VTN (vitronectin) - Rat Genome Database

Name: VTN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: VTN (vitronectin) Canis lupus familiaris

Analyze

Symbol:

VTN

Name:

vitronectin

RGD ID:

12359862

Description:

ENCODES a protein that exhibits collagen binding (ortholog); heparin binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell-matrix adhesion (ortholog); extracellular matrix organization (ortholog); liver regeneration (ortholog); PARTICIPATES IN forkhead class A signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Alveolar Bone Loss (ortholog); Churg-Strauss syndrome (ortholog); coronary artery disease (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VTN (vitronectin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Vtn (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Vtn (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vtn (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VTN (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vtn (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VTN (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VTN (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vtn (vitronectin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SEBOX (SEBOX homeobox)	HGNC	EggNOG, OrthoDB

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	42,617,860 - 42,620,825 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	42,614,941 - 42,630,864 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	41,774,787 - 41,777,752 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	43,437,036 - 43,440,001 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	43,434,650 - 43,439,934 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	42,221,266 - 42,224,231 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	42,512,485 - 42,515,450 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	42,589,551 - 42,592,516 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alveolar Bone Loss (ISO)

Churg-Strauss syndrome (ISO)

coronary artery disease (ISO)

Crohn's disease (ISO)

Diabetic Nephropathies (ISO)

diabetic retinopathy (ISO)

genetic disease (ISO)

granulomatosis with polyangiitis (ISO)

liver cirrhosis (ISO)

proteinuria (ISO)

Radiation Pneumonitis (ISO)

thrombosis (ISO)

visual epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion mediated by integrin (IEA)

cell migration (IEA)

cell-matrix adhesion (IEA,ISO)

endodermal cell differentiation (IEA)

extracellular matrix organization (IEA,ISO)

immune response (IEA)

liver regeneration (ISO)

oligodendrocyte differentiation (IEA)

positive regulation of cell-substrate adhesion (IEA,ISO)

positive regulation of peptidyl-tyrosine phosphorylation (IEA)

positive regulation of receptor-mediated endocytosis (IEA)

positive regulation of smooth muscle cell migration (IEA)

protein polymerization (ISO)

regulation of cell adhesion (IEA)

smooth muscle cell-matrix adhesion (IEA)

vesicle-mediated transport (IEA)

Cellular Component

basement membrane (ISO)

collagen-containing extracellular matrix (IEA,ISO)

endoplasmic reticulum (IEA)

extracellular matrix (IEA)

extracellular region (IEA)

extracellular space (IEA,ISO)

Golgi lumen (ISO)

intracellular membrane-bounded organelle (IEA)

nucleus (IEA)

peptidase inhibitor complex (IEA,ISO)

protein complex involved in cell-matrix adhesion (IEA,ISO)

rough endoplasmic reticulum lumen (ISO)

Molecular Function

collagen binding (ISO)

DNA binding (IEA)

extracellular matrix binding (IEA)

heparin binding (ISO)

identical protein binding (ISO)

integrin binding (IEA)

polysaccharide binding (IEA)

protein binding (ISO)

scavenger receptor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

forkhead class A signaling pathway (ISO)

vascular endothelial growth factor signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

VTN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	42,617,860 - 42,620,825 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	42,614,941 - 42,630,864 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	41,774,787 - 41,777,752 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	43,437,036 - 43,440,001 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	43,434,650 - 43,439,934 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	42,221,266 - 42,224,231 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	42,512,485 - 42,515,450 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	42,589,551 - 42,592,516 (-)	NCBI		UU_Cfam_GSD_1.0

VTN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	28,367,284 - 28,370,307 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	28,367,284 - 28,373,091 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	26,694,305 - 26,697,328 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	23,718,425 - 23,721,500 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	23,718,424 - 23,721,844	NCBI
Celera	17	23,556,056 - 23,559,131 (-)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	22,902,707 - 22,905,782 (-)	NCBI		HuRef
CHM1_1	17	26,757,231 - 26,760,306 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	29,309,135 - 29,312,158 (-)	NCBI		T2T-CHM13v2.0

Vtn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	78,389,946 - 78,393,151 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	78,389,917 - 78,393,150 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	78,499,120 - 78,502,325 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	78,499,091 - 78,502,324 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	78,312,622 - 78,315,827 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	78,315,481 - 78,318,519 (+)	NCBI		MGSCv36	mm8
Celera	11	88,131,193 - 88,134,398 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.74	NCBI

Vtn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	63,892,782 - 63,895,862 (+)	NCBI		GRCr8
mRatBN7.2	10	63,394,732 - 63,397,812 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	63,394,719 - 63,397,810 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	68,027,371 - 68,030,455 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	67,532,702 - 67,535,786 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	63,002,232 - 63,005,314 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	65,767,960 - 65,771,040 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	65,767,053 - 65,771,038 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	65,872,580 - 65,875,660 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	64,609,242 - 64,612,322 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	64,622,874 - 64,625,943 (+)	NCBI
Celera	10	62,371,307 - 62,374,387 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

Vtn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	4,765,193 - 4,771,019 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	4,765,078 - 4,768,027 (+)	NCBI	ChiLan1.0	ChiLan1.0

VTN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	36,085,584 - 36,091,406 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	37,965,973 - 37,971,785 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	28,403,813 - 28,407,202 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	28,906,508 - 28,909,583 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	28,906,508 - 28,909,583 (+)	Ensembl	panpan1.1		panPan2

Vtn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	41,644,330 - 41,647,294 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	4,522,074 - 4,525,336 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	4,522,275 - 4,525,245 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VTN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	44,650,534 - 44,655,355 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	44,650,532 - 44,653,916 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	5,021 - 8,459 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VTN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	22,133,903 - 22,138,077 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	22,133,138 - 22,136,815 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	7,990,668 - 7,994,840 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vtn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	966,452 - 973,337 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	970,288 - 973,344 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in VTN
91 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High			6	6		6
Medium
Low	4	5	16		6		6	6	12	1	10	6
Below cutoff	1									7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038486389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038548227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038612192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY885413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000029633 ⟹ ENSCAFP00000027540

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	42,614,941 - 42,616,348 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000029640 ⟹ ENSCAFP00000027547

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	42,617,860 - 42,630,864 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000064386 ⟹ ENSCAFP00000050199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	42,617,860 - 42,620,751 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000090328 ⟹ ENSCAFP00000066346

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	42,614,941 - 42,620,693 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845012746 ⟹ ENSCAFP00845009941

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	43,434,650 - 43,439,929 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845012787 ⟹ ENSCAFP00845009971

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	43,434,650 - 43,435,524 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845012802 ⟹ ENSCAFP00845009983

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	43,437,039 - 43,439,934 (-)	Ensembl

RefSeq Acc Id:

XM_038486389 ⟹ XP_038342317

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	42,221,266 - 42,224,231 (-)	NCBI

RefSeq Acc Id:

XM_038548227 ⟹ XP_038404155

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	42,589,551 - 42,592,516 (-)	NCBI

RefSeq Acc Id:

XM_038612192 ⟹ XP_038468120

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	42,512,485 - 42,515,450 (-)	NCBI

RefSeq Acc Id:

XM_038677450 ⟹ XP_038533378

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	43,437,036 - 43,440,001 (-)	NCBI

RefSeq Acc Id:

XM_848947 ⟹ XP_854040

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	42,617,860 - 42,620,825 (-)	NCBI
Dog10K_Boxer_Tasha	9	41,774,787 - 41,777,752 (-)	NCBI

Sequence:

show sequence

AGAGCAGCAGACAAGGCAGCTCCTCTTTCTGGTTCCCTCCCTCCCTGTCCACACCTCTTCCCTC
CCTTCCTCAGGCATCGCAGTGGAGACCGCATAGAGCCCAGTTCAGGGCTAGAAGCTAGCAGCCC
TACCATGGCATTCCCCAGGCCCCTGCTGGTGCTAGCCCTGCTGGCATGGGTTGTTCTGGCTGAC
CAAGAATCATGCAAGGGCCGCTGCACAGAGGGCTTCAATGCTGACAGGAAGTGTCAGTGTGACG
AGCTCTGCTCTTACTACCAGAGCTGCTGCGAGGACTACGTGGCCGAGTGCAAACCCCAAGTGAC
TCGTGGGGATGTATTCGCTCTGCCAGAAGATGAGTATGGGGTCATTGACGATCATGAGGGGACC
AGAGAACAGAGCGTCCTCACACAGCTGGAGAGTACCACCCTGAGCCCTGGCCTACAGGCCCAGT
CTGAAAAGTTTCCTGCCCAGGTACCTATTCTGATCCCTGAGGAAGAGGCTCCAGGACCCGGGCA
GGGGACCTTAGTGCTTGAGGCCCCTGATCAAGACATCTCTGAGTCCGCAGCAGAGGAGGAGCTA
TGTAGTGGGAAACCCTTTGACGCCTTCACTGACCTCAAGAATGGCTCCCTCTTTGCCTTCCGAG
GGCAGTACTGTTATGAGCTGGATGAAAAGGCAGTGAGACCTGGGTACCCCAAGCTTATCCGAGA
TGTCTGGGGCATTGAGGGCCCCATTGATGCAGCCTTCACCCGCATCAACTGTCAGGGGAAGACC
TATCTCTTCAAGGGTAGTCAGTACTGGCGCTTCGAGGATGGTGTTCTGGACCCAGATTACCCCC
GCAACATCTCTGAAGGCTTCAAGGGCATTCCGGACAACGTGGACGCAGCCTTTGCTCTCCCTGC
TCGCAGCTACAGTGGCCGGGAGCGGGTCTACTTCTTCAAGGGGAGACAGTACTGGGAGTATGAG
TTCCAGCAGCAGCCCAGTCAGGAGGAGTGTGAGGGCAGCTCCCTGTCCACCGTGTTTGAACACT
TTGCCCTGCTGCAGAGGGACAGCTGGGAGACCTTCTTTGAGCTTCTCTTCTGGAACAGACCCTC
TGGTGGTGCTGGAGAGCCCGGGTTCATCAGCCAGGACTGGCCTGGTTTGCCTAGGCAGGTGGAC
GCGGCCATGGCTGGCCGCATCTACATCTCAGGGTCGGCACCCCGATCCTGGGTCAAGAAGCTGA
ATCCTAAGCGGCGCAACCGTAAACGCTACCGTTCACGCCGTAACCGTGGCCGAGGCCGTAGCCG
GACCTCCCAGCGGCAATCCCGCTCAGCCTGGCTGTCCTGGTTCTCCAGTGAGGAGAGTGGCCTA
GACACCTACAACTATGATGACTACAACATGGACTGGCTTGTGCCGGCCACCTGTGAGCCCATCC
AAAGTGTTTACTTCTTCTCAGAAGACAAGTACTACCGAGTCAACCTTCGCACACGGCGAGTGGA
CACTGTGAGCCCTCCTTACCCACGCTCCATCGCCCAGTACTGGCTAGGCTGCTCAGCCCCCAGC
CCCCAGTAGGAATCTGAGCCTACACAGCTGATCCCTCCACTGCTTCCTCCTCAACCTCTTTCTC
CCAGCCCAATAAAGATTCTATGCCCCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038342317	(Get FASTA)	NCBI Sequence Viewer
	XP_038404155	(Get FASTA)	NCBI Sequence Viewer
	XP_038468120	(Get FASTA)	NCBI Sequence Viewer
	XP_038533378	(Get FASTA)	NCBI Sequence Viewer
	XP_854040	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAX82465	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000027547.5
	ENSCAFP00030022192.1
	ENSCAFP00040032605.1
	ENSCAFP00845009941.1
	ENSCAFP00845009983
	ENSCAFP00845009983.1

RefSeq Acc Id:

XP_854040 ⟸ XM_848947

- UniProtKB:

A0A8C0KGK5 (UniProtKB/TrEMBL), A0A8C0T6T8 (UniProtKB/TrEMBL), A0A8I3N025 (UniProtKB/TrEMBL), A0A8C0NBU9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFPRPLLVLALLAWVVLADQESCKGRCTEGFNADRKCQCDELCSYYQSCCEDYVAECKPQVTR
GDVFALPEDEYGVIDDHEGTREQSVLTQLESTTLSPGLQAQSEKFPAQVPILIPEEEAPGPGQG
TLVLEAPDQDISESAAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRDV
WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGFKGIPDNVDAAFALPAR
SYSGRERVYFFKGRQYWEYEFQQQPSQEECEGSSLSTVFEHFALLQRDSWETFFELLFWNRPSG
GAGEPGFISQDWPGLPRQVDAAMAGRIYISGSAPRSWVKKLNPKRRNRKRYRSRRNRGRGRSRT
SQRQSRSAWLSWFSSEESGLDTYNYDDYNMDWLVPATCEPIQSVYFFSEDKYYRVNLRTRRVDT
VSPPYPRSIAQYWLGCSAPSPQ

hide sequence

RefSeq Acc Id:

ENSCAFP00000050199 ⟸ ENSCAFT00000064386

RefSeq Acc Id:

ENSCAFP00000027547 ⟸ ENSCAFT00000029640

RefSeq Acc Id:

ENSCAFP00000027540 ⟸ ENSCAFT00000029633

RefSeq Acc Id:

ENSCAFP00000066346 ⟸ ENSCAFT00000090328

RefSeq Acc Id:

XP_038342317 ⟸ XM_038486389

RefSeq Acc Id:

XP_038468120 ⟸ XM_038612192

RefSeq Acc Id:	XP_038533378 ⟸ XM_038677450
- UniProtKB:	A0A8C0KGK5 (UniProtKB/TrEMBL), A0A8C0T6T8 (UniProtKB/TrEMBL), A0A8I3N025 (UniProtKB/TrEMBL), A0A8C0NBU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038404155 ⟸ XM_038548227
- UniProtKB:	A0A8C0KGK5 (UniProtKB/TrEMBL), A0A8C0NBU9 (UniProtKB/TrEMBL), A0A8C0T6T8 (UniProtKB/TrEMBL), A0A8I3N025 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845009971 ⟸ ENSCAFT00845012787

RefSeq Acc Id:

ENSCAFP00845009983 ⟸ ENSCAFT00845012802

RefSeq Acc Id:

ENSCAFP00845009941 ⟸ ENSCAFT00845012746

Protein Domains

Homeobox SMB

Promoters

RGD ID:

13684672

Promoter ID:

EPDNEW_C2740

Type:

initiation region

Name:

VTN_1

Description:

vitronectin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	42,620,732 - 42,620,792	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018672	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013731	UniProtKB/TrEMBL
	ENSCAFG00040020222	UniProtKB/TrEMBL
	ENSCAFG00845007195	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000029640.5	UniProtKB/TrEMBL
	ENSCAFT00030025413.1	UniProtKB/TrEMBL
	ENSCAFT00040037412.1	UniProtKB/TrEMBL
	ENSCAFT00845012746.1	UniProtKB/TrEMBL
	ENSCAFT00845012802	ENTREZGENE
	ENSCAFT00845012802.1	UniProtKB/TrEMBL
Gene3D-CATH	2.110.10.10	UniProtKB/TrEMBL
	4.10.410.20	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Hemopexin-like_dom	UniProtKB/TrEMBL
	Hemopexin-like_dom_sf	UniProtKB/TrEMBL
	Hemopexin-like_repeat	UniProtKB/TrEMBL
	Hemopexin_CS	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Somatomedin_B-like_dom_sf	UniProtKB/TrEMBL
	Somatomedin_B_chordata	UniProtKB/TrEMBL
	Somatomedin_B_dom	UniProtKB/TrEMBL
KEGG Report	cfa:480621	UniProtKB/TrEMBL
NCBI Gene	VTN	ENTREZGENE
PANTHER	HEMOPEXIN DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	VITRONECTIN	UniProtKB/TrEMBL
Pfam	Hemopexin	UniProtKB/TrEMBL
	Homeodomain	UniProtKB/TrEMBL
	Somatomedin_B	UniProtKB/TrEMBL
PRINTS	SOMATOMEDINB	UniProtKB/TrEMBL
PROSITE	HEMOPEXIN	UniProtKB/TrEMBL
	HEMOPEXIN_2	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	SMB_1	UniProtKB/TrEMBL
	SMB_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
	SM00120	UniProtKB/TrEMBL
	SM00201	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
	SSF50923	UniProtKB/TrEMBL
	SSF90188	UniProtKB/TrEMBL
UniProt	A0A8C0KGK5	ENTREZGENE
	A0A8C0NBU9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0T6T8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N025	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N567_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:97230	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)