ACTN4 (actinin alpha 4) - Rat Genome Database

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Gene: ACTN4 (actinin alpha 4) Canis lupus familiaris
Analyze
Symbol: ACTN4
Name: actinin alpha 4
RGD ID: 12361210
Description: ENCODES a protein that exhibits actin filament binding (ortholog); chromatin DNA binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); bicellular tight junction assembly (ortholog); negative regulation of cellular component movement (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-cell junction (ortholog); cortical cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: alpha-actinin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,354,993 - 114,427,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,309,693 - 114,427,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,759,618 - 113,832,649 (-)NCBI
ROS_Cfam_1.01114,956,867 - 115,029,926 (-)NCBI
UMICH_Zoey_3.11114,530,067 - 114,602,907 (-)NCBI
UNSW_CanFamBas_1.01114,147,609 - 114,220,650 (-)NCBI
UU_Cfam_GSD_1.01115,186,154 - 115,259,191 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21388638   PMID:22232703   PMID:26504173   PMID:30049798  


Genomics

Comparative Map Data
ACTN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,354,993 - 114,427,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,309,693 - 114,427,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,759,618 - 113,832,649 (-)NCBI
ROS_Cfam_1.01114,956,867 - 115,029,926 (-)NCBI
UMICH_Zoey_3.11114,530,067 - 114,602,907 (-)NCBI
UNSW_CanFamBas_1.01114,147,609 - 114,220,650 (-)NCBI
UU_Cfam_GSD_1.01115,186,154 - 115,259,191 (-)NCBI
ACTN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1938,647,649 - 38,731,589 (+)EnsemblGRCh38hg38GRCh38
GRCh381938,647,649 - 38,731,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371939,138,289 - 39,222,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361943,830,167 - 43,913,010 (+)NCBINCBI36hg18NCBI36
Build 341943,830,166 - 43,913,010NCBI
Celera1935,940,352 - 36,023,163 (+)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1935,584,836 - 35,667,954 (+)NCBIHuRef
CHM1_11939,139,079 - 39,221,980 (+)NCBICHM1_1
Actn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,592,673 - 28,661,799 (-)NCBIGRCm39mm39
GRCm39 Ensembl728,592,673 - 28,661,765 (-)Ensembl
GRCm38728,893,248 - 28,962,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,893,248 - 28,962,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,678,273 - 29,747,299 (-)NCBIGRCm37mm9NCBIm37
MGSCv36728,602,014 - 28,671,040 (-)NCBImm8
Celera723,454,694 - 23,523,720 (-)NCBICelera
Cytogenetic Map7B1NCBI
Actn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2184,182,783 - 84,251,867 (-)NCBI
Rnor_6.0 Ensembl187,078,020 - 87,147,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0187,078,012 - 87,147,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0188,258,630 - 88,327,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,000,723 - 84,073,767 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1184,079,711 - 84,151,876 (-)NCBI
Celera178,572,890 - 78,641,919 (-)NCBICelera
Cytogenetic Map1q21NCBI
Actn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468770,573 - 842,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468770,573 - 841,859 (-)NCBIChiLan1.0ChiLan1.0
ACTN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11944,313,569 - 44,395,508 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,313,569 - 44,395,508 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01935,742,758 - 35,825,321 (+)NCBIMhudiblu_PPA_v0panPan3
Actn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,167,758 - 13,237,529 (+)NCBI
SpeTri2.0NW_0049368011,333,077 - 1,402,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,493,882 - 47,569,609 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,493,834 - 47,565,999 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,045,503 - 43,126,155 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTN4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,290,639 - 33,373,059 (+)NCBI
ChlSab1.1 Ensembl633,290,622 - 33,374,693 (+)Ensembl
Vero_WHO_p1.0NW_02366607311,240,578 - 11,323,802 (+)NCBI
Actn4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479412,042,627 - 12,113,762 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005616611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038468216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038593246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038657071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_541640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_848317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_862275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_862326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000009148   ⟹   ENSCAFP00000008486
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,309,693 - 114,311,761 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000009417   ⟹   ENSCAFP00000008741
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,311,809 - 114,427,959 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000009433   ⟹   ENSCAFP00000008756
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,355,104 - 114,427,959 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000064965   ⟹   ENSCAFP00000048898
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,355,104 - 114,427,959 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000071394   ⟹   ENSCAFP00000063405
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,356,056 - 114,427,912 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000074529   ⟹   ENSCAFP00000047862
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,356,056 - 114,427,991 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084611   ⟹   ENSCAFP00000055136
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,347,019 - 114,427,959 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000093560   ⟹   ENSCAFP00000064987
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1114,310,115 - 114,311,921 (-)Ensembl
RefSeq Acc Id: XM_005616611   ⟹   XP_005616668
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,354,993 - 114,427,997 (-)NCBI
Dog10K_Boxer_Tasha1113,759,618 - 113,832,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038468212   ⟹   XP_038324140
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,530,067 - 114,602,906 (-)NCBI
RefSeq Acc Id: XM_038468213   ⟹   XP_038324141
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,530,067 - 114,602,907 (-)NCBI
RefSeq Acc Id: XM_038468214   ⟹   XP_038324142
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,530,067 - 114,602,904 (-)NCBI
RefSeq Acc Id: XM_038468215   ⟹   XP_038324143
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,530,067 - 114,602,906 (-)NCBI
RefSeq Acc Id: XM_038468216   ⟹   XP_038324144
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11114,530,067 - 114,602,907 (-)NCBI
RefSeq Acc Id: XM_038528967   ⟹   XP_038384895
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01115,186,154 - 115,259,190 (-)NCBI
RefSeq Acc Id: XM_038528968   ⟹   XP_038384896
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01115,186,154 - 115,259,191 (-)NCBI
RefSeq Acc Id: XM_038528969   ⟹   XP_038384897
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01115,186,154 - 115,259,188 (-)NCBI
RefSeq Acc Id: XM_038528970   ⟹   XP_038384898
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01115,186,154 - 115,259,190 (-)NCBI
RefSeq Acc Id: XM_038528971   ⟹   XP_038384899
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01115,186,154 - 115,259,191 (-)NCBI
RefSeq Acc Id: XM_038593242   ⟹   XP_038449170
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01114,147,609 - 114,220,649 (-)NCBI
RefSeq Acc Id: XM_038593243   ⟹   XP_038449171
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01114,147,609 - 114,220,650 (-)NCBI
RefSeq Acc Id: XM_038593244   ⟹   XP_038449172
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01114,147,609 - 114,220,647 (-)NCBI
RefSeq Acc Id: XM_038593245   ⟹   XP_038449173
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01114,147,609 - 114,220,649 (-)NCBI
RefSeq Acc Id: XM_038593246   ⟹   XP_038449174
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01114,147,609 - 114,220,650 (-)NCBI
RefSeq Acc Id: XM_038657066   ⟹   XP_038512994
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,956,867 - 115,029,925 (-)NCBI
RefSeq Acc Id: XM_038657067   ⟹   XP_038512995
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,956,867 - 115,029,926 (-)NCBI
RefSeq Acc Id: XM_038657068   ⟹   XP_038512996
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,956,867 - 115,029,923 (-)NCBI
RefSeq Acc Id: XM_038657070   ⟹   XP_038512998
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,956,867 - 115,029,925 (-)NCBI
RefSeq Acc Id: XM_038657071   ⟹   XP_038512999
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01114,956,867 - 115,029,926 (-)NCBI
RefSeq Acc Id: XM_541640   ⟹   XP_541640
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,354,993 - 114,427,997 (-)NCBI
Dog10K_Boxer_Tasha1113,759,618 - 113,832,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_848317   ⟹   XP_853410
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,354,993 - 114,427,996 (-)NCBI
Dog10K_Boxer_Tasha1113,759,618 - 113,832,646 (-)NCBI
Sequence:
RefSeq Acc Id: XM_862275   ⟹   XP_867368
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,354,993 - 114,427,997 (-)NCBI
Dog10K_Boxer_Tasha1113,759,618 - 113,832,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_862326   ⟹   XP_867419
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,354,993 - 114,427,997 (-)NCBI
Dog10K_Boxer_Tasha1113,759,618 - 113,832,648 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005616668   ⟸   XM_005616611
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_867419   ⟸   XM_862326
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_541640   ⟸   XM_541640
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_853410   ⟸   XM_848317
- Peptide Label: isoform X3
- UniProtKB: E2R5T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_867368   ⟸   XM_862275
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCAFP00000047862   ⟸   ENSCAFT00000074529
RefSeq Acc Id: ENSCAFP00000048898   ⟸   ENSCAFT00000064965
RefSeq Acc Id: ENSCAFP00000055136   ⟸   ENSCAFT00000084611
RefSeq Acc Id: ENSCAFP00000008486   ⟸   ENSCAFT00000009148
RefSeq Acc Id: ENSCAFP00000008756   ⟸   ENSCAFT00000009433
RefSeq Acc Id: ENSCAFP00000008741   ⟸   ENSCAFT00000009417
RefSeq Acc Id: ENSCAFP00000064987   ⟸   ENSCAFT00000093560
RefSeq Acc Id: ENSCAFP00000063405   ⟸   ENSCAFT00000071394
RefSeq Acc Id: XP_038324144   ⟸   XM_038468216
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038324141   ⟸   XM_038468213
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038324143   ⟸   XM_038468215
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038324140   ⟸   XM_038468212
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038324142   ⟸   XM_038468214
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038449174   ⟸   XM_038593246
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038449171   ⟸   XM_038593243
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038449173   ⟸   XM_038593245
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038449170   ⟸   XM_038593242
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038449172   ⟸   XM_038593244
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038512999   ⟸   XM_038657071
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038512995   ⟸   XM_038657067
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038512998   ⟸   XM_038657070
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038512994   ⟸   XM_038657066
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038512996   ⟸   XM_038657068
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038384899   ⟸   XM_038528971
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038384896   ⟸   XM_038528968
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038384898   ⟸   XM_038528970
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038384895   ⟸   XM_038528967
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038384897   ⟸   XM_038528969
- Peptide Label: isoform X3
Protein Domains
Calponin-homology (CH)   EF-hand   Galectin

Promoters
RGD ID:13682322
Promoter ID:EPDNEW_C390
Type:initiation region
Name:ACTN4_1
Description:actinin alpha 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11114,428,010 - 114,428,070EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000008741 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000008756 UniProtKB/TrEMBL
  ENSCAFP00000047862 UniProtKB/TrEMBL
  ENSCAFP00000048898 UniProtKB/TrEMBL
  ENSCAFP00000055136 UniProtKB/TrEMBL
  ENSCAFP00000063405 UniProtKB/TrEMBL
  ENSCAFP00000064987 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009417 UniProtKB/TrEMBL
  ENSCAFT00000009433 UniProtKB/TrEMBL
  ENSCAFT00000064965 UniProtKB/TrEMBL
  ENSCAFT00000071394 UniProtKB/TrEMBL
  ENSCAFT00000074529 UniProtKB/TrEMBL
  ENSCAFT00000084611 UniProtKB/TrEMBL
  ENSCAFT00000093560 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_Ca_insen UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Galectin-like UniProtKB/TrEMBL
  Galectin_7 UniProtKB/TrEMBL
  Galectin_CRD UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
NCBI Gene ACTN4 ENTREZGENE
PANTHER PTHR11346 UniProtKB/TrEMBL
  PTHR11346:SF107 UniProtKB/TrEMBL
Pfam EF-hand_8 UniProtKB/TrEMBL
  EFhand_Ca_insen UniProtKB/TrEMBL
  Gal-bind_lectin UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  GALECTIN UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  Gal-bind_lectin UniProtKB/TrEMBL
  GLECT UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A5F4C146_CANLF UniProtKB/TrEMBL
  A0A5F4C3X9_CANLF UniProtKB/TrEMBL
  A0A5F4CLD9_CANLF UniProtKB/TrEMBL
  A0A5F4DC86_CANLF UniProtKB/TrEMBL
  A0A5F4DE55_CANLF UniProtKB/TrEMBL
  E2R5T9 ENTREZGENE, UniProtKB/TrEMBL
  L7N071_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:37550 ENTREZGENE