683 - 51,409,702 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1051,367,683 - 51,409,702 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11051,067,592 - 51,112,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01051,354,835 - 51,396,815 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01051,542,817 - 51,587,936 (+)NCBIUU_Cfam_GSD_1.0
STON1-GTF2A1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38248,529,925 - 48,776,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl248,529,925 - 48,776,517 (+)EnsemblGRCh38hg38GRCh38
GRCh37248,757,064 - 49,003,658 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36248,649,663 - 48,760,246 (+)NCBINCBI36Build 36hg18NCBI36
Celera248,636,050 - 48,747,046 (+)NCBICelera
Cytogenetic Map2p16.3NCBI
HuRef248,493,480 - 48,737,197 (+)NCBIHuRef
CHM1_1248,687,156 - 48,933,756 (+)NCBICHM1_1
T2T-CHM13v2.0248,535,810 - 48,772,541 (+)NCBIT2T-CHM13v2.0

Variants

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Variants in GTF2A1L
432 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000004251   ⟹   ENSCAFP00000003935
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1050,488,530 - 50,533,516 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000049114   ⟹   ENSCAFP00000039538
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1050,488,545 - 50,533,516 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010680   ⟹   ENSCAFP00845008325
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1051,367,683 - 51,409,702 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010698   ⟹   ENSCAFP00845008338
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1051,367,698 - 51,409,702 (+)Ensembl
RefSeq Acc Id: NM_001204843   ⟹   NP_001191772
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11050,488,530 - 50,533,516 (+)NCBI
Dog10K_Boxer_Tasha1050,342,097 - 50,387,075 (+)NCBI
ROS_Cfam_1.01051,367,683 - 51,409,702 (+)NCBI
UMICH_Zoey_3.11051,067,592 - 51,112,612 (+)NCBI
UNSW_CanFamBas_1.01051,354,835 - 51,396,815 (+)NCBI
UU_Cfam_GSD_1.01051,542,817 - 51,587,936 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001191772 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001191772   ⟸   NM_001204843
- UniProtKB: F1PKI8 (UniProtKB/TrEMBL),   A0A8C0MPA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000039538   ⟸   ENSCAFT00000049114
RefSeq Acc Id: ENSCAFP00000003935   ⟸   ENSCAFT00000004251
RefSeq Acc Id: ENSCAFP00845008338   ⟸   ENSCAFT00845010698
RefSeq Acc Id: ENSCAFP00845008325   ⟸   ENSCAFT00845010680


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000042623 Ensembl
  ENSCAFG00030008262 UniProtKB/TrEMBL
  ENSCAFG00040013234 UniProtKB/TrEMBL
  ENSCAFG00845006018 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030013323.1 UniProtKB/TrEMBL
  ENSCAFP00030013358.1 UniProtKB/TrEMBL
  ENSCAFP00040021319 UniProtKB/TrEMBL
  ENSCAFP00040021359 UniProtKB/TrEMBL
  ENSCAFP00845008325 ENTREZGENE
  ENSCAFP00845008325.1 UniProtKB/TrEMBL
  ENSCAFP00845008338.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030015281.1 UniProtKB/TrEMBL
  ENSCAFT00030015316.1 UniProtKB/TrEMBL
  ENSCAFT00040024534 UniProtKB/TrEMBL
  ENSCAFT00040024579 UniProtKB/TrEMBL
  ENSCAFT00845010680 ENTREZGENE
  ENSCAFT00845010680.1 UniProtKB/TrEMBL
  ENSCAFT00845010698.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.18.10 UniProtKB/TrEMBL
InterPro TFIIA_asu/bsu UniProtKB/TrEMBL
  TFIIA_b-brl UniProtKB/TrEMBL
NCBI Gene GTF2A1L ENTREZGENE
PANTHER PTHR12694 UniProtKB/TrEMBL
Pfam TFIIA UniProtKB/TrEMBL
SMART TFIIA UniProtKB/TrEMBL
Superfamily-SCOP SSF50784 UniProtKB/TrEMBL
UniProt A0A8C0MKZ5_CANLF UniProtKB/TrEMBL
  A0A8C0MPA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N1G0_CANLF UniProtKB/TrEMBL
  A0A8I3RUH1_CANLF UniProtKB/TrEMBL
  F1PKI8 ENTREZGENE