KRT27 (keratin 27) - Rat Genome Database

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Gene: KRT27 (keratin 27) Canis lupus familiaris
Analyze
Symbol: KRT27
Name: keratin 27
RGD ID: 12361376
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN hair follicle morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); intermediate filament (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: keratin, type I cytoskeletal 27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,899,575 - 21,904,867 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl921,899,575 - 21,904,867 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,372,603 - 21,377,900 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,692,380 - 22,697,678 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl922,692,380 - 22,697,678 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,467,309 - 21,472,601 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,725,887 - 21,731,177 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,850,261 - 21,855,555 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KRT27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,899,575 - 21,904,867 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl921,899,575 - 21,904,867 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,372,603 - 21,377,900 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,692,380 - 22,697,678 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl922,692,380 - 22,697,678 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,467,309 - 21,472,601 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,725,887 - 21,731,177 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,850,261 - 21,855,555 (+)NCBIUU_Cfam_GSD_1.0
KRT27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,776,808 - 40,782,550 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,776,808 - 40,782,550 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,933,060 - 38,938,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,186,586 - 36,192,312 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,186,586 - 36,192,312NCBI
Celera1735,594,607 - 35,600,333 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,727,425 - 34,733,151 (-)NCBIHuRef
CHM1_11739,168,382 - 39,174,102 (-)NCBICHM1_1
T2T-CHM13v2.01741,641,116 - 41,646,852 (-)NCBIT2T-CHM13v2.0
Krt27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,236,391 - 99,241,944 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,236,391 - 99,241,930 (-)EnsemblGRCm39 Ensembl
GRCm381199,345,565 - 99,351,118 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,345,565 - 99,351,104 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,206,880 - 99,212,408 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,161,656 - 99,167,184 (-)NCBIMGSCv36mm8
MGSCv3611100,120,564 - 100,126,092 (-)NCBIMGSCv36mm8
Cytogenetic Map11DNCBI
cM Map1162.92NCBI
Krt27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,794,848 - 84,800,131 (-)NCBIGRCr8
mRatBN7.21084,298,684 - 84,303,967 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,298,508 - 84,303,967 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1089,242,350 - 89,247,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,740,468 - 88,745,758 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01084,132,452 - 84,137,742 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01087,256,434 - 87,261,717 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1087,256,434 - 87,261,717 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01087,051,955 - 87,057,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41088,248,561 - 88,253,844 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11088,262,930 - 88,268,214 (-)NCBI
Celera1083,037,621 - 83,042,904 (-)NCBICelera
Cytogenetic Map10q31NCBI
Krt27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,216,809 - 15,264,012 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,242,355 - 15,246,979 (-)NCBIChiLan1.0ChiLan1.0
KRT27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,168,606 - 24,175,788 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,059,046 - 26,066,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,500,555 - 16,507,412 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,726,753 - 16,732,468 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,726,753 - 16,732,468 (+)Ensemblpanpan1.1panPan2
KRT27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,677,106 - 21,682,464 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,677,109 - 21,682,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,806,542 - 21,811,897 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRT27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,401,533 - 65,409,006 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,402,703 - 65,407,847 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,284,378 - 36,289,830 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,623,714 - 2,628,223 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,623,714 - 2,628,383 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KRT27
60 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 2 1
Below cutoff 5 4 19 3 6 3 3 10 8 10 5

Sequence


RefSeq Acc Id: ENSCAFT00000025399   ⟹   ENSCAFP00000023584
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl921,899,575 - 21,904,867 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012801   ⟹   ENSCAFP00845009981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl922,692,380 - 22,697,678 (+)Ensembl
RefSeq Acc Id: NM_001346069   ⟹   NP_001332998
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1921,899,575 - 21,904,867 (+)NCBI
Dog10K_Boxer_Tasha921,372,603 - 21,377,900 (+)NCBI
ROS_Cfam_1.0922,692,380 - 22,697,678 (+)NCBI
UMICH_Zoey_3.1921,467,309 - 21,472,601 (+)NCBI
UNSW_CanFamBas_1.0921,725,887 - 21,731,177 (+)NCBI
UU_Cfam_GSD_1.0921,850,261 - 21,855,555 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001332998 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000023584.4
  ENSCAFP00030026808.1
  ENSCAFP00040021278.1
  ENSCAFP00845009981
  ENSCAFP00845009981.1
RefSeq Acc Id: NP_001332998   ⟸   NM_001346069
- UniProtKB: A0A8C0R3H6 (UniProtKB/TrEMBL),   A0A8C0RLT1 (UniProtKB/TrEMBL),   A0A8I3MUF8 (UniProtKB/TrEMBL),   A0A8C0SGR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000023584   ⟸   ENSCAFT00000025399
RefSeq Acc Id: ENSCAFP00845009981   ⟸   ENSCAFT00845012801
Protein Domains
IF rod


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016012 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016634 UniProtKB/TrEMBL
  ENSCAFG00040013252 UniProtKB/TrEMBL
  ENSCAFG00845007233 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025399.5 UniProtKB/TrEMBL
  ENSCAFT00030030729.1 UniProtKB/TrEMBL
  ENSCAFT00040024487.1 UniProtKB/TrEMBL
  ENSCAFT00845012801 ENTREZGENE
  ENSCAFT00845012801.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_rod_dom UniProtKB/TrEMBL
  Keratin_I UniProtKB/TrEMBL
KEGG Report cfa:491007 UniProtKB/TrEMBL
NCBI Gene KRT27 ENTREZGENE
PANTHER KERATIN, TYPE I CYTOSKELETAL 27 UniProtKB/TrEMBL
  PTHR23239 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
PRINTS TYPE1KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A8C0R3H6 ENTREZGENE
  A0A8C0RLT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SGR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MUF8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:55623 ENTREZGENE