LHX6 (LIM homeobox 6) - Rat Genome Database

Name: LHX6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: LHX6 (LIM homeobox 6) Canis lupus familiaris

Analyze

Symbol:

LHX6

Name:

LIM homeobox 6

RGD ID:

12359059

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN cerebral cortex GABAergic interneuron migration (ortholog); cerebral cortex neuron differentiation (ortholog); cerebral cortex radially oriented cell migration (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial intermembrane space (inferred); mitochondrial respiratory chain complex I (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LIM/homeobox protein Lhx6

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LHX6 (LIM homeobox 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Lhx6 (LIM homeobox protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LHX6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LHX6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LHX6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lhx6 (LIM homeobox 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	60,348,529 - 60,374,037 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	60,348,335 - 60,374,024 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,543,996 - 59,581,491 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	61,263,724 - 61,301,199 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	61,263,679 - 61,289,115 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	60,037,892 - 60,075,327 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	60,354,214 - 60,391,774 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,442,894 - 60,480,404 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cerebral cortex GABAergic interneuron migration (ISO)

cerebral cortex neuron differentiation (ISO)

cerebral cortex radially oriented cell migration (ISO)

cerebral cortex tangential migration (ISO)

forebrain neuron development (IEA,ISO)

forebrain neuron fate commitment (ISO)

mitochondrial electron transport, NADH to ubiquinone (IEA)

neuron maturation (ISO)

neuron migration (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

mitochondrial intermembrane space (IEA)

mitochondrial respiratory chain complex I (IEA)

mitochondrion (IEA)

nucleus (IEA)

respirasome (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LHX6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	60,348,529 - 60,374,037 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	60,348,335 - 60,374,024 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,543,996 - 59,581,491 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	61,263,724 - 61,301,199 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	61,263,679 - 61,289,115 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	60,037,892 - 60,075,327 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	60,354,214 - 60,391,774 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,442,894 - 60,480,404 (+)	NCBI		UU_Cfam_GSD_1.0

LHX6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	122,202,582 - 122,228,957 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	122,202,577 - 122,229,626 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	124,964,861 - 124,991,236 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,004,679 - 124,030,840 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	95,613,158 - 95,639,326 (-)	NCBI		Celera
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	94,579,638 - 94,605,760 (-)	NCBI		HuRef
CHM1_1	9	125,112,910 - 125,139,147 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	134,400,069 - 134,426,451 (-)	NCBI		T2T-CHM13v2.0

Lhx6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	35,971,962 - 35,996,004 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	35,971,965 - 35,995,420 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	36,081,950 - 36,105,992 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	36,081,953 - 36,105,408 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	35,937,473 - 35,960,928 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	35,905,548 - 35,927,280 (-)	NCBI		MGSCv36	mm8
Celera	2	35,785,674 - 35,809,139 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.17	NCBI

Lhx6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	39,829,846 - 39,853,681 (-)	NCBI		GRCr8
mRatBN7.2	3	19,432,439 - 19,456,268 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	19,433,494 - 19,456,061 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	22,510,924 - 22,534,512 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	31,095,849 - 31,119,442 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	29,343,118 - 29,366,747 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	15,409,349 - 15,433,504 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	15,411,939 - 15,433,252 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	20,718,972 - 20,742,583 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	15,192,524 - 15,216,076 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	15,088,870 - 15,113,701 (-)	NCBI
Celera	3	14,144,852 - 14,168,405 (-)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

Lhx6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,834,547 - 5,858,113 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	5,835,230 - 5,858,096 (+)	NCBI	ChiLan1.0	ChiLan1.0

LHX6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	17,117,476 - 17,172,379 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	17,119,825 - 17,174,732 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	93,303,447 - 93,353,896 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	121,668,585 - 121,693,605 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	121,670,707 - 121,694,378 (-)	Ensembl	panpan1.1		panPan2

Lhx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	190,823,007 - 190,847,434 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	10,591,532 - 10,616,017 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	10,591,532 - 10,616,017 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LHX6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	262,295,353 - 262,322,530 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	262,297,557 - 262,322,777 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	294,597,333 - 294,622,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LHX6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	17,364,693 - 17,392,756 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	17,366,826 - 17,386,276 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	25,656,604 - 25,683,197 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lhx6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	13,066,703 - 13,097,468 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	13,066,632 - 13,092,006 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LHX6
302 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			2						8		2	5
Low	5	5	20	6	6	6	6	6	4	8	8	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003435342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005625407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005625408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038620640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000032295 ⟹ ENSCAFP00000030074

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	60,348,335 - 60,371,832 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000045524 ⟹ ENSCAFP00000042212

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	60,348,580 - 60,374,024 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000067225 ⟹ ENSCAFP00000043933

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	60,348,335 - 60,374,024 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845024987 ⟹ ENSCAFP00845019656

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	61,263,679 - 61,289,115 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845024997 ⟹ ENSCAFP00845019665

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	61,263,679 - 61,287,227 (+)	Ensembl

RefSeq Acc Id:

XM_003435342 ⟹ XP_003435390

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	60,348,529 - 60,371,977 (+)	NCBI
Dog10K_Boxer_Tasha	9	59,544,001 - 59,567,366 (+)	NCBI

Sequence:

show sequence

CCGGGGGCCTGGGCTCTGCTGGGGCTCCTGCTTCAGGCTCTGCTCCCGCAGTGGCCGTGGCCCG
GCTCCGCGCGGCTCTCCGCCGCCGCTTCCCGGCCCATGCATGTACTGGAAGCATGAGACCGCCG
CCCCGGCGCTGCCCGAGGGCTGCCGGCTGCCGGCCGAGGGCGGCCCCGCCACCGACCAGGTGAT
GGCCCAGCCGGGGTCCGGCTGCAAAGCGACCACCCGCTGCCTTGAAGGGACCGCGCCGCCCGCC
ATGGCTCAGTCGGACGCCGAGGCCCTGGCGGGCGCTCTGGACAAGGACGAGGGTCGGGCCTCCC
CCTGCACGCCCAGCACGCCATCCGTCTGCTCGCCGCCTTCCGCCGCTTCCTCCGTGCCGTCCGC
CGGCAAGAACATCTGCGCCAGTTGTGGCCTCGAGATCCTGGACCGGGACCTGCTCAAGGTCAAC
AACCTCATCTGGCACGTGCGGTGCCTCGAGTGCTCCGTGTGTCGCACGTCGCTGAGGCAGCAGA
ACAGCTGCTACATCAAGAATAAGGAAATCTTCTGCAAGATGGACTACTTCAGCCGATTTGGGAC
CAAGTGTGCACGGTGCGGTCGACAGATCTATGCCAGCGATTGGGTGCGGCGGGCACGCGGCAAT
GCCTATCATCTGGCCTGCTTCGCCTGCTTTTCATGCAAGCGCCAGCTGTCCACGGGCGAGGAGT
TTGGCCTGGTGGAGGAGAAGGTGCTGTGCCGCATCCACTACGACACCATGATCGAGAACCTCAA
GAGAGCTGCTGAGAACGGGAACGGCCTCACGCTGGAGGGGGCGGTGCCCTCGGAGCAGGACAGT
CAGCCCAAACCGGCCAAGCGCGCGCGCACGTCCTTCACCGCGGAGCAGCTGCAGGTGATGCAGG
CGCAGTTCGCGCAGGACAACAACCCGGACGCACAGACGCTGCAGAAGCTCGCAGACATGACGGG
CCTCAGCCGGAGGGTCATCCAGGTGTGGTTCCAAAACTGCCGGGCGCGTCATAAAAAGCACACA
CCGCAGCATCCTGTGCCGCCCTCCGGGGCGCCGCCGTCCCGCCTCCCTTCCGCCCTGCCCGAGG
ACATCCACTACTCCCCGTTCAGCAGCCCCGAGCGGGCGCGCATGGTCACCCTGCACGGCTACAT
CGAGAGTCAGGTACAGTGCGGACAGGTGCACTGCCGGCTGCCTTACACCGCACCCCCCGTCCAC
CTCAAAGCCGACATGGATGGGCCACTCTCCAACCGGGGTGAGAAGGTCATCCTTTTTCAGTACT
AATGCTGTCTGTCCACGGGCACCCCACCACTGCCCCACAGCCGCCGAAAGCTGGTGTCCACGCC
ACTGCCAGGGATCCACCCGCGCCACATCCGCCCTTCACCCGCTGTCCTGATCGCCTCTGGCTGG
ACCCCTGGGCCTGGCCTTC

hide sequence

RefSeq Acc Id:

XM_005625407 ⟹ XP_005625464

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	60,348,530 - 60,374,037 (+)	NCBI
Dog10K_Boxer_Tasha	9	59,544,001 - 59,569,431 (+)	NCBI

Sequence:

show sequence

CGGGGGCCTGGGCTCTGCTGGGGCTCCTGCTTCAGGCTCTGCTCCCGCAGTGGCCGTGGCCCGG
CTCCGCGCGGCTCTCCGCCGCCGCTTCCCGGCCCATGCATGTACTGGAAGCATGAGACCGCCGC
CCCGGCGCTGCCCGAGGGCTGCCGGCTGCCGGCCGAGGGCGGCCCCGCCACCGACCAGGTGATG
GCCCAGCCGGGGTCCGGCTGCAAAGCGACCACCCGCTGCCTTGAAGGGACCGCGCCGCCCGCCA
TGGCTCAGTCGGACGCCGAGGCCCTGGCGGGCGCTCTGGACAAGGACGAGGGTCGGGCCTCCCC
CTGCACGCCCAGCACGCCATCCGTCTGCTCGCCGCCTTCCGCCGCTTCCTCCGTGCCGTCCGCC
GGCAAGAACATCTGCGCCAGTTGTGGCCTCGAGATCCTGGACCGGGACCTGCTCAAGGTCAACA
ACCTCATCTGGCACGTGCGGTGCCTCGAGTGCTCCGTGTGTCGCACGTCGCTGAGGCAGCAGAA
CAGCTGCTACATCAAGAATAAGGAAATCTTCTGCAAGATGGACTACTTCAGCCGATTTGGGACC
AAGTGTGCACGGTGCGGTCGACAGATCTATGCCAGCGATTGGGTGCGGCGGGCACGCGGCAATG
CCTATCATCTGGCCTGCTTCGCCTGCTTTTCATGCAAGCGCCAGCTGTCCACGGGCGAGGAGTT
TGGCCTGGTGGAGGAGAAGGTGCTGTGCCGCATCCACTACGACACCATGATCGAGAACCTCAAG
AGAGCTGCTGAGAACGGGAACGGCCTCACGCTGGAGGGGGCGGTGCCCTCGGAGCAGGACAGTC
AGCCCAAACCGGCCAAGCGCGCGCGCACGTCCTTCACCGCGGAGCAGCTGCAGGTGATGCAGGC
GCAGTTCGCGCAGGACAACAACCCGGACGCACAGACGCTGCAGAAGCTCGCAGACATGACGGGC
CTCAGCCGGAGGGTCATCCAGGTGTGGTTCCAAAACTGCCGGGCGCGTCATAAAAAGCACACAC
CGCAGCATCCTGTGCCGCCCTCCGGGGCGCCGCCGTCCCGCCTCCCTTCCGCCCTGCCCGAGGA
CATCCACTACTCCCCGTTCAGCAGCCCCGAGCGGGCGCGCATGGTCACCCTGCACGGCTACATC
GAGAGTCATCCTTTTTCAGTACTAATGCTGTCTGTCCACGGGCACCCCACCACTGCCCCACAGC
CGCCGAAAGCTGGTGTCCACGCCACTGCCAGGGATCCACCCGCGCCACATCCGCCCTTCACCCG
CTGTCCTGATCGCCTCTGGCTGGACCCCTGGGCCTGGCCTTCCCTTCTCCTGCTGAGAACCAGA
ACCTGCCAAGGCACCACGGAGTCCTCCTCTCGGAAGGCAGAGCTCCCTGAAATTTGGAATCAGG
GTGAAAAACAACGGCCTGTTTTTCCATTTAGACAGGAGTCATCTTCAACTTAAGCTGATTACAA
TAGCAAAAGGCCAAAGGCCAAATTGAATCTTGCAGCGCCAACAGCCTTCTAATTTACAGGTTTT
CTTTCTTCCCATCCTGGCCTTTATTTACTTCTTCCTTGCAACCATCTCTGAATTCCGAATAGCC
GACAACCCCCAATGTTATCCACTCTGTTGCTTTTGTCTGGAAAACTCTACAGTGTTTGTGGGAT
GTCCCCAAAGGAAAGCTATGTTCTAATTTTATCATTTCCATCTGTCTGGTTATGTCAAGTTAAT
TCAGAGAGAGAAGAGACACTGACCAACCCTGAGAGGCCCAACAGGGCAGAGATGGAGGCCGGTC
CAGACCAAGAGGCAGGGGGATAGGCGGGGGCTGGGAGGGGGGTGGCCAGGACTCCCACTGGAGA
ACGACGACGTAGCATGCTGGGTGTGGGAGGCACTAACTATTTCAAGGAGAGAGAAGAGAAAACT
CGGGGTATATATGGGGAGACTCTGTTCCTACCTAGTTATCTGGCATCCATACAGGACAGCTGGC
AGAAATGTTACTTGATATGTATGAGGGCATTTCTGAATGCTTGTGCCGGTTAGAGTCAGGGGCC
CTTGTTGGCTACTTGCTGACTCCTGATGGGGGCACTTGGGCCCCCAAGGGCCATGGGGGCTTCC
TTGGAGGGAGGGGCCCTTCCTGGGGGGAGCTGGGGAAATGGAGCCCGGGGACATGGTGGTAAGA
ATGCTAATTCTGGACCCATTTCTGAGTAGAGAGAAGGCGCTTGCTGCCTAGGTGAACCTGCTGA
GCCCAGAATTGCAGGGGACACTGGTGGGCTCCCCCAGTACCCCTGTGCAGAGCCAGCGCCTTCC
CCCACTCGGAAATGTGGAGGCCAGACACGGCTGTGCTCACGACCACCCTATTCTGCTGCAACTC
TTCCACCCCAAACAAAAGGGCTTGGGCTGCACAAGACCACGATTTATGTTTTCAGGAGACGCCC
GTTTGTCCCAAGCTTATCCTGTAATTTCAGAATTACTTAGTGTCCTGATGCATTACCTATTAGA
GGCTGCTAGTAAGCATGTTCTAGCCCAAGTCCTCCCTCCTGCTTTGGTTAACCCGATACATTGC
TTTTGGAAGGAGACTCTAGGACCGGGAAAGCATGTTCATGGCACATACGTATCTGCTGTCCCTG
CTTTTGCCCATGGTGGACACCGCTGATTGACTGCATCCCTCTCAGAGTCTGGATAAGGTTTCGG
AATCCAAATGCCTGAAGTTCGGCCCTTAAAACGAATACCTACCTGCCTTTCTTGCTCTGGGACC
TGGAGGAGGGCGAGGCACAGGTGTAGCCTGAGAAGGGAACCTGCTTCCTCTCCCTTCCAAAGAC
AGTTCCATGGGACTCAGAGCCAAGCGGAGGTAGCACCGGAATGCAGTCAGCGCAGCCCTGTTCA
TCCCCTGAATAGCCGATACCTGGCACTGCACAGGATGCTGATGTTAGCAAGAGAAGCTTGGGCC
CGATCCCTGGTGAGTGGGGAGCTCTCATGTTTCCTTTGATTTTTTGCTCCTGGTGATAGAAGCC
CTGAGCACAGCCATGTGGTAAGTGGCCAGCCAAGCCCTGCCCAGGGTCACCTAGTTCCCACTCT
GCCTTGAGCCTCCCGCCTGGAGGTCTGTTCCTTGCGTGGATCACGTGGTTGTAGCATGTTGCCA
TTCAGACATGTCTCCACTAGCCTGTTAGAGCAGCCTGGGAACGCACAGGCCACCAAGACTATTT
ATTTAAATATAAAACAGAGGGAGAAACACACACACACATGGAAAAAAAAAAATTGTAAGCACTT
TTTTGGTAAAACCAATGTCTGTTTTGTTACATACCTTTCATGTTGTGCTTTGTAAATGTCCTAT
TTGTGTAATAAATAAAGTTAATGCAAGTAGAAGTGCTGGCACTTAAATCCAGAA

hide sequence

RefSeq Acc Id:

XM_005625408 ⟹ XP_005625465

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	60,348,955 - 60,374,037 (+)	NCBI
Dog10K_Boxer_Tasha	9	59,544,389 - 59,569,431 (+)	NCBI

Sequence:

show sequence

GGCGCTGATAGCGCGATGCGCCGGGGGTTGTGCTGGCGCAACGCTGAGAATCCCGACGCGGGGC
CGGTGATGGCCCAGCCGGGGTCCGGCTGCAAAGCGACCACCCGCTGCCTTGAAGGGACCGCGCC
GCCCGCCATGGCTCAGTCGGACGCCGAGGCCCTGGCGGGCGCTCTGGACAAGGACGAGGGTCGG
GCCTCCCCCTGCACGCCCAGCACGCCATCCGTCTGCTCGCCGCCTTCCGCCGCTTCCTCCGTGC
CGTCCGCCGGCAAGAACATCTGCGCCAGTTGTGGCCTCGAGATCCTGGACCGGGACCTGCTCAA
GGTCAACAACCTCATCTGGCACGTGCGGTGCCTCGAGTGCTCCGTGTGTCGCACGTCGCTGAGG
CAGCAGAACAGCTGCTACATCAAGAATAAGGAAATCTTCTGCAAGATGGACTACTTCAGCCGAT
TTGGGACCAAGTGTGCACGGTGCGGTCGACAGATCTATGCCAGCGATTGGGTGCGGCGGGCACG
CGGCAATGCCTATCATCTGGCCTGCTTCGCCTGCTTTTCATGCAAGCGCCAGCTGTCCACGGGC
GAGGAGTTTGGCCTGGTGGAGGAGAAGGTGCTGTGCCGCATCCACTACGACACCATGATCGAGA
ACCTCAAGAGAGCTGCTGAGAACGGGAACGGCCTCACGCTGGAGGGGGCGGTGCCCTCGGAGCA
GGACAGTCAGCCCAAACCGGCCAAGCGCGCGCGCACGTCCTTCACCGCGGAGCAGCTGCAGGTG
ATGCAGGCGCAGTTCGCGCAGGACAACAACCCGGACGCACAGACGCTGCAGAAGCTCGCAGACA
TGACGGGCCTCAGCCGGAGGGTCATCCAGGTGTGGTTCCAAAACTGCCGGGCGCGTCATAAAAA
GCACACACCGCAGCATCCTGTGCCGCCCTCCGGGGCGCCGCCGTCCCGCCTCCCTTCCGCCCTG
CCCGAGGACATCCACTACTCCCCGTTCAGCAGCCCCGAGCGGGCGCGCATGGTCACCCTGCACG
GCTACATCGAGAGTCATCCTTTTTCAGTACTAATGCTGTCTGTCCACGGGCACCCCACCACTGC
CCCACAGCCGCCGAAAGCTGGTGTCCACGCCACTGCCAGGGATCCACCCGCGCCACATCCGCCC
TTCACCCGCTGTCCTGATCGCCTCTGGCTGGACCCCTGGGCCTGGCCTTCCCTTCTCCTGCTGA
GAACCAGAACCTGCCAAGGCACCACGGAGTCCTCCTCTCGGAAGGCAGAGCTCCCTGAAATTTG
GAATCAGGGTGAAAAACAACGGCCTGTTTTTCCATTTAGACAGGAGTCATCTTCAACTTAAGCT
GATTACAATAGCAAAAGGCCAAAGGCCAAATTGAATCTTGCAGCGCCAACAGCCTTCTAATTTA
CAGGTTTTCTTTCTTCCCATCCTGGCCTTTATTTACTTCTTCCTTGCAACCATCTCTGAATTCC
GAATAGCCGACAACCCCCAATGTTATCCACTCTGTTGCTTTTGTCTGGAAAACTCTACAGTGTT
TGTGGGATGTCCCCAAAGGAAAGCTATGTTCTAATTTTATCATTTCCATCTGTCTGGTTATGTC
AAGTTAATTCAGAGAGAGAAGAGACACTGACCAACCCTGAGAGGCCCAACAGGGCAGAGATGGA
GGCCGGTCCAGACCAAGAGGCAGGGGGATAGGCGGGGGCTGGGAGGGGGGTGGCCAGGACTCCC
ACTGGAGAACGACGACGTAGCATGCTGGGTGTGGGAGGCACTAACTATTTCAAGGAGAGAGAAG
AGAAAACTCGGGGTATATATGGGGAGACTCTGTTCCTACCTAGTTATCTGGCATCCATACAGGA
CAGCTGGCAGAAATGTTACTTGATATGTATGAGGGCATTTCTGAATGCTTGTGCCGGTTAGAGT
CAGGGGCCCTTGTTGGCTACTTGCTGACTCCTGATGGGGGCACTTGGGCCCCCAAGGGCCATGG
GGGCTTCCTTGGAGGGAGGGGCCCTTCCTGGGGGGAGCTGGGGAAATGGAGCCCGGGGACATGG
TGGTAAGAATGCTAATTCTGGACCCATTTCTGAGTAGAGAGAAGGCGCTTGCTGCCTAGGTGAA
CCTGCTGAGCCCAGAATTGCAGGGGACACTGGTGGGCTCCCCCAGTACCCCTGTGCAGAGCCAG
CGCCTTCCCCCACTCGGAAATGTGGAGGCCAGACACGGCTGTGCTCACGACCACCCTATTCTGC
TGCAACTCTTCCACCCCAAACAAAAGGGCTTGGGCTGCACAAGACCACGATTTATGTTTTCAGG
AGACGCCCGTTTGTCCCAAGCTTATCCTGTAATTTCAGAATTACTTAGTGTCCTGATGCATTAC
CTATTAGAGGCTGCTAGTAAGCATGTTCTAGCCCAAGTCCTCCCTCCTGCTTTGGTTAACCCGA
TACATTGCTTTTGGAAGGAGACTCTAGGACCGGGAAAGCATGTTCATGGCACATACGTATCTGC
TGTCCCTGCTTTTGCCCATGGTGGACACCGCTGATTGACTGCATCCCTCTCAGAGTCTGGATAA
GGTTTCGGAATCCAAATGCCTGAAGTTCGGCCCTTAAAACGAATACCTACCTGCCTTTCTTGCT
CTGGGACCTGGAGGAGGGCGAGGCACAGGTGTAGCCTGAGAAGGGAACCTGCTTCCTCTCCCTT
CCAAAGACAGTTCCATGGGACTCAGAGCCAAGCGGAGGTAGCACCGGAATGCAGTCAGCGCAGC
CCTGTTCATCCCCTGAATAGCCGATACCTGGCACTGCACAGGATGCTGATGTTAGCAAGAGAAG
CTTGGGCCCGATCCCTGGTGAGTGGGGAGCTCTCATGTTTCCTTTGATTTTTTGCTCCTGGTGA
TAGAAGCCCTGAGCACAGCCATGTGGTAAGTGGCCAGCCAAGCCCTGCCCAGGGTCACCTAGTT
CCCACTCTGCCTTGAGCCTCCCGCCTGGAGGTCTGTTCCTTGCGTGGATCACGTGGTTGTAGCA
TGTTGCCATTCAGACATGTCTCCACTAGCCTGTTAGAGCAGCCTGGGAACGCACAGGCCACCAA
GACTATTTATTTAAATATAAAACAGAGGGAGAAACACACACACACATGGAAAAAAAAAAATTGT
AAGCACTTTTTTGGTAAAACCAATGTCTGTTTTGTTACATACCTTTCATGTTGTGCTTTGTAAA
TGTCCTATTTGTGTAATAAATAAAGTTAATGCAAGTAGAAGTGCTGGCACTTAAATCCAGAA

hide sequence

RefSeq Acc Id:

XM_038487526 ⟹ XP_038343454

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	60,037,897 - 60,063,266 (+)	NCBI

RefSeq Acc Id:

XM_038487527 ⟹ XP_038343455

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	60,037,897 - 60,061,209 (+)	NCBI

RefSeq Acc Id:

XM_038487528 ⟹ XP_038343456

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	60,037,892 - 60,075,327 (+)	NCBI

RefSeq Acc Id:

XM_038487529 ⟹ XP_038343457

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	60,038,285 - 60,063,266 (+)	NCBI

RefSeq Acc Id:

XM_038549458 ⟹ XP_038405386

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,442,899 - 60,468,342 (+)	NCBI

RefSeq Acc Id:

XM_038549459 ⟹ XP_038405387

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,442,899 - 60,466,278 (+)	NCBI

RefSeq Acc Id:

XM_038549460 ⟹ XP_038405388

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,442,894 - 60,480,404 (+)	NCBI

RefSeq Acc Id:

XM_038549461 ⟹ XP_038405389

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	60,443,287 - 60,468,342 (+)	NCBI

RefSeq Acc Id:

XM_038613389 ⟹ XP_038469317

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	60,354,219 - 60,379,626 (+)	NCBI

RefSeq Acc Id:

XM_038613390 ⟹ XP_038469318

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	60,354,219 - 60,377,562 (+)	NCBI

RefSeq Acc Id:

XM_038613391 ⟹ XP_038469319

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	60,354,214 - 60,391,774 (+)	NCBI

RefSeq Acc Id:

XM_038613392 ⟹ XP_038469320

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	60,354,607 - 60,379,626 (+)	NCBI

RefSeq Acc Id:

XM_038620640 ⟹ XP_038476568

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	9	59,543,996 - 59,581,491 (+)	NCBI

RefSeq Acc Id:

XM_038678693 ⟹ XP_038534621

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	61,263,729 - 61,289,146 (+)	NCBI

RefSeq Acc Id:

XM_038678694 ⟹ XP_038534622

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	61,263,729 - 61,287,083 (+)	NCBI

RefSeq Acc Id:

XM_038678695 ⟹ XP_038534623

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	61,263,724 - 61,301,199 (+)	NCBI

RefSeq Acc Id:

XM_038678696 ⟹ XP_038534624

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	61,264,117 - 61,289,146 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003435390	(Get FASTA)	NCBI Sequence Viewer
	XP_005625464	(Get FASTA)	NCBI Sequence Viewer
	XP_005625465	(Get FASTA)	NCBI Sequence Viewer
	XP_038343454	(Get FASTA)	NCBI Sequence Viewer
	XP_038343455	(Get FASTA)	NCBI Sequence Viewer
	XP_038343456	(Get FASTA)	NCBI Sequence Viewer
	XP_038343457	(Get FASTA)	NCBI Sequence Viewer
	XP_038405386	(Get FASTA)	NCBI Sequence Viewer
	XP_038405387	(Get FASTA)	NCBI Sequence Viewer
	XP_038405388	(Get FASTA)	NCBI Sequence Viewer
	XP_038405389	(Get FASTA)	NCBI Sequence Viewer
	XP_038469317	(Get FASTA)	NCBI Sequence Viewer
	XP_038469318	(Get FASTA)	NCBI Sequence Viewer
	XP_038469319	(Get FASTA)	NCBI Sequence Viewer
	XP_038469320	(Get FASTA)	NCBI Sequence Viewer
	XP_038476568	(Get FASTA)	NCBI Sequence Viewer
	XP_038534621	(Get FASTA)	NCBI Sequence Viewer
	XP_038534622	(Get FASTA)	NCBI Sequence Viewer
	XP_038534623	(Get FASTA)	NCBI Sequence Viewer
	XP_038534624	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000030074.4
	ENSCAFP00000042212.3
	ENSCAFP00030004097.1
	ENSCAFP00030004112.1
	ENSCAFP00030004130.1
	ENSCAFP00030004145.1
	ENSCAFP00030004157.1
	ENSCAFP00030004175.1
	ENSCAFP00030004198.1
	ENSCAFP00030004231.1
	ENSCAFP00040004261.1
	ENSCAFP00040004282.1
	ENSCAFP00845019656
	ENSCAFP00845019656.1
	ENSCAFP00845019665
	ENSCAFP00845019665.1

RefSeq Acc Id:	XP_005625464 ⟸ XM_005625407
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q130 (UniProtKB/TrEMBL), A0A8P0NLG6 (UniProtKB/TrEMBL), A0A8C0M3H2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYWKHETAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGAL DKDEGRASPCTPSTPSVCSPPSAASSVPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSV CRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK RQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFT AEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPS RLPSALPEDIHYSPFSSPERARMVTLHGYIESHPFSVLMLSVHGHPTTAPQPPKAGVHATARDP PAPHPPFTRCPDRLWLDPWAWPSLLLLRTRTCQGTTESSSRKAELPEIWNQGEKQRPVFPFRQE SSST hide sequence

RefSeq Acc Id:	XP_003435390 ⟸ XM_003435342
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0M6X5 (UniProtKB/TrEMBL), A0A8I3NP15 (UniProtKB/TrEMBL), A0A8C0KPR1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYWKHETAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGAL DKDEGRASPCTPSTPSVCSPPSAASSVPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSV CRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCK RQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFT AEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPS RLPSALPEDIHYSPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADMDGPLSNRG EKVILFQY hide sequence

RefSeq Acc Id:	XP_005625465 ⟸ XM_005625408
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0M3H2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRGLCWRNAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGRASPCT PSTPSVCSPPSAASSVPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQNSC YIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGL VEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQF AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPSRLPSALPEDIH YSPFSSPERARMVTLHGYIESHPFSVLMLSVHGHPTTAPQPPKAGVHATARDPPAPHPPFTRCP DRLWLDPWAWPSLLLLRTRTCQGTTESSSRKAELPEIWNQGEKQRPVFPFRQESSST hide sequence

RefSeq Acc Id:

ENSCAFP00000042212 ⟸ ENSCAFT00000045524

RefSeq Acc Id:

ENSCAFP00000043933 ⟸ ENSCAFT00000067225

RefSeq Acc Id:

ENSCAFP00000030074 ⟸ ENSCAFT00000032295

RefSeq Acc Id:	XP_038343456 ⟸ XM_038487528
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038343454 ⟸ XM_038487526
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038343455 ⟸ XM_038487527
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038343457 ⟸ XM_038487529
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038469319 ⟸ XM_038613391
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038469317 ⟸ XM_038613389
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038469318 ⟸ XM_038613390
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038469320 ⟸ XM_038613392
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038534623 ⟸ XM_038678695
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0M323 (UniProtKB/TrEMBL), A0A8C0KPR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534621 ⟸ XM_038678693
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NUD8 (UniProtKB/TrEMBL), A0A8C0M3H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534622 ⟸ XM_038678694
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0M6X5 (UniProtKB/TrEMBL), A0A8I3NP15 (UniProtKB/TrEMBL), A0A8C0KPR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534624 ⟸ XM_038678696
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0M3H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038476568 ⟸ XM_038620640
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0M323 (UniProtKB/TrEMBL), A0A8C0KPR1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405388 ⟸ XM_038549460
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0KPR1 (UniProtKB/TrEMBL), A0A8C0M323 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405386 ⟸ XM_038549458
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0M3H2 (UniProtKB/TrEMBL), A0A8C0Q130 (UniProtKB/TrEMBL), A0A8P0NLG6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405387 ⟸ XM_038549459
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KPR1 (UniProtKB/TrEMBL), A0A8C0M6X5 (UniProtKB/TrEMBL), A0A8I3NP15 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405389 ⟸ XM_038549461
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0M3H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845019656 ⟸ ENSCAFT00845024987

RefSeq Acc Id:

ENSCAFP00845019665 ⟸ ENSCAFT00845024997

Protein Domains

CHCH Homeobox LIM zinc-binding

Promoters

RGD ID:

13684851

Promoter ID:

EPDNEW_C2919

Type:

single initiation site

Name:

LHX6_1

Description:

LIM homeobox 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	60,349,969 - 60,350,029	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000020277	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030002509	UniProtKB/TrEMBL
	ENSCAFG00040002585	UniProtKB/TrEMBL
	ENSCAFG00845013866	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000032295.5	UniProtKB/TrEMBL
	ENSCAFT00000045524.4	UniProtKB/TrEMBL
	ENSCAFT00030004618.1	UniProtKB/TrEMBL
	ENSCAFT00030004633.1	UniProtKB/TrEMBL
	ENSCAFT00030004651.1	UniProtKB/TrEMBL
	ENSCAFT00030004667.1	UniProtKB/TrEMBL
	ENSCAFT00030004679.1	UniProtKB/TrEMBL
	ENSCAFT00030004694.1	UniProtKB/TrEMBL
	ENSCAFT00030004723.1	UniProtKB/TrEMBL
	ENSCAFT00030004757.1	UniProtKB/TrEMBL
	ENSCAFT00040004958.1	UniProtKB/TrEMBL
	ENSCAFT00040004982.1	UniProtKB/TrEMBL
	ENSCAFT00845024987	ENTREZGENE
	ENSCAFT00845024987.1	UniProtKB/TrEMBL
	ENSCAFT00845024997	ENTREZGENE
	ENSCAFT00845024997.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CHCH	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	NDUFA8	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	LHX6	ENTREZGENE
PANTHER	LIM/HOMEOBOX PROTEIN LHX	UniProtKB/TrEMBL
	LIM/HOMEOBOX PROTEIN LHX6	UniProtKB/TrEMBL
	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 8	UniProtKB/TrEMBL
	PTHR13344	UniProtKB/TrEMBL
Pfam	CHCH	UniProtKB/TrEMBL
	Homeodomain	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
PROSITE	CHCH	UniProtKB/TrEMBL
	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0KPR1	ENTREZGENE
	A0A8C0LZV1_CANLF	UniProtKB/TrEMBL
	A0A8C0M2Y4_CANLF	UniProtKB/TrEMBL
	A0A8C0M323	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0M332_CANLF	UniProtKB/TrEMBL
	A0A8C0M3H2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0M4M0_CANLF	UniProtKB/TrEMBL
	A0A8C0M4Z0_CANLF	UniProtKB/TrEMBL
	A0A8C0M6X5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PYN5_CANLF	UniProtKB/TrEMBL
	A0A8C0Q130	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NP15	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NUD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NLG6	ENTREZGENE
UniProt Secondary	A0A8P0NLG6	UniProtKB/TrEMBL
VGNC ID	VGNC:42667	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar